Lag0034313 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034313
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionagamous-like MADS-box protein AGL103
Locationchr3: 6265702 .. 6266010 (-)
RNA-Seq ExpressionLag0034313
SyntenyLag0034313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTGGAGGAGCAAAGTTACGACATGTTTGGCAGCTCGGTATCCATGGGAACACATGCGACAATGCCATTCCATCACCAATATCATCAAATCCAAGCAATGGCTCATCAAAATCTTCAAATGGGGAGGTCAGTTGTTCCAATTGAGAATTTTTCTCAACACATTTTTGGATCAAATGGGTCATCAGCTCAAATTCAATTCAATTATGAAAATTGCTTCCAAAACCCTAATTTCGATGGTGAACCAACCAATGGGATAATCATGGATCATCACCCCAAGCTTGAGAATTTTCTCAATACCTTTTGA

mRNA sequence

ATGTCATTGGAGGAGCAAAGTTACGACATGTTTGGCAGCTCGGTATCCATGGGAACACATGCGACAATGCCATTCCATCACCAATATCATCAAATCCAAGCAATGGCTCATCAAAATCTTCAAATGGGGAGGTCAGTTGTTCCAATTGAGAATTTTTCTCAACACATTTTTGGATCAAATGGGTCATCAGCTCAAATTCAATTCAATTATGAAAATTGCTTCCAAAACCCTAATTTCGATGGTGAACCAACCAATGGGATAATCATGGATCATCACCCCAAGCTTGAGAATTTTCTCAATACCTTTTGA

Coding sequence (CDS)

ATGTCATTGGAGGAGCAAAGTTACGACATGTTTGGCAGCTCGGTATCCATGGGAACACATGCGACAATGCCATTCCATCACCAATATCATCAAATCCAAGCAATGGCTCATCAAAATCTTCAAATGGGGAGGTCAGTTGTTCCAATTGAGAATTTTTCTCAACACATTTTTGGATCAAATGGGTCATCAGCTCAAATTCAATTCAATTATGAAAATTGCTTCCAAAACCCTAATTTCGATGGTGAACCAACCAATGGGATAATCATGGATCATCACCCCAAGCTTGAGAATTTTCTCAATACCTTTTGA

Protein sequence

MSLEEQSYDMFGSSVSMGTHATMPFHHQYHQIQAMAHQNLQMGRSVVPIENFSQHIFGSNGSSAQIQFNYENCFQNPNFDGEPTNGIIMDHHPKLENFLNTF
Homology
[Close]
BLAST of Lag0034313 vs. NCBI nr
Match: XP_023512369.1 (agamous-like MADS-box protein AGL103 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-18
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 0 

Query: 1   MSLEEQSYDMFGSSVSMGTHATMPFHHQYH-QIQAMAHQNLQMGRSVVPIENFSQHIFGS 60
           MS  EQSY+MFG+  SM T   MPFHHQYH Q+Q MA QN QM      +EN SQ +FGS
Sbjct: 181 MSYGEQSYEMFGNP-SMETQPMMPFHHQYHQQLQTMA-QNRQMDHE---LENLSQILFGS 240

Query: 61  NGSSAQIQFNY-ENCFQNPNFDGEPTNGIIMDH 92
           NGSSAQIQ NY  NCFQNPNF  +PTNG++MD+
Sbjct: 241 NGSSAQIQSNYGNNCFQNPNFYTDPTNGMVMDN 268

[Close]
BLAST of Lag0034313 vs. NCBI nr
Match: XP_022973845.1 (agamous-like MADS-box protein AGL103 [Cucurbita maxima])

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-18
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 0 

Query: 1   MSLEEQSYDMFGSSVSMGTHATMPFHHQYH-QIQAMAHQNLQMGRSVVPIENFSQHIFGS 60
           MS  EQSY+MFG+  SM T   MPFHHQYH Q+Q MA QN QM      +EN SQ +FGS
Sbjct: 181 MSYGEQSYEMFGNP-SMETQPMMPFHHQYHQQLQTMA-QNRQMDHE---LENLSQILFGS 240

Query: 61  NGSSAQIQFNY-ENCFQNPNFDGEPTNGIIMDH 92
           NGSSAQIQ NY  NCFQNPNF  +PTNG++MD+
Sbjct: 241 NGSSAQIQSNYGNNCFQNPNFYTDPTNGMVMDN 268

[Close]
BLAST of Lag0034313 vs. NCBI nr
Match: KAG7011113.1 (MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 6.7e-18
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 0 

Query: 1   MSLEEQSYDMFGSSVSMGTHATMPFHHQYH-QIQAMAHQNLQMGRSVVPIENFSQHIFGS 60
           MS  EQSY+MFG+  SM T   MPFHHQYH Q+Q MA QN QM      +EN SQ +FGS
Sbjct: 181 MSYGEQSYEMFGNP-SMETQPMMPFHHQYHQQLQTMA-QNRQMDHE---LENLSQILFGS 240

Query: 61  NGSSAQIQFNY-ENCFQNPNFDGEPTNGIIMDH 92
           NGS+AQIQ NY  NCFQNPNF  +PTNG++MD+
Sbjct: 241 NGSTAQIQSNYGNNCFQNPNFYTDPTNGMVMDN 268

[Close]
BLAST of Lag0034313 vs. NCBI nr
Match: KAG6571340.1 (MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0 

Query: 1   MSLEEQSYDMFGSSVSMGTHATMPFHHQYH-QIQAMAHQNLQMGRSVVPIENFSQHIFGS 60
           MS  EQSY+MFG+  SM T   MPFHHQYH Q+Q MA QN QM      +EN SQ +FGS
Sbjct: 181 MSYGEQSYEMFGNP-SMETQPMMPFHHQYHQQLQTMA-QNRQMDHE---LENLSQILFGS 240

Query: 61  NGSSAQIQFNY-ENCFQNPNFDGEPTNGIIMDH 92
           NGS+AQI+ NY  NCFQNPNF  +PTNG++MD+
Sbjct: 241 NGSTAQIESNYGNNCFQNPNFYTDPTNGMVMDN 268

[Close]
BLAST of Lag0034313 vs. NCBI nr
Match: XP_022932032.1 (agamous-like MADS-box protein AGL103 [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0 

Query: 1   MSLEEQSYDMFGSSVSMGTHATMPFHHQYH-QIQAMAHQNLQMGRSVVPIENFSQHIFGS 60
           MS  EQSY+MFG+  SM T   MPFHHQYH Q+Q MA QN QM      +EN SQ +FGS
Sbjct: 181 MSYGEQSYEMFGNP-SMETRPMMPFHHQYHQQLQTMA-QNRQMDHE---LENLSQILFGS 240

Query: 61  NGSSAQIQFNY-ENCFQNPNFDGEPTNGIIMDH 92
           NGS+AQI+ NY  NCFQNPNF  +PTNG++MD+
Sbjct: 241 NGSTAQIESNYGNNCFQNPNFYTDPTNGMVMDN 268

The following BLAST results are available for this feature:
BLAST of Lag0034313 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023512369.13.0e-1863.44agamous-like MADS-box protein AGL103 [Cucurbita pepo subsp. pepo][more]
XP_022973845.13.0e-1863.44agamous-like MADS-box protein AGL103 [Cucurbita maxima][more]
KAG7011113.16.7e-1862.37MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. a... [more]
KAG6571340.11.5e-1761.29MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022932032.11.5e-1761.29agamous-like MADS-box protein AGL103 [Cucurbita moschata][more]
BLAST of Lag0034313 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034313.1Lag0034313.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
molecular_function GO:0000987 cis-regulatory region sequence-specific DNA binding