Lag0034412 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034412
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function, DUF538
Location	chr3: 7139316 .. 7139777 (-)
RNA-Seq Expression	Lag0034412
Synteny	Lag0034412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCATCTTCGTTCTCTTTCTCTTCTCCGCCCTTGTTTCGCTTTCGACCCAATCCACCGATTCAAAAGACCCAACAATTCCGCCCTCTTCAGCCCACGCTCGCCTCGCCGATTACGGATTTCCGTTCGGCCTTCTGCCGTCCTCCGTCTCGAGCTACACCATCAACGAGACCTCCGGAGACTTCTCTTTGGACCTCGGTGACTCGTGCAAGTTCACGCTTCCACCGGACAACTACGTGGCTTCGTTTTCTAGGGTTGTCACTGGGAAGATTGCAAAGGGTCGGATCCACAATCTCGACGGGATTCGAGTTCGCGCTTTGTTCCAGTGGTGGTCGATTACTGGTATCAAGTCCACCGGCGAGGATTTGGTCTTCGAGGTGGGGGTGATCACCGCGAAGTATCCGTCGAAGAGTTTCAACGAGAGCCCAGTTTGTGAAGGGCGTCGGTCTTCTTCGTAA

mRNA sequence

ATGAAATCCATCTTCGTTCTCTTTCTCTTCTCCGCCCTTGTTTCGCTTTCGACCCAATCCACCGATTCAAAAGACCCAACAATTCCGCCCTCTTCAGCCCACGCTCGCCTCGCCGATTACGGATTTCCGTTCGGCCTTCTGCCGTCCTCCGTCTCGAGCTACACCATCAACGAGACCTCCGGAGACTTCTCTTTGGACCTCGGTGACTCGTGCAAGTTCACGCTTCCACCGGACAACTACGTGGCTTCGTTTTCTAGGGTTGTCACTGGGAAGATTGCAAAGGGTCGGATCCACAATCTCGACGGGATTCGAGTTCGCGCTTTGTTCCAGTGGTGGTCGATTACTGGTATCAAGTCCACCGGCGAGGATTTGGTCTTCGAGGTGGGGGTGATCACCGCGAAGTATCCGTCGAAGAGTTTCAACGAGAGCCCAGTTTGTGAAGGGCGTCGGTCTTCTTCGTAA

Coding sequence (CDS)

ATGAAATCCATCTTCGTTCTCTTTCTCTTCTCCGCCCTTGTTTCGCTTTCGACCCAATCCACCGATTCAAAAGACCCAACAATTCCGCCCTCTTCAGCCCACGCTCGCCTCGCCGATTACGGATTTCCGTTCGGCCTTCTGCCGTCCTCCGTCTCGAGCTACACCATCAACGAGACCTCCGGAGACTTCTCTTTGGACCTCGGTGACTCGTGCAAGTTCACGCTTCCACCGGACAACTACGTGGCTTCGTTTTCTAGGGTTGTCACTGGGAAGATTGCAAAGGGTCGGATCCACAATCTCGACGGGATTCGAGTTCGCGCTTTGTTCCAGTGGTGGTCGATTACTGGTATCAAGTCCACCGGCGAGGATTTGGTCTTCGAGGTGGGGGTGATCACCGCGAAGTATCCGTCGAAGAGTTTCAACGAGAGCCCAGTTTGTGAAGGGCGTCGGTCTTCTTCGTAA

Protein sequence

MKSIFVLFLFSALVSLSTQSTDSKDPTIPPSSAHARLADYGFPFGLLPSSVSSYTINETSGDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIKSTGEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS

Homology

[Close]

BLAST of Lag0034412 vs. NCBI nr
Match: KAG7023568.1 (hypothetical protein SDJN02_14594 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.7e-76
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSKDPTIPPSSAHARLADYGFPFGLLPSSVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDS D T PPSSAHARLA+YGFPFGLLPS+VSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLTAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIKST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGI+ST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Lag0034412 vs. NCBI nr
Match: XP_022961236.1 (uncharacterized protein LOC111461806 [Cucurbita moschata] >XP_022987892.1 uncharacterized protein LOC111485298 [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSKDPTIPPSSAHARLADYGFPFGLLPSSVSSYTINETS 60
           MKSIFVLFLFSALVSLSTQSTDS D   PPSSAHARLA+YGFPFGLLPS+VSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSLSTQSTDSNDLKAPPSSAHARLANYGFPFGLLPSAVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIKST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGI+ST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Lag0034412 vs. NCBI nr
Match: KAG7021833.1 (hypothetical protein SDJN02_15561, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.4 bits (742), Expect = 8.9e-75
Identity = 143/153 (93.46%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSKDPTIPPSSAHARLADYGFPFGLLPSSVSSYTINETS 60
           MKSIFVLFLFSALVS+STQSTDSK PTIPPSSAHARLA+YGFPFGLLPS+VSSYTINETS
Sbjct: 1   MKSIFVLFLFSALVSVSTQSTDSKGPTIPPSSAHARLANYGFPFGLLPSTVSSYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIKST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNL+GIRVRALFQWWSITGIKST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLNGIRVRALFQWWSITGIKST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSK+FN+SPVCEGR S+S
Sbjct: 121 GEDLVFEVGMITAKYPSKTFNDSPVCEGRLSAS 153

[Close]

BLAST of Lag0034412 vs. NCBI nr
Match: XP_004148715.1 (uncharacterized protein LOC101218800 [Cucumis sativus] >XP_031736120.1 uncharacterized protein LOC101218800 [Cucumis sativus] >KGN65370.1 hypothetical protein Csa_019712 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 143/153 (93.46%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSKDPTIPPSSAHARLADYGFPFGLLPSSVSSYTINETS 60
           MKSIF+LFLFSAL+SLSTQS DSK+  IPPSSAHARLADYGFPFGLLPS+VSSYTIN+TS
Sbjct: 1   MKSIFLLFLFSALLSLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSSYTINDTS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIKST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGI+ST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

[Close]

BLAST of Lag0034412 vs. NCBI nr
Match: XP_008463372.1 (PREDICTED: uncharacterized protein LOC103501542 [Cucumis melo] >KAA0046618.1 uncharacterized protein E6C27_scaffold114G001670 [Cucumis melo var. makuwa] >TYK00085.1 uncharacterized protein E5676_scaffold596G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.8e-74
Identity = 142/153 (92.81%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MKSIFVLFLFSALVSLSTQSTDSKDPTIPPSSAHARLADYGFPFGLLPSSVSSYTINETS 60
           MKSIF+LFLFSAL+ LSTQS DSK+  IPPSSAHARLADYGFPFGLLPS+VS+YTINETS
Sbjct: 1   MKSIFLLFLFSALLPLSTQSIDSKNLNIPPSSAHARLADYGFPFGLLPSAVSTYTINETS 60

Query: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIKST 120
           GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGI+ST
Sbjct: 61  GDFSLDLGDSCKFTLPPDNYVASFSRVVTGKIAKGRIHNLDGIRVRALFQWWSITGIRST 120

Query: 121 GEDLVFEVGVITAKYPSKSFNESPVCEGRRSSS 154
           GEDLVFEVG+ITAKYPSKSFNESPVCEGRRSSS
Sbjct: 121 GEDLVFEVGLITAKYPSKSFNESPVCEGRRSSS 153

The following BLAST results are available for this feature:

BLAST of Lag0034412 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023568.1	4.7e-76	96.08	hypothetical protein SDJN02_14594 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961236.1	2.3e-75	95.42	uncharacterized protein LOC111461806 [Cucurbita moschata] >XP_022987892.1 unchar...	[more]
KAG7021833.1	8.9e-75	93.46	hypothetical protein SDJN02_15561, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004148715.1	1.5e-74	93.46	uncharacterized protein LOC101218800 [Cucumis sativus] >XP_031736120.1 uncharact...	[more]
XP_008463372.1	5.8e-74	92.81	PREDICTED: uncharacterized protein LOC103501542 [Cucumis melo] >KAA0046618.1 unc...	[more]

BLAST of Lag0034412 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 19..145 e-value: 2.6E-27 score: 97.2
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 6..147
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 35..140 e-value: 2.7E-28 score: 98.6
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 13..153
None	No IPR available	PANTHER	PTHR31676:SF138	BNAA02G04340D PROTEIN	coord: 13..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034412.1	Lag0034412.1	mRNA