Lag0034421 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034421
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Coiled-coil domain-containing protein 9-like
Location	chr3: 7240067 .. 7241545 (-)
RNA-Seq Expression	Lag0034421
Synteny	Lag0034421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTATATGCCTCTTCACCTCTAAAACCCTAGCGTTACCGTCGGCGGCCTACCTACCCATATCTTCATCATCTACGAGCCATGGTTGCTGTTTTGGTGTCTGCAGATGCTCTTTCCCAAACAGGTCAATTTCGACTTCTAATTTGATCATTGGTAGAAGAAGAACGGGGAGGCAGGTGGTTCGAATGGCCCCCGAGGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGTAACTTTCTCTTTCTTGCTCTCGTTTATTTTCCTTGCGTGTTTGATGTTTTCCGGCTTGTTATGGAGTTCTTCTTCATGGGATTTTAGTGTCTTTGCTTCCTATTGATGGAGATTATGCTTTCCGCTTTTGTGTAGCTTGGGTAGTGTGTTGTTAGATCAGTTAGGGTGGATAACTGGAGCATTTCCTGGAATTTTATGTATATATTGTTAAATTTTTTTATCTTTGAAGGTTGTTTAAAAGCCTTATTCATGTATTATCTTGCGTGCCATGTTTTTCCTGTGAATTGTATCTGTCTGATCGTTTCGGTCATTTCTACATTTTCCATGGGAAGTATCCATCCTCGAGCGCTATAGAAAGTGGGCGCTGTCTGTCTGTGGACGAGGGGCGTTGACCATCATAATGTTTGCCTATTCGTATTGTCACAGATTTTGTGAGAATGGACCTTAGTTTTGTGGATTCCATTGGCTGCAAATCTGTTGATAAGTTACATTCAATTTGTAGCCTGGATATTTTTGCACCGTATCTGTGATAATTCTAGTCGTTTGCATTCTTGCACTGGGTTAATGCTTAGTGCACTCAGCACTGTAGTTGTTAAACTGATTGAAAGTAGATATTGGCAATCCTCACGAATGTTTGTCACGTAATTTAATAGTTTATATAGGTATTTTGCCTTTTGCAGTTTTGGGTTGGGGGTGTGTGGATCATAGTGGATGTCATGAGTCATGACATTTATATAAGGCGTGATATCTCTTTGTTCAATTTGTTTCCAGCTCTGCTGCCGGGTTTCTACTTTCTACTTCTAATGCGTCTGGAAAATAAACCTGATATCATTAGGTTATTTGTAAATTTATTATGACTTCTTTGCAATTCATTTTTAAGATGAAATTGTTGATGTTTTTACCTGATAAACTAAGTTATATATACATATATATATATGAAATACCTGACAAACTAAGTTTGGTTAGTAAGATATTCATGTATGAAGTGCTTGAGGAGGTTATAGCTAGTGTTCTTTGGATTGAATGCTTCTTGACTATTTGGTTGCAGGAGTGGGAGAGGCCTAAGCCAGGACGTAGACCAGATATCTTTCCTCAGTTTAGCCCAATGAAAACACCATTGCCACCACCATTGCCATGTGATCCCCCTGAAGAAGACGAGGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCAGACAAGGAAAATCCAGATGAGCCTGAGAAGCCGTAG

mRNA sequence

ATGGCGTCTATATGCCTCTTCACCTCTAAAACCCTAGCGTTACCGTCGGCGGCCTACCTACCCATATCTTCATCATCTACGAGCCATGGTTGCTGTTTTGGTGTCTGCAGATGCTCTTTCCCAAACAGGTCAATTTCGACTTCTAATTTGATCATTGGTAGAAGAAGAACGGGGAGGCAGGTGGTTCGAATGGCCCCCGAGGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCAGGACGTAGACCAGATATCTTTCCTCAGTTTAGCCCAATGAAAACACCATTGCCACCACCATTGCCATGTGATCCCCCTGAAGAAGACGAGGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCAGACAAGGAAAATCCAGATGAGCCTGAGAAGCCGTAG

Coding sequence (CDS)

ATGGCGTCTATATGCCTCTTCACCTCTAAAACCCTAGCGTTACCGTCGGCGGCCTACCTACCCATATCTTCATCATCTACGAGCCATGGTTGCTGTTTTGGTGTCTGCAGATGCTCTTTCCCAAACAGGTCAATTTCGACTTCTAATTTGATCATTGGTAGAAGAAGAACGGGGAGGCAGGTGGTTCGAATGGCCCCCGAGGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCAGGACGTAGACCAGATATCTTTCCTCAGTTTAGCCCAATGAAAACACCATTGCCACCACCATTGCCATGTGATCCCCCTGAAGAAGACGAGGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCAGACAAGGAAAATCCAGATGAGCCTGAGAAGCCGTAG

Protein sequence

MASICLFTSKTLALPSAAYLPISSSSTSHGCCFGVCRCSFPNRSISTSNLIIGRRRTGRQVVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKENPDEPEKP

Homology

[Close]

BLAST of Lag0034421 vs. NCBI nr
Match: XP_038879472.1 (uncharacterized protein LOC120071334 [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MASICLFTSKTLALPSAAYLPISSSSTSHGCCFGVCRCSFPNRSISTSNLIIGRRRTGRQ 60
           MASI LF+SKTL LPSA YLPISSSST+H CCFG CRCSFPN+ ISTSNLIIGRRRTGRQ
Sbjct: 1   MASISLFSSKTLVLPSATYLPISSSSTNHTCCFGGCRCSFPNKPISTSNLIIGRRRTGRQ 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEK 142
           EEKKEEEEENPDKENPDEPEK
Sbjct: 121 EEKKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Lag0034421 vs. NCBI nr
Match: XP_022987895.1 (uncharacterized protein LOC111485300 isoform X1 [Cucurbita maxima])

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 1   MASICLFTSKTLALPSAAYLPISSSSTSHGCCFGVCRCSFPNRSISTSNLIIGRRRTGRQ 60
           MASICL +SKTLALPSAAYLPISSSSTSH CCFG CR SFPN+ I TSNLII RRRTGR 
Sbjct: 1   MASICLLSSKTLALPSAAYLPISSSSTSHSCCFGGCRFSFPNKPIPTSNLIIVRRRTGRH 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEK+TRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEK 142
           EEKKEEEEENPDKENPDEPEK
Sbjct: 121 EEKKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Lag0034421 vs. NCBI nr
Match: XP_023530781.1 (uncharacterized protein LOC111793229 [Cucurbita pepo subsp. pepo] >KAG6587954.1 hypothetical protein SDJN03_16519, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021844.1 hypothetical protein SDJN02_15572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 128/141 (90.78%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MASICLFTSKTLALPSAAYLPISSSSTSHGCCFGVCRCSFPNRSISTSNLIIGRRRTGRQ 60
           MASICLF+SKTL LPSAAYLP+SSSSTSH  C   CRCSFPNR I+ SNLIIGRRRTGR 
Sbjct: 1   MASICLFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEK 142
           EEKKEEEEENPDKENPDEPEK
Sbjct: 121 EEKKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Lag0034421 vs. NCBI nr
Match: XP_022145037.1 (uncharacterized protein LOC111014560 [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MASICLFTSKTLALPSAAYLPISSSSTSHGCCFGVCRCSFPNRSISTSNLIIGRRRTGRQ 60
           MASICLF+SKTLALPSA YL ISSSSTSH C FG CRCSFP + +S S+L+IGRRRTG+Q
Sbjct: 1   MASICLFSSKTLALPSAVYLHISSSSTSHSCSFGNCRCSFPYKPVSNSHLVIGRRRTGKQ 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAP+EEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPDEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPE 141
           EEKKEEEEENPDKENPDEPE
Sbjct: 121 EEKKEEEEENPDKENPDEPE 140

[Close]

BLAST of Lag0034421 vs. NCBI nr
Match: XP_022933792.1 (uncharacterized protein LOC111441100 [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 127/141 (90.07%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MASICLFTSKTLALPSAAYLPISSSSTSHGCCFGVCRCSFPNRSISTSNLIIGRRRTGRQ 60
           MASIC F+SKTL LPSAAYLP+SSSSTSH  C   CRCSFPNR I+ SNLIIGRRRTGR 
Sbjct: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEK 142
           EEKKEEEEENPDKENPDEPEK
Sbjct: 121 EEKKEEEEENPDKENPDEPEK 141

The following BLAST results are available for this feature:

BLAST of Lag0034421 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879472.1	3.6e-62	93.62	uncharacterized protein LOC120071334 [Benincasa hispida]	[more]
XP_022987895.1	2.0e-60	92.20	uncharacterized protein LOC111485300 isoform X1 [Cucurbita maxima]	[more]
XP_023530781.1	1.7e-59	90.78	uncharacterized protein LOC111793229 [Cucurbita pepo subsp. pepo] >KAG6587954.1 ...	[more]
XP_022145037.1	1.1e-58	89.29	uncharacterized protein LOC111014560 [Momordica charantia]	[more]
XP_022933792.1	1.1e-58	90.07	uncharacterized protein LOC111441100 [Cucurbita moschata]	[more]

BLAST of Lag0034421 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..142
None	No IPR available	PANTHER	PTHR35713:SF4	SUBFAMILY NOT NAMED	coord: 9..140
None	No IPR available	PANTHER	PTHR35713	ARGININE/SERINE-RICH-LIKE SPLICING FACTOR	coord: 9..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034421.1	Lag0034421.1	mRNA