Lag0034268 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034268
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 5858145 .. 5858492 (+)
RNA-Seq ExpressionLag0034268
SyntenyLag0034268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAATGTCACTAAACGCATCAACGATGAAATTGGTACTTGTATTTCTAGTTTGCATAGCCATTTTAGCGTCACCTTCCATGGCTCGCATGACAACAATGGCGCCAACACCTGATCCATTGGTAACAGAGGATTTCTCTTTGTTTCCTTGCATATCATCTATTCCAGAGGTGGCGAAATGCGTGATAGATGTATTGAAGAATGCAGTTACTCCTCATCCTTCCTGTTGCAAAGCCATTTCTAAACTCAAAGATTGTTCTTCCGAGTTTCTCAAAGACATTCCCTCTGTTGACATGATTTTGATTAAGAGTGTTTGTGCTGTATGGGGCGTTTCAATCTCTTAA

mRNA sequence

ATGGCGGCAATGTCACTAAACGCATCAACGATGAAATTGGTACTTGTATTTCTAGTTTGCATAGCCATTTTAGCGTCACCTTCCATGGCTCGCATGACAACAATGGCGCCAACACCTGATCCATTGGTAACAGAGGATTTCTCTTTGTTTCCTTGCATATCATCTATTCCAGAGGTGGCGAAATGCGTGATAGATGTATTGAAGAATGCAGTTACTCCTCATCCTTCCTGTTGCAAAGCCATTTCTAAACTCAAAGATTGTTCTTCCGAGTTTCTCAAAGACATTCCCTCTGTTGACATGATTTTGATTAAGAGTGTTTGTGCTGTATGGGGCGTTTCAATCTCTTAA

Coding sequence (CDS)

ATGGCGGCAATGTCACTAAACGCATCAACGATGAAATTGGTACTTGTATTTCTAGTTTGCATAGCCATTTTAGCGTCACCTTCCATGGCTCGCATGACAACAATGGCGCCAACACCTGATCCATTGGTAACAGAGGATTTCTCTTTGTTTCCTTGCATATCATCTATTCCAGAGGTGGCGAAATGCGTGATAGATGTATTGAAGAATGCAGTTACTCCTCATCCTTCCTGTTGCAAAGCCATTTCTAAACTCAAAGATTGTTCTTCCGAGTTTCTCAAAGACATTCCCTCTGTTGACATGATTTTGATTAAGAGTGTTTGTGCTGTATGGGGCGTTTCAATCTCTTAA

Protein sequence

MAAMSLNASTMKLVLVFLVCIAILASPSMARMTTMAPTPDPLVTEDFSLFPCISSIPEVAKCVIDVLKNAVTPHPSCCKAISKLKDCSSEFLKDIPSVDMILIKSVCAVWGVSIS
Homology
BLAST of Lag0034268 vs. NCBI nr
Match: KAA0050081.1 (hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 7.7e-31
Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 0

Query: 1   MAAMSLNASTMKLVLVFLVCIAILASPSMARMTTMAPT-PDPLVTEDFSLFPCISSIPEV 60
           MAA SL  STMKL+L+FL C AI   P+ A    +APT PDP +TED S FPC S +PE 
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  AKCVIDVLKNAVTPHPSCCKAISKLKDCSSEFLKDIPSVDMILIKSVCAVWGVSIS 116
            KC+IDV K+ + PHP+CCKAISKLK CSS F   IPS DMILIKSVC  WG SIS
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGASIS 116

BLAST of Lag0034268 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0

Query: 4   MSLNASTMKLVLVFLVCIAILASPSMARMTTM-APTPDPLVTEDFSLFPCISSIPEVAKC 63
           M+ +A T KL LV LVCIAILAS   AR T + A TP    +EDFSLFPCIS +P+  KC
Sbjct: 1   MATSAIT-KLPLVLLVCIAILASSVTARPTIVAAATP---TSEDFSLFPCISFVPKATKC 60

Query: 64  VIDVLKNAVTPHPSCCKAISKLKDCSSEFLKDIPSVDMILIKSVCAVWGVSIS 116
           VIDVLKNAV PHPSCC+AIS+L DCSS+FLKDIPS DMIL+KS+CA WGVSIS
Sbjct: 61  VIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

BLAST of Lag0034268 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_004577 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-29
Identity = 71/116 (61.21%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MAAMSLNASTMKLVLVFLVCIAILASPSMARMTTMAPT-PDPLVTEDFSLFPCISSIPEV 60
           MAA SL   TMKL+LVF+ C AI A P+ A    MAPT P P  TED S FPC S +PE 
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  AKCVIDVLKNAVTPHPSCCKAISKLKDCSSEFLKDIPSVDMILIKSVCAVWGVSIS 116
            KC+IDV K+ +  HP+CCKAISKLK CSS F   IPS DMI+IKSVC  WG SIS
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

BLAST of Lag0034268 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 68/104 (65.38%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 9   STMKLVLVFLVCIAILASPSMARMTTMAPTPDPLVTEDFSLFPCISSIPEVAKCVIDVLK 68
           ++MKL LVFLVCIAILA   MA    +AP  DP   E+FSL  C S I E   C++DV+K
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPA-DPFTAEEFSLLGCTSFISEATNCMVDVMK 61

Query: 69  NAVTPHPSCCKAISKLKDCSSEFLKDIPSVDMILIKSVCAVWGV 113
           NAV PHPSCCKA SKL DCSSEFLK IPS DMILIK +CA+WGV
Sbjct: 62  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

BLAST of Lag0034268 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 76/113 (67.26%), Postives = 89/113 (78.76%), Query Frame = 0

Query: 4   MSLNASTMKLVLVFLVCIAILASPSMARMTTM-APTPDPLVTEDFSLFPCISSIPEVAKC 63
           M+ +A T KL L+ LVCIAILAS   AR T + A TP   +++DFSLFPCIS +P   K 
Sbjct: 1   MATSAIT-KLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKR 60

Query: 64  VIDVLKNAVTPHPSCCKAISKLKDCSSEFLKDIPSVDMILIKSVCAVWGVSIS 116
           VIDVLKNAV PHPSCC+AIS+L DCSS+FLKDIPS DMIL+KS+CA WGVSIS
Sbjct: 61  VIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050081.17.7e-3162.93hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa][more]
TYK10345.11.9e-2969.91hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KGN65096.15.5e-2961.21hypothetical protein Csa_004577 [Cucumis sativus][more]
KAE8653021.12.3e-2765.38hypothetical protein Csa_004567 [Cucumis sativus][more]
KAA0050063.12.3e-2767.26hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034268.1Lag0034268.1mRNA