Lag0034348 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034348
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Alba domain-containing protein
Location	chr3: 6550473 .. 6552098 (-)
RNA-Seq Expression	Lag0034348
Synteny	Lag0034348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGATAACGGAGGGTGTCAACTCCATCGCCTTGACAGCTGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTATTCTTCTATGTCAATCTCGCTAAGGTTCGTTTCCTTTTTTATGTCTTCTTCGAATTCGATTACTCTCTTGCTCTCTTTCCCAATCTGGGTTTTTCTTATTTGGTTTAGATTGTGTATATTTTCCCCGTTTTGGGTTTCATCTGGCTTCGTTAACCCTTTGGTTACGGATTTTTCTTTTTTCAATTTATATAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGGTAGGTTTTCTACACTGTTTTCGCGCCTAATATTGAAGGTTTTCGATTTTGGGAAATTCGGATTCGCTTCCTTGAGTTTGGTCTTTGTTCTTTAGTTTAGTATCTTAACGTAGGGACGTGGTGGTTGTTTAATGTGCACTCTTGGCTGGATTGGATTGTAATTTATGTATTACATGACTTGGCAGATTTGATTTTTCTATCGTTTTCGGTACTTCCTTTATTTGGGTGTTTATGTTATCTTTATGAAACAGAACAGAACAGTTTGTGCTTTTCGCACTTTCTTAATTTCCCCGTCTTGTGTCTGGATGTGATTCATTATTGTAGTTATTATGCTTTTAGTTATTTTTTATTGTTGAGTAATTGAACTAAAGATATTGTGTTCATGAGTATATTTCATTTGTCAACCTTTCATACCAAGATATTCAAATTCTTTTGTGATGTGATATTTGATATTCAGTTTAAGAGCCTGATTTTTTAAATTTATTCCTGTCATATACTTCGTGGTTATCTATGTTTATAGTTTGCAACTAAGGCACTTAAGTGCTGCTTAACTGAAACATCTCTGCAAATGTGCTCACTGTTTTTTATTCGACTAATCTAGCATTTTTCTACTTGCATTTCAACAGTCAGTTGATCCTTTTGCAATGGTCATTTGGTTTATTAATGTGTTTAAACTTCTATGTGTGCTTTTGCAGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAGTAAATATCCTCTTCCTTCCTTTTTAAGAATATGCAATTGGGGTTAACTCTTAACGCTCACAGAAATTATGTTATATTCTACAGAGATAATGACATCTACTGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTCCAAAAGGCTAAGGTAATATGTCATACTGCTTTCTTGCATTGGTTTCTTCATGATGGATGAAAATTTGGAAGTTGTCTCTCTCGTGTCCATGTTTTGGCAAATAAAAGTATATTCTCGTGTAAATTTTAGTCAAACTCCTCACATTTATTAATTCTTATAGTTGGACCCTAGAATTAGTGTTTCGGGTATTTGTATTCATTGAGCATGCAAATGAATAACTGGGACTGTGCAAAATTCTCTTTGTTTGCATTTGCTTAGATAAGTCTAACACTTGTCATGACTGATTTTTGCCTTCCAGATTGAGATTGTGCTGGGAAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGGGAAAACGAAGATGGTGAAGAGCAGAGTTGA

mRNA sequence

ATGGAAGAGATAACGGAGGGTGTCAACTCCATCGCCTTGACAGCTGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTATTCTTCTATGTCAATCTCGCTAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATAATGACATCTACTGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTCCAAAAGGCTAAGATTGAGATTGTGCTGGGAAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGGGAAAACGAAGATGGTGAAGAGCAGAGTTGA

Coding sequence (CDS)

ATGGAAGAGATAACGGAGGGTGTCAACTCCATCGCCTTGACAGCTGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTATTCTTCTATGTCAATCTCGCTAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATAATGACATCTACTGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTCCAAAAGGCTAAGATTGAGATTGTGCTGGGAAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGGGAAAACGAAGATGGTGAAGAGCAGAGTTGA

Protein sequence

MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEERENEDGEEQS

Homology

[Close]

BLAST of Lag0034348 vs. NCBI nr
Match: XP_022961070.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023516863.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >XP_023516864.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >XP_023516865.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >KAG6589857.1 hypothetical protein SDJN03_15280, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023529.1 hypothetical protein SDJN02_14555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.4 bits (612), Expect = 9.0e-60
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENEDGEEQS 131
           RENEDGEEQS
Sbjct: 121 RENEDGEEQS 130

[Close]

BLAST of Lag0034348 vs. NCBI nr
Match: XP_004150019.1 (uncharacterized protein At2g34160 [Cucumis sativus] >XP_008444017.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >XP_022144816.1 uncharacterized protein At2g34160-like [Momordica charantia] >XP_038878653.1 uncharacterized protein At2g34160-like [Benincasa hispida] >KAA0046788.1 Alba domain-containing protein [Cucumis melo var. makuwa] >KGN65316.1 hypothetical protein Csa_020079 [Cucumis sativus] >TYK29659.1 Alba domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.6e-59
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENEDGEEQS 131
           RENEDGEEQS
Sbjct: 121 RENEDGEEQS 130

[Close]

BLAST of Lag0034348 vs. NCBI nr
Match: XP_022987902.1 (uncharacterized protein At2g34160-like [Cucurbita maxima] >XP_022987903.1 uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAA EE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAEEE 120

Query: 121 RENEDGEEQS 131
           RENEDGEEQS
Sbjct: 121 RENEDGEEQS 130

[Close]

BLAST of Lag0034348 vs. NCBI nr
Match: XP_022972044.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 4   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 63

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 64  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 123

Query: 121 RENEDGEEQS 131
           REN DGEEQS
Sbjct: 124 RENGDGEEQS 133

[Close]

BLAST of Lag0034348 vs. NCBI nr
Match: XP_022924689.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023529342.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >KAG7021810.1 hypothetical protein SDJN02_15538 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENEDGEEQS 131
           REN DGEEQS
Sbjct: 121 RENGDGEEQS 130

[Close]

BLAST of Lag0034348 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.0e-50
Identity = 106/130 (81.54%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RENEDGEEQS 131
           +E+ + + Q+
Sbjct: 121 KEDAEAQVQN 130

The following BLAST results are available for this feature:

BLAST of Lag0034348 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961070.1	9.0e-60	100.00	uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023516863.1 unch...	[more]
XP_004150019.1	2.6e-59	99.23	uncharacterized protein At2g34160 [Cucumis sativus] >XP_008444017.1 PREDICTED: u...	[more]
XP_022987902.1	3.4e-59	99.23	uncharacterized protein At2g34160-like [Cucurbita maxima] >XP_022987903.1 unchar...	[more]
XP_022972044.1	5.8e-59	99.23	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
XP_022924689.1	5.8e-59	99.23	uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023529342.1 unch...	[more]

BLAST of Lag0034348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	3.0e-50	81.54	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 19..130 e-value: 4.0E-57 score: 193.1
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 20..115
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..130 e-value: 4.2E-64 score: 213.0
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 1..130
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 21..74 e-value: 1.1E-12 score: 47.6
None	No IPR available	PANTHER	PTHR31947:SF32	SUBFAMILY NOT NAMED	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034348.1	Lag0034348.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding