Lag0034212 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034212
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	39S ribosomal protein L47, mitochondrial
Location	chr3: 5307393 .. 5308290 (+)
RNA-Seq Expression	Lag0034212
Synteny	Lag0034212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTTAAAGAATGTAATGGAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGGTAGGCCATCTATATAGGATAGGAATATCCTTAAAGTTGTTTTACTCTAATGTTATAGGCTTAGATACTTGTGTGAGACCCGGATGCTCATGGATGACAAATGAATCCTCATAGTTTGGTGGCCACCCACATGAGATTTTTATCTTCTGAATTTCACGACATATAATTCTGTACGATTAGCTCATGCACACAGATTATTCTGGATGCTTTGCTTGCAAGTAGAAAAGGCCCTGGCAGCTTGGAATTTTTCTTCAGTATGTGACGATTAAACAACTGTGGGCCAAAAGACTATTTACCTTTCTTGAAAATTGGAAGGGAGGAAATAGCCCCTTCATTAGAAGTTAGAAAGAATCCTATAGAATCTCATGGCTGAGATTTTGCGCTTTCTTCAAAAGACATTATTGAGATTCTCATTGCAATTTCTTTGCTGTCAGGTCGGAGTTGGAAGGCTTCAGAACTGCGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAAACTTGCTTTCTATGTTTTGTTGTATTTGTTCCCTTCTCCTGCTCCTTCAGTTGTGTGATCATAGAGCTGTTAACAGTTCTCCTTTCACTACTTTTCTATTCTAATGTTGATGGTGGTTGCTGATGATTGCAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTCACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAATGCTCTGTGA

mRNA sequence

ATGTCTCTTAAAGAATGTAATGGAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGATTATTCTGGATGCTTTGCTTGCAAGTAGAAAAGGCCCTGGCAGCTTGGAATTTTTCTTCAGTCGGAGTTGGAAGGCTTCAGAACTGCGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTCACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAATGCTCTGTGA

Coding sequence (CDS)

ATGTCTCTTAAAGAATGTAATGGAAATTTCATGAGATTTGGAAGGTTCTCCCTCTTGATTATTCTGGATGCTTTGCTTGCAAGTAGAAAAGGCCCTGGCAGCTTGGAATTTTTCTTCAGTCGGAGTTGGAAGGCTTCAGAACTGCGGCTTAAGTCTTGGGACGATCTCAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTCACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAATGCTCTGTGA

Protein sequence

MSLKECNGNFMRFGRFSLLIILDALLASRKGPGSLEFFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL

Homology

[Close]

BLAST of Lag0034212 vs. NCBI nr
Match: XP_006476735.1 (39S ribosomal protein L47, mitochondrial [Citrus sinensis])

HSP 1 Score: 177.2 bits (448), Expect = 9.1e-41
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 22  LDALLASRKGPGSLEFFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQN 81
           L+    + +GP   +  + RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQN
Sbjct: 38  LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQN 97

Query: 82  LRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL 128
           L+FPNPER+PKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Sbjct: 98  LKFPNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Lag0034212 vs. NCBI nr
Match: KDO69747.1 (hypothetical protein CISIN_1g032302mg [Citrus sinensis])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 22  LDALLASRKGPGSLEFFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQN 81
           L+    + +GP   +  + RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ+QML+AQN
Sbjct: 38  LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97

Query: 82  LRFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL 128
           L+FPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Sbjct: 98  LKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Lag0034212 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 174.5 bits (441), Expect = 5.9e-40
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 39  FSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 98
           + RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC
Sbjct: 55  YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 114

Query: 99  RIKQVLTERAIEEPDPRRSAEMKRMINAL 128
           RIKQVLTERAI+EPDPRRSAEMKRMINAL
Sbjct: 115 RIKQVLTERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Lag0034212 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 7.7e-40
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 39  FSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 98
           + RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC
Sbjct: 55  YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 114

Query: 99  RIKQVLTERAIEEPDPRRSAEMKRMINAL 128
           RIKQVLTERAI+EPDPRRSAEMKRM+NAL
Sbjct: 115 RIKQVLTERAIDEPDPRRSAEMKRMVNAL 143

[Close]

BLAST of Lag0034212 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 7.7e-40
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 39  FSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 98
           + RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC
Sbjct: 54  YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 113

Query: 99  RIKQVLTERAIEEPDPRRSAEMKRMINAL 128
           RIKQVLTERAI+EPDPRRSAEMKRM+NAL
Sbjct: 114 RIKQVLTERAIDEPDPRRSAEMKRMVNAL 142

[Close]

BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-11
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 42  SWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIK 101
           SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  + 
Sbjct: 86  SWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDNVD 145

Query: 102 QVLTER 108
           +V+ ER
Sbjct: 146 KVVQER 151

[Close]

BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 42  SWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIK 101
           SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  + 
Sbjct: 86  SWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDALD 145

Query: 102 QVLTER 108
           +V+ ER
Sbjct: 146 KVVQER 151

[Close]

BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 42  SWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIK 101
           +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  + 
Sbjct: 84  AWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMDALD 143

Query: 102 QVLTER 108
           +V+ ER
Sbjct: 144 KVVQER 149

[Close]

BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 32  PGSLEFFFSRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP--NPER 91
           P S E  F R+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER
Sbjct: 50  PPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEMKRLQLTIPKASNER 109

Query: 92  IPKVRKSMCRIKQVLTER 108
           +  V K+M  IK VL ER
Sbjct: 110 VLAVNKTMAAIKFVLWER 127

[Close]

BLAST of Lag0034212 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 41  RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNP---ERIPKVRKSM 100
           RSW A ELR KSWDDL++LW+V  KE+N + T     N   L F      ER   VR++M
Sbjct: 121 RSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERNKSGLGFGEAEMRERDNAVRQTM 180

Query: 101 CRIKQVLTERAIEEPDPRRSAE 120
             IK VLTER     D  + AE
Sbjct: 181 RSIKHVLTERFYTWEDAVKVAE 202

The following BLAST results are available for this feature:

BLAST of Lag0034212 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_006476735.1	9.1e-41	82.08	39S ribosomal protein L47, mitochondrial [Citrus sinensis]	[more]
KDO69747.1	2.0e-40	82.08	hypothetical protein CISIN_1g032302mg [Citrus sinensis]	[more]
XP_038879389.1	5.9e-40	96.63	39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S...	[more]
XP_023530690.1	7.7e-40	95.51	39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022988417.1	7.7e-40	95.51	39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ...	[more]

BLAST of Lag0034212 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K2Y7	7.8e-11	53.03	39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1...	[more]
Q08DT6	1.3e-10	53.03	39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV...	[more]
Q9HD33	3.0e-10	51.52	39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ...	[more]
P87232	1.5e-09	48.72	54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	[more]
Q2H080	1.6e-08	46.34	54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010729	Ribosomal protein L47, mitochondrial	PFAM	PF06984	MRP-L47	coord: 36..107 e-value: 2.0E-30 score: 104.8
IPR010729	Ribosomal protein L47, mitochondrial	PANTHER	PTHR21183	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	coord: 40..127
IPR038340	MRP-L47 superfamily, mitochondrial	GENE3D	6.10.330.20		coord: 29..117 e-value: 1.8E-27 score: 97.3
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 47..107 e-value: 9.1E-6 score: 23.6
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 46..107 e-value: 8.16314E-12 score: 54.4159
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 43..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034212.1	Lag0034212.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005761	mitochondrial ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome