Lag0034263 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034263
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 5818575 .. 5818910 (+)
RNA-Seq ExpressionLag0034263
SyntenyLag0034263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCAAAGTCATTGAAAGCATCTACAATCAATTTAGCACTTGTATTCCTAGTTTGCATAGCCATTTTTGCACCAATGGCGACGGCCCGCAAGGTGGCAATAGCAGCGGCTCCTGACCCGTTAGTACCGTTTTCGAACTGCACAGCATTCGTTTCAGAGTCAACGGAATGTGTGATGGATGTGTTTAAGAACGCTGTTGCTCCTCATCCTGCTTGTTGCAATGCCCTTGTTAAGCTCAACGAGTGTTCGCCCGAGTTTCTCAAAAACATTCCCCCCAGTAATATGGTTTTGATTAAGCAAATTTGTGCGTTGTGGGGAGTTTCAATTTCTTAG

mRNA sequence

ATGGTGCCAAAGTCATTGAAAGCATCTACAATCAATTTAGCACTTGTATTCCTAGTTTGCATAGCCATTTTTGCACCAATGGCGACGGCCCGCAAGGTGGCAATAGCAGCGGCTCCTGACCCGTTAGTACCGTTTTCGAACTGCACAGCATTCGTTTCAGAGTCAACGGAATGTGTGATGGATGTGTTTAAGAACGCTGTTGCTCCTCATCCTGCTTGTTGCAATGCCCTTGTTAAGCTCAACGAGTGTTCGCCCGAGTTTCTCAAAAACATTCCCCCCAGTAATATGGTTTTGATTAAGCAAATTTGTGCGTTGTGGGGAGTTTCAATTTCTTAG

Coding sequence (CDS)

ATGGTGCCAAAGTCATTGAAAGCATCTACAATCAATTTAGCACTTGTATTCCTAGTTTGCATAGCCATTTTTGCACCAATGGCGACGGCCCGCAAGGTGGCAATAGCAGCGGCTCCTGACCCGTTAGTACCGTTTTCGAACTGCACAGCATTCGTTTCAGAGTCAACGGAATGTGTGATGGATGTGTTTAAGAACGCTGTTGCTCCTCATCCTGCTTGTTGCAATGCCCTTGTTAAGCTCAACGAGTGTTCGCCCGAGTTTCTCAAAAACATTCCCCCCAGTAATATGGTTTTGATTAAGCAAATTTGTGCGTTGTGGGGAGTTTCAATTTCTTAG

Protein sequence

MVPKSLKASTINLALVFLVCIAIFAPMATARKVAIAAAPDPLVPFSNCTAFVSESTECVMDVFKNAVAPHPACCNALVKLNECSPEFLKNIPPSNMVLIKQICALWGVSIS
Homology
BLAST of Lag0034263 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-22
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0

Query: 9   STINLALVFLVCIAIFAPMATARKVAIAAAPDPL----VPFSNCTAFVSESTECVMDVFK 68
           ++I L LVF VC+AI A    A   A AA  DP     +    CT+F+SE+T+CV+DV K
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGA-AAPSDPFTAEELSLLGCTSFISEATKCVIDVMK 61

Query: 69  NAVAPHPACCNALVKLNECSPEFLKNIPPSNMVLIKQICALWGV 109
           NAVAPHP+CC A  KLN+CSPEFLK IP ++M+LIK ICALWGV
Sbjct: 62  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

BLAST of Lag0034263 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-22
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0

Query: 9   STINLALVFLVCIAIFAPMATARKVAIAAAPDPL----VPFSNCTAFVSESTECVMDVFK 68
           ++I L LVF VC+AI A    A   A AA  DP     +    CT+F+SE+T+CV+DV K
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGA-AAPSDPFTAEKLSLLGCTSFISEATKCVIDVMK 61

Query: 69  NAVAPHPACCNALVKLNECSPEFLKNIPPSNMVLIKQICALWGV 109
           NAVAPHP+CC A  KLN+CSPEFLK IP ++M+LIK ICALWGV
Sbjct: 62  NAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

BLAST of Lag0034263 vs. NCBI nr
Match: KAA0050081.1 (hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 0

Query: 1   MVPKSLKASTINLALVFLVCIAIFAPMATARKVAIA-AAPDPL----VPFSNCTAFVSES 60
           M  KSLK ST+ L L+FL C AIF   A A K A+A   PDP     + F  C +FV E+
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  TECVMDVFKNAVAPHPACCNALVKLNECSPEFLKNIPPSNMVLIKQICALWGVSIS 112
           T+C++DVFK+ +APHP CC A+ KL  CS  F   IP ++M+LIK +C  WG SIS
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGASIS 116

BLAST of Lag0034263 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 13  LALVFLVCIAIFAPMATARKVAIAAAPDPLVPFS--NCTAFVSESTECVMDVFKNAVAPH 72
           L LV LVCIAI A   TAR   +AAA      FS   C +FV ++T+CV+DV KNAVAPH
Sbjct: 9   LPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVAPH 68

Query: 73  PACCNALVKLNECSPEFLKNIPPSNMVLIKQICALWGVSIS 112
           P+CC A+ +L++CS +FLK+IP S+M+L+K ICA WGVSIS
Sbjct: 69  PSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

BLAST of Lag0034263 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-21
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 9   STINLALVFLVCIAIFAPMATARKVAIAAA-PDPLVPFS--NCTAFVSESTECVMDVFKN 68
           +++ L LVFLVCIAI A    A   A+A A P     FS   CT+F+SE+T C++DV KN
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKN 61

Query: 69  AVAPHPACCNALVKLNECSPEFLKNIPPSNMVLIKQICALWGV 109
           AVAPHP+CC A  KLN+CS EFLK IP ++M+LIK ICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10330.14.9e-2257.69hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa][more]
KAA0050078.14.9e-2257.69hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa][more]
KAA0050081.11.4e-2150.00hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa][more]
TYK10345.11.8e-2157.43hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KAE8653021.12.4e-2158.25hypothetical protein Csa_004567 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034263.1Lag0034263.1mRNA