Lag0034261 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034261
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 5806661 .. 5806999 (+)
RNA-Seq ExpressionLag0034261
SyntenyLag0034261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTAAAGTTCCTGAACGCACCCCTAGCAAGATTAGCACTTGTATTTCTAGTATGCATGGTCATTTTAGCCCCACAGATGACGACCCACACGGTTGCGGAGGTGGTGCCGGATCCATCGTTAACAGAGGATGACTCTCCGAATGGTTGCGGACCATTGATTCTAGAGGCGACGATGTGTGTGGGAGATATCATCAAGTCTCCATTTGCTACTCATCCTTCTTGTTGCAATGCCATTTCTAAGGCCAACGATTGTTCTCCCAAGTTTCTGGAGCACATTCCCTCTACTGTGATGGATATTATTAAGAAAATTTGTGGTTTAAATTTCTTAGACTAA

mRNA sequence

ATGGCGGTAAAGTTCCTGAACGCACCCCTAGCAAGATTAGCACTTGTATTTCTAGTATGCATGGTCATTTTAGCCCCACAGATGACGACCCACACGGTTGCGGAGGTGGTGCCGGATCCATCGTTAACAGAGGATGACTCTCCGAATGGTTGCGGACCATTGATTCTAGAGGCGACGATGTGTGTGGGAGATATCATCAAGTCTCCATTTGCTACTCATCCTTCTTGTTGCAATGCCATTTCTAAGGCCAACGATTGTTCTCCCAAGTTTCTGGAGCACATTCCCTCTACTGTGATGGATATTATTAAGAAAATTTGTGGTTTAAATTTCTTAGACTAA

Coding sequence (CDS)

ATGGCGGTAAAGTTCCTGAACGCACCCCTAGCAAGATTAGCACTTGTATTTCTAGTATGCATGGTCATTTTAGCCCCACAGATGACGACCCACACGGTTGCGGAGGTGGTGCCGGATCCATCGTTAACAGAGGATGACTCTCCGAATGGTTGCGGACCATTGATTCTAGAGGCGACGATGTGTGTGGGAGATATCATCAAGTCTCCATTTGCTACTCATCCTTCTTGTTGCAATGCCATTTCTAAGGCCAACGATTGTTCTCCCAAGTTTCTGGAGCACATTCCCTCTACTGTGATGGATATTATTAAGAAAATTTGTGGTTTAAATTTCTTAGACTAA

Protein sequence

MAVKFLNAPLARLALVFLVCMVILAPQMTTHTVAEVVPDPSLTEDDSPNGCGPLILEATMCVGDIIKSPFATHPSCCNAISKANDCSPKFLEHIPSTVMDIIKKICGLNFLD
Homology
BLAST of Lag0034261 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 65/110 (59.09%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 2   AVKFLNAPLARLALVFLVCMVILAPQMTTHTVAEVVPDPSLT---EDDSPNGCGPLILEA 61
           A K  +A   RLALVFLVC+VILAP +T HT+AE  P P L    +D S + C P ILEA
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAE-APSPLLVLLDQDSSFSNCAPFILEA 62

Query: 62  TMCVGDIIKSPFATHPSCCNAISKANDCSPKFLEHIPSTVMDIIKKICGL 109
           TMC+ D+IK P A HPSCC AIS  NDC+P+  +HIP   MD+IKKICGL
Sbjct: 63  TMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPG--MDVIKKICGL 109

BLAST of Lag0034261 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-24
Identity = 65/110 (59.09%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 2   AVKFLNAPLARLALVFLVCMVILAPQMTTHTVAEVVPDPSLT---EDDSPNGCGPLILEA 61
           A K  +A   RLALVFLVC+VILAP +T HT+AE  P P L    +D S + C P ILEA
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAE-APSPLLVLLDQDSSFSNCAPFILEA 62

Query: 62  TMCVGDIIKSPFATHPSCCNAISKANDCSPKFLEHIPSTVMDIIKKICGL 109
           TMC+ D+IK P A HPSCC AIS  NDC+P+   HIP   MD+IKKICGL
Sbjct: 63  TMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPG--MDVIKKICGL 109

BLAST of Lag0034261 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 57/108 (52.78%), Postives = 69/108 (63.89%), Query Frame = 0

Query: 1   MAVKFLNAPLARLALVFLVCMVILAPQMTTHTVAEVVPDPSLTEDDSPNGCGPLILEATM 60
           MA + LN    +L LVFLVC+ ILAP  T        P PS+ ++     C P ILEAT+
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVGDIIKSPFATHPSCCNAISKANDCSPKFLEHIPSTVMDIIKKICGL 109
           CV D+IK P A HPSCC AISK NDC+P+  + IPS  MD+IKKIC L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

BLAST of Lag0034261 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 10  LARLALVFLVCMVILAPQMTTHTVAEVVPDPSLTEDDSPNGCGPLILEATMCVGDIIKSP 69
           + +++L FLV M ILAP  T  TVA   P P   ED S + C P IL+ATMCV  +IK P
Sbjct: 11  IMKISLTFLVGMAILAPSATATTVA-AAPSPLALEDLSFSNCTPFILDATMCVVSVIKFP 70

Query: 70  FATHPSCCNAISKANDCSPKFLEHIPSTVMDIIKKICGL 109
            A HPSCC AIS  NDCSP+  +HIP   MD+IKKIC L
Sbjct: 71  VAPHPSCCKAISDLNDCSPEVYQHIPG--MDVIKKICSL 106

BLAST of Lag0034261 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 12  RLALVFLVCMVILAPQMTTHTVAEVVPDPSLTEDDSPNGCGPLILEATMCVGDIIKSPFA 71
           +L LVFLVC+ ILAP  T        P PS+ ++     C P ILEAT+CV  +IK P A
Sbjct: 2   KLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPIA 61

Query: 72  THPSCCNAISKANDCSPKFLEHIPSTVMDIIKKICGL 109
            HPSCC AISK  DC+P   + IPS+ M++IKK C L
Sbjct: 62  PHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10344.15.2e-2459.09hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa][more]
KAA0050064.18.9e-2459.09hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa][more]
KAA0050069.11.1e-2152.78hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... [more]
KAA0050068.13.3e-1855.56hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa][more]
TYK10334.11.2e-1750.52hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034261.1Lag0034261.1mRNA