Lag0034178 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034178
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionR2r3-myb transcription factor, putative
Locationchr3: 5061397 .. 5061744 (+)
RNA-Seq ExpressionLag0034178
SyntenyLag0034178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAATTCCTTCCTGTGACAAGTTGAACCTCAAAAGGGACCTTTGGACTGCAGAGGAAGATGCAAGAATACTTGCATACGTATTGAAGCACGGGACGAGCAACTGGACCTCAACTCCAAAGAAAGCAGGTTAATACTTTAAACTTGTTATGATTTGGATGATTTTTATACATAGTTCTATTTGGAGTCTACATTGATGCTTATGGATTCTGTGTTTGAGATGTTTCATAGGACTAAGGAGACGTGGAAAGAGCTGCAGACTTAGATGGACCTTGAGGCCAGATTTTAAGCATCATAACTTCACATCCCAAGAGGAGGAATTGATTATCAGGCTTCATGAATGA

mRNA sequence

ATGGCCAGAATTCCTTCCTGTGACAAGTTGAACCTCAAAAGGGACCTTTGGACTGCAGAGGAAGATGCAAGAATACTTGCATACGTATTGAAGCACGGGACGAGCAACTGGACCTCAACTCCAAAGAAAGCAGGACTAAGGAGACGTGGAAAGAGCTGCAGACTTAGATGGACCTTGAGGCCAGATTTTAAGCATCATAACTTCACATCCCAAGAGGAGGAATTGATTATCAGGCTTCATGAATGA

Coding sequence (CDS)

ATGGCCAGAATTCCTTCCTGTGACAAGTTGAACCTCAAAAGGGACCTTTGGACTGCAGAGGAAGATGCAAGAATACTTGCATACGTATTGAAGCACGGGACGAGCAACTGGACCTCAACTCCAAAGAAAGCAGGACTAAGGAGACGTGGAAAGAGCTGCAGACTTAGATGGACCTTGAGGCCAGATTTTAAGCATCATAACTTCACATCCCAAGAGGAGGAATTGATTATCAGGCTTCATGAATGA

Protein sequence

MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWTLRPDFKHHNFTSQEEELIIRLHE
Homology
BLAST of Lag0034178 vs. NCBI nr
Match: XP_011660334.2 (transcription factor MYB35 [Cucumis sativus] >KGN63635.1 hypothetical protein Csa_013697 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-33
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M RIPSCDKLNLKRDLWTAEEDA+ILAYV KHGTSNWTS PKKAGLRR GKSCRLRWT  
Sbjct: 1  MVRIPSCDKLNLKRDLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KH NFTSQEEELIIRLH
Sbjct: 61 LRPDLKHQNFTSQEEELIIRLH 82

BLAST of Lag0034178 vs. NCBI nr
Match: KAA0057914.1 (transcription factor MYB35-like [Cucumis melo var. makuwa] >TYJ98602.1 transcription factor MYB35-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-33
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M RIPSCDKLNLKRDLWTAEEDA+ILAYV KHGTSNWTS PKKAGLRR GKSCRLRWT  
Sbjct: 1  MVRIPSCDKLNLKRDLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KH NFTSQEEELIIRLH
Sbjct: 61 LRPDLKHQNFTSQEEELIIRLH 82

BLAST of Lag0034178 vs. NCBI nr
Match: XP_008453162.1 (PREDICTED: transcription factor MYB35-like [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-33
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M RIPSCDKLNLKRDLWTAEEDA+ILAYV KHGTSNWTS PKKAGLRR GKSCRLRWT  
Sbjct: 1  MVRIPSCDKLNLKRDLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KH NFTSQEEELIIRLH
Sbjct: 61 LRPDLKHQNFTSQEEELIIRLH 82

BLAST of Lag0034178 vs. NCBI nr
Match: XP_022135353.1 (transcription factor MYB35-like [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M R+PSCDKLNLKR LWTAEEDA+ILAYV KHGTSNWTS PKKAGLRR GKSCRLRWT  
Sbjct: 1  MVRVPSCDKLNLKRGLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KHHNFT QEEELI+RLH
Sbjct: 61 LRPDLKHHNFTPQEEELIVRLH 82

BLAST of Lag0034178 vs. NCBI nr
Match: XP_022988389.1 (transcription factor MYB35-like [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 3.8e-32
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M RIP CDKLNLKR LWTAEEDA+ILAYV KHGTSNWTS PKKAGLRR GKSCRLRWT  
Sbjct: 1  MVRIPCCDKLNLKRGLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTSY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KHHNFT QEEELIIRLH
Sbjct: 61 LRPDLKHHNFTPQEEELIIRLH 82

BLAST of Lag0034178 vs. ExPASy Swiss-Prot
Match: Q9LSI7 (Transcription factor MYB35 OS=Arabidopsis thaliana OX=3702 GN=MYB35 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M R P CDK N+K+ LWT EEDA+ILAYV  HG  NW+  PKKAGL R GKSCRLRWT  
Sbjct: 1  MGRPPCCDKSNVKKGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KH +F++QEEELII  H
Sbjct: 61 LRPDLKHDSFSTQEEELIIECH 82

BLAST of Lag0034178 vs. ExPASy Swiss-Prot
Match: Q7XQN1 (Transcription factor MYB80 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB80 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-22
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M R+P C+K N+KR  WT EED ++L+Y+ ++GT NW   PK AGL+R GKSCRLRWT  
Sbjct: 1  MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTRNWRLIPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KH  FT  EE+ II+LH
Sbjct: 61 LRPDLKHGEFTDAEEQTIIKLH 82

BLAST of Lag0034178 vs. ExPASy Swiss-Prot
Match: Q9XHV0 (Transcription factor MYB80 OS=Arabidopsis thaliana OX=3702 GN=MYB80 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-22
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M RIP C+K N+KR  WT EED ++ +Y+ +HGT NW   PK AGL+R GKSCRLRWT  
Sbjct: 1  MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD KH  F+  EE +I++ H
Sbjct: 61 LRPDLKHGQFSEAEEHIIVKFH 82

BLAST of Lag0034178 vs. ExPASy Swiss-Prot
Match: Q9LE63 (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.3e-22
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M R P CDK  LK+  WT EED ++LAY+ +HG  +W S P+KAGL+R GKSCRLRWT  
Sbjct: 1  MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD K   FT QEE+ II+LH
Sbjct: 61 LRPDIKRGKFTVQEEQTIIQLH 82

BLAST of Lag0034178 vs. ExPASy Swiss-Prot
Match: Q9LXF1 (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.2e-22
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MARIPSCDKLNLKRDLWTAEEDARILAYVLKHGTSNWTSTPKKAGLRRRGKSCRLRWT-- 60
          M R P CDKL LK+  WT EED ++LAY+ +HG  +W S P+KAGL R GKSCRLRWT  
Sbjct: 1  MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNY 60

Query: 61 LRPDFKHHNFTSQEEELIIRLH 81
          LRPD K   F  QEE+ II+LH
Sbjct: 61 LRPDIKRGKFNLQEEQTIIQLH 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011660334.23.4e-3389.02transcription factor MYB35 [Cucumis sativus] >KGN63635.1 hypothetical protein Cs... [more]
KAA0057914.13.4e-3389.02transcription factor MYB35-like [Cucumis melo var. makuwa] >TYJ98602.1 transcrip... [more]
XP_008453162.13.4e-3389.02PREDICTED: transcription factor MYB35-like [Cucumis melo][more]
XP_022135353.11.7e-3285.37transcription factor MYB35-like [Momordica charantia][more]
XP_022988389.13.8e-3286.59transcription factor MYB35-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9LSI71.6e-2567.07Transcription factor MYB35 OS=Arabidopsis thaliana OX=3702 GN=MYB35 PE=1 SV=1[more]
Q7XQN11.3e-2258.54Transcription factor MYB80 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB80 PE=... [more]
Q9XHV04.8e-2256.10Transcription factor MYB80 OS=Arabidopsis thaliana OX=3702 GN=MYB80 PE=1 SV=1[more]
Q9LE636.3e-2259.76Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1[more]
Q9LXF18.2e-2259.76Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 13..63
e-value: 1.4E-5
score: 34.6
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 9..57
score: 9.221654
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 17..57
e-value: 3.4272E-6
score: 37.9402
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 16..57
e-value: 1.2E-10
score: 41.4
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 9..65
score: 15.420409
NoneNo IPR availableGENE3D1.10.10.60coord: 6..65
e-value: 1.2E-13
score: 52.7
NoneNo IPR availablePANTHERPTHR47994F14D16.11-RELATEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR47994:SF5F14D16.11-RELATEDcoord: 1..81
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 16..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034178.1Lag0034178.1mRNA