Lag0034265 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034265
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 5828581 .. 5828928 (+)
RNA-Seq ExpressionLag0034265
SyntenyLag0034265
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCAGTGTCTCTGAACGCATCTGCAACTAAGTTAGCATTTGTATTCCTTGTTTGCGTAGCCTTTTTAGCATCACCTTCAATGGCCTGCATGGCGGTGATGGCGCCAGCACCTGATCCGTTGGTAACAGAGGATTTCTCTTTATTCCCCTGTATATCATCTGTTCCAGAGGTGACGAAATGCATGATAGATGTGTTTAGAAATGCAGTTGCTCCTCATCCCTCATGTTGTACAGCCATTTCTAAGCTCAAAGATTGTTCTTCTGAGTTTCTCAAAGATATTCCCTCGGTTGACATGATTTTGATTAAGAGCATTTGTGCTTTGTGGGGTGTTTCAATTTCCTAA

mRNA sequence

ATGGTGGCAGTGTCTCTGAACGCATCTGCAACTAAGTTAGCATTTGTATTCCTTGTTTGCGTAGCCTTTTTAGCATCACCTTCAATGGCCTGCATGGCGGTGATGGCGCCAGCACCTGATCCGTTGGTAACAGAGGATTTCTCTTTATTCCCCTGTATATCATCTGTTCCAGAGGTGACGAAATGCATGATAGATGTGTTTAGAAATGCAGTTGCTCCTCATCCCTCATGTTGTACAGCCATTTCTAAGCTCAAAGATTGTTCTTCTGAGTTTCTCAAAGATATTCCCTCGGTTGACATGATTTTGATTAAGAGCATTTGTGCTTTGTGGGGTGTTTCAATTTCCTAA

Coding sequence (CDS)

ATGGTGGCAGTGTCTCTGAACGCATCTGCAACTAAGTTAGCATTTGTATTCCTTGTTTGCGTAGCCTTTTTAGCATCACCTTCAATGGCCTGCATGGCGGTGATGGCGCCAGCACCTGATCCGTTGGTAACAGAGGATTTCTCTTTATTCCCCTGTATATCATCTGTTCCAGAGGTGACGAAATGCATGATAGATGTGTTTAGAAATGCAGTTGCTCCTCATCCCTCATGTTGTACAGCCATTTCTAAGCTCAAAGATTGTTCTTCTGAGTTTCTCAAAGATATTCCCTCGGTTGACATGATTTTGATTAAGAGCATTTGTGCTTTGTGGGGTGTTTCAATTTCCTAA

Protein sequence

MVAVSLNASATKLAFVFLVCVAFLASPSMACMAVMAPAPDPLVTEDFSLFPCISSVPEVTKCMIDVFRNAVAPHPSCCTAISKLKDCSSEFLKDIPSVDMILIKSICALWGVSIS
Homology
BLAST of Lag0034265 vs. NCBI nr
Match: KAA0050081.1 (hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 7.2e-29
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MVAVSLNASATKLAFVFLVCVAFLASPSMACMAVMAPA-PDPLVTEDFSLFPCISSVPEV 60
           M A SL  S  KL  +FL C A    P+ A  A +AP  PDP +TED S FPC S VPE 
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  TKCMIDVFRNAVAPHPSCCTAISKLKDCSSEFLKDIPSVDMILIKSICALWGVSIS 116
           TKCMIDVF++ +APHP+CC AISKLK CSS F   IPS DMILIKS+C  WG SIS
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGASIS 116

BLAST of Lag0034265 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 0

Query: 8   ASATKLAFVFLVCVAFLASPSMACMAVMAPAPDPLVTEDFSLFPCISSVPEVTKCMIDVF 67
           ++ TKL  V LVC+A LAS   A   ++A A     +EDFSLFPCIS VP+ TKC+IDV 
Sbjct: 4   SAITKLPLVLLVCIAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVL 63

Query: 68  RNAVAPHPSCCTAISKLKDCSSEFLKDIPSVDMILIKSICALWGVSIS 116
           +NAVAPHPSCC AIS+L DCSS+FLKDIPS DMIL+KSICA WGVSIS
Sbjct: 64  KNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

BLAST of Lag0034265 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 8   ASATKLAFVFLVCVAFLASPSMACMAVMAPAPDPLVTEDFSLFPCISSVPEVTKCMIDVF 67
           ++ TKL  V  VC+A LAS   AC  ++A A     +EDFSLFPCIS VP+ TKC+IDV 
Sbjct: 4   SAITKLPLVLRVCIAILASSVTACPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVL 63

Query: 68  RNAVAPHPSCCTAISKLKDCSSEFLKDIPSVDMILIKSICALWGVSIS 116
           +N VAPHPSCC AI++L DCSS+FLKDIPS DMIL+KSICA WGVSIS
Sbjct: 64  KNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

BLAST of Lag0034265 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 8.9e-27
Identity = 67/104 (64.42%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 9   SATKLAFVFLVCVAFLASPSMACMAVMAPAPDPLVTEDFSLFPCISSVPEVTKCMIDVFR 68
           ++ KL  VFLVC+A LA   MA    +APA DP   E+FSL  C S + E T CM+DV +
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPA-DPFTAEEFSLLGCTSFISEATNCMVDVMK 61

Query: 69  NAVAPHPSCCTAISKLKDCSSEFLKDIPSVDMILIKSICALWGV 113
           NAVAPHPSCC A SKL DCSSEFLK IPS DMILIK ICALWGV
Sbjct: 62  NAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

BLAST of Lag0034265 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_004577 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 67/116 (57.76%), Postives = 75/116 (64.66%), Query Frame = 0

Query: 1   MVAVSLNASATKLAFVFLVCVAFLASPSMACMAVMAPA-PDPLVTEDFSLFPCISSVPEV 60
           M A SL     KL  VF+ C A  A P+ A    MAP  P P  TED S FPC S VPE 
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TKCMIDVFRNAVAPHPSCCTAISKLKDCSSEFLKDIPSVDMILIKSICALWGVSIS 116
           TKCMIDVF++ +A HP+CC AISKLK CSS F   IPS DMI+IKS+C  WG SIS
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050081.17.2e-2960.34hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa][more]
TYK10345.11.6e-2866.67hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KAA0050079.12.8e-2864.81hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa][more]
KAE8653021.18.9e-2764.42hypothetical protein Csa_004567 [Cucumis sativus][more]
KGN65096.11.5e-2657.76hypothetical protein Csa_004577 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034265.1Lag0034265.1mRNA