Lag0034071 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034071
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 4151569 .. 4152077 (-)
RNA-Seq ExpressionLag0034071
SyntenyLag0034071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATAAAGGACCGATGGCTCAATCTCCGCAGTTGTCAGGAGGTGGACTTGGATCTGATATGTGTTGGTGCTTGGACAATTTGGAATCATAGAAATAATGCGCTACCTAATCATCCTATTCCCAGCATTGAGGTTAGGTGTGCGTGGATTTATGATTATCTAAATGAGTTTCGGAAGGAAAATGGGGTTAGTGACCCCTTTTCATTGTTAGGTGCGGCAATCCAAGAGTTGATTGACAAATGAGAGAGGAGACCATTATGCATTCTAATGTGGCTTTTGATGAACCTAACTGGACGTCTGGAATTGGGGTAGTGCTTCGTGATAAGCAGGGTGAGTTGAAAGAGGATTTGTCTTTGTCATCCTAGATTTGCACTACTCCTTTATGTGCTGAAACGATAGCAGTGCTAGAGTGGCTTCAGTTTGCAAGTAGTTTGAATGTGGAAAGCGTGATGGTGATGTTAGATTCCCTCTTATTGGTTCAAGCCATTAGAAGTGGACCAATGTGA

mRNA sequence

ATGGACATAAAGGACCGATGGCTCAATCTCCGCAGTTGTCAGGAGGTGGACTTGGATCTGATATGTGTTGGTGCTTGGACAATTTGGAATCATAGAAATAATGCGCTACCTAATCATCCTATTCCCAGCATTGAGATTTGCACTACTCCTTTATGTGCTGAAACGATAGCAGTGCTAGAGTGGCTTCAGTTTGCAAGTAGTTTGAATGTGGAAAGCGTGATGGTGATGTTAGATTCCCTCTTATTGGTTCAAGCCATTAGAAGTGGACCAATGTGA

Coding sequence (CDS)

ATGGACATAAAGGACCGATGGCTCAATCTCCGCAGTTGTCAGGAGGTGGACTTGGATCTGATATGTGTTGGTGCTTGGACAATTTGGAATCATAGAAATAATGCGCTACCTAATCATCCTATTCCCAGCATTGAGATTTGCACTACTCCTTTATGTGCTGAAACGATAGCAGTGCTAGAGTGGCTTCAGTTTGCAAGTAGTTTGAATGTGGAAAGCGTGATGGTGATGTTAGATTCCCTCTTATTGGTTCAAGCCATTAGAAGTGGACCAATGTGA

Protein sequence

MDIKDRWLNLRSCQEVDLDLICVGAWTIWNHRNNALPNHPIPSIEICTTPLCAETIAVLEWLQFASSLNVESVMVMLDSLLLVQAIRSGPM
Homology
The following BLAST results are available for this feature:
BLAST of Lag0034071 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0034071 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 25..88
e-value: 9.0E-5
score: 22.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034071.1Lag0034071.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity