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Lag0034212 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCTTAAAGAATGTAATGGAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGGTAGGCCATCTATATAGGATAGGAATATCCTTAAAGTTGTTTTACTCTAATGTTATAGGCTTAGATACTTGTGTGAGACCCGGATGCTCATGGATGACAAATGAATCCTCATAGTTTGGTGGCCACCCACATGAGATTTTTATCTTCTGAATTTCACGACATATAATTCTGTACGATTAGCTCATGCACACAGATTATTCTGGATGCTTTGCTTGCAAGTAGAAAAGGCCCTGGCAGCTTGGAATTTTTCTTCAGTATGTGACGATTAAACAACTGTGGGCCAAAAGACTATTTACCTTTCTTGAAAATTGGAAGGGAGGAAATAGCCCCTTCATTAGAAGTTAGAAAGAATCCTATAGAATCTCATGGCTGAGATTTTGCGCTTTCTTCAAAAGACATTATTGAGATTCTCATTGCAATTTCTTTGCTGTCAGGTCGGAGTTGGAAGGCTTCAGAACTGCGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAAACTTGCTTTCTATGTTTTGTTGTATTTGTTCCCTTCTCCTGCTCCTTCAGTTGTGTGATCATAGAGCTGTTAACAGTTCTCCTTTCACTACTTTTCTATTCTAATGTTGATGGTGGTTGCTGATGATTGCAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTCACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAATGCTCTGTGA ATGTCTCTTAAAGAATGTAATGGAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGATTATTCTGGATGCTTTGCTTGCAAGTAGAAAAGGCCCTGGCAGCTTGGAATTTTTCTTCAGTCGGAGTTGGAAGGCTTCAGAACTGCGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTCACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAATGCTCTGTGA ATGTCTCTTAAAGAATGTAATGGAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGATTATTCTGGATGCTTTGCTTGCAAGTAGAAAAGGCCCTGGCAGCTTGGAATTTTTCTTCAGTCGGAGTTGGAAGGCTTCAGAACTGCGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTCACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAATGCTCTGTGA MSLKECNGNFMRFGRFSLLIILDALLASRKGPGSLEFFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL Homology
BLAST of Lag0034212 vs. NCBI nr
Match: XP_006476735.1 (39S ribosomal protein L47, mitochondrial [Citrus sinensis]) HSP 1 Score: 177.2 bits (448), Expect = 9.1e-41 Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 0
BLAST of Lag0034212 vs. NCBI nr
Match: KDO69747.1 (hypothetical protein CISIN_1g032302mg [Citrus sinensis]) HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40 Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 0
BLAST of Lag0034212 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]) HSP 1 Score: 174.5 bits (441), Expect = 5.9e-40 Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Lag0034212 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 174.1 bits (440), Expect = 7.7e-40 Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Lag0034212 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima]) HSP 1 Score: 174.1 bits (440), Expect = 7.7e-40 Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 7.8e-11 Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10 Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2) HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10 Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09 Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0
BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08 Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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