Lag0033979 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033979
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PsbP domain-containing protein
Location	chr3: 3437174 .. 3439314 (+)
RNA-Seq Expression	Lag0033979
Synteny	Lag0033979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAGAGAGAATAAGTGGAGGAAAGAAGAATAAGAAAGGAGGAAAAAAACACACAGTCGCCGACAGCGACGAGCGGTGGTCGTCGACCGCTGACGATTTGAAGAAGAAGAATGAAGAGGTTGAGAATAAGAGGTTGAAGAAAATAAGAAAGGAGAAGAACAAGGGGAGGGAGAATGAATTAAAAAAAGGGCAAATTGCAAAAACCACTATGATGTTTGTAACAATTACACCCTAAAGTTTCAATTGTAAAAATTAAACCCTTCAACTTTCAAAAGTGTAAAAATTAGAACCCTAAACTTTTGAATGGTAAAATTAATCCCCCAACCTATCATAAATGTAAAAATTGAGTCAATTTCATATTTCTCTTCTCTCCCCTATTTCTTCTCTCTTCTTTCTCCCTCTACCTCTTCATCCCTCCATCACCCACTCTCTCTACTTTCTCCCTCTAACTATCCCTCCTTCATCCTCTCTGTAATTCGAACACACACCGAGTTCTTCAATTCGCCAAAGGATTCCAAGCACTTTCCCTTCTCTGCGGTGGCCCGTCGATTCATTCCCAAAATGCCGCTCCTCACTCTGCTCTGAATCTCAATCGGTAATTCTTCCAAAAACAAACTACGCTATCTAATCCAACCAATTCGACCATGTAATCTGCAACTTGTTACTTGCATTTATCGTTGTAGCTTTCTAATATGCAATCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAAGCAATGGCATTGATCTTGTCGACTTGTATTTTCTCCAATGCTGCATTGGCTGAGCCATCTGTTGGATTATTGGAATACAATGACACTTTTGATGGCTATTCGTTAAAGTCCCCTAAGAATTGGAATCAAGTTAGAGGGAGAAAGTAGAGAGAGAGTGGGTGATGGAAGGGATGAAGAGGTAGAGGGAGAAAGAGAGGGAGAAAAGAAGGGAGAGAAGGAGAAATATGAAATGGACTCAATTTTTACATTTATAACAGGTTGGGGGTTTAATTTTATCATTGAAAAGTTTAGGGTTCTAATTTTTAGACTTTTGAAAGTTGAAGGGTTTAATTTTTACAATTGAAACTTTAAGGGTGTAATTATTACAAACATTATATTCAGGGGTGGTTTTTGCAATTTACCCTTAAAAAAATAATAAAATAATAATATTTATATCATTTTAATATAATTTATTTAGAAAAAAATTAATGTAACAAAATTCAAACCTCGTGGTTATCAGTATATCGTTATGCTAGTTGAGCTATACTCTTGTTGACTCACTTGAGTTACTAATTGGTGGAATATAGGTCAATCCGAATTTTTTTTGAATGATATTCAAGAAAAGAGTATTATAAAAAAAGTTATAGAATTAGAGGAACTATTTCACTTGGACGAAATGCTAAAGTAACACAGAGCTTAGCTCAATTGACATAAAGTCATCCAGAAACACATCTACAAAAGTTTGAACATAGTTCAATACTTGACTAAGGGGTTGTTTGGTGCGTTGGATTGGTTATAATAATAGTTTGGAGGTTATAATATTTTGGAGTTAAATAGTATGAGTTACGAATTATTTTAGTCAGTATTGTTTTCATATATGTTTTTCTAAAAAAAGAAAGCGCATACGCAACTCTGTTATGGAGTTTCCTGGTTGGTCGTCCAATGTGGCCACTAAAGATCATCCATTGTTCAACCAATTGTTTCTTCTCCTCCATTGTTAAATCTCAGTTGAAGATCATCAACAGTTAGGGTTTGGCCATGAGAACAGTGGCAACTTCTCTACTGCTAAAAGTTGGAGTGAGGATCAACGTTGATACTCGATTGCAAATACGAAATACCTCCACTAATCGTGGAGCTCCACAGGAGGATATCGTTAGTCATTTCGTTACGTGATGAATGAGTCAACAGGGTCAAATTCATCATGATTTTATAACCAAATCGTTTTCATATTCTTCTTTTCCAATTAAAAATAGCCGATTCTTGTTGAAACTCCGAATCGAGCGAGCTGGATCTGATTCTGTTGTCTGAGAATTAAAGCCTCTCGATAGGAACTATTCGACTGGCTTTTCCAGCAAGGCTATCGTTTGCCCGTCCTTTGCTTCAATCTCAGTCTATTCCATTCGAGCCTTCAGTTTTCATGGTTTAG

mRNA sequence

ATGAGAGAAGAGAGAATAAGTGGAGGAAAGAAGAATAAGAAAGGAGGAAAAAAACACACAGTCGCCGACAGCGACGAGCGGTGGTCGTCGACCGCTGACGATTTGAAGAAGAAGAATGAAGAGGTTGAGAATAAGAGTTCCGAGGAGGAAGCAATGGCATTGATCTTGTCGACTTGTATTTTCTCCAATGCTGCATTGGCTGAGCCATCTGTTGGATTATTGGAATACAATGACACTTTTGATGGCTATTCGTTAAAGTCCCCTAAGAATTGGAATCAAGGTTTGGCCATGAGAACAGTGGCAACTTCTCTACTGCTAAAAGTTGGAGTGAGGATCAACGTTGATACTCGATTGCAAATACGAAATACCTCCACTAATCGTGGAGCTCCACAGGAGGATATCGTTAGAACTATTCGACTGGCTTTTCCAGCAAGGCTATCGTTTGCCCGTCCTTTGCTTCAATCTCAGTCTATTCCATTCGAGCCTTCAGTTTTCATGGTTTAG

Coding sequence (CDS)

ATGAGAGAAGAGAGAATAAGTGGAGGAAAGAAGAATAAGAAAGGAGGAAAAAAACACACAGTCGCCGACAGCGACGAGCGGTGGTCGTCGACCGCTGACGATTTGAAGAAGAAGAATGAAGAGGTTGAGAATAAGAGTTCCGAGGAGGAAGCAATGGCATTGATCTTGTCGACTTGTATTTTCTCCAATGCTGCATTGGCTGAGCCATCTGTTGGATTATTGGAATACAATGACACTTTTGATGGCTATTCGTTAAAGTCCCCTAAGAATTGGAATCAAGGTTTGGCCATGAGAACAGTGGCAACTTCTCTACTGCTAAAAGTTGGAGTGAGGATCAACGTTGATACTCGATTGCAAATACGAAATACCTCCACTAATCGTGGAGCTCCACAGGAGGATATCGTTAGAACTATTCGACTGGCTTTTCCAGCAAGGCTATCGTTTGCCCGTCCTTTGCTTCAATCTCAGTCTATTCCATTCGAGCCTTCAGTTTTCATGGTTTAG

Protein sequence

MREERISGGKKNKKGGKKHTVADSDERWSSTADDLKKKNEEVENKSSEEEAMALILSTCIFSNAALAEPSVGLLEYNDTFDGYSLKSPKNWNQGLAMRTVATSLLLKVGVRINVDTRLQIRNTSTNRGAPQEDIVRTIRLAFPARLSFARPLLQSQSIPFEPSVFMV

Homology

[Close]

BLAST of Lag0033979 vs. NCBI nr
Match: XP_016903181.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-10
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 51 AMALILSTCIFSNAALAEPSVGLLEYNDTFDGYSLKSPKNWNQ 94
          AMALILSTCIFSN+A A PSVGLLEY DTFDGYS K PKNW Q
Sbjct: 16 AMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQ 58

[Close]

BLAST of Lag0033979 vs. NCBI nr
Match: XP_008464319.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo] >KAA0035717.1 psbP domain-containing protein 1 [Cucumis melo var. makuwa] >TYK30829.1 psbP domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-10
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 51 AMALILSTCIFSNAALAEPSVGLLEYNDTFDGYSLKSPKNWNQ 94
          AMALILSTCIFSN+A A PSVGLLEY DTFDGYS K PKNW Q
Sbjct: 56 AMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQ 98

[Close]

BLAST of Lag0033979 vs. NCBI nr
Match: XP_022961486.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024032.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 19  HTVADSDERWSSTA---------DDLKKKNEEVENKSS--------EEEAMALILSTCIF 78
           HT++ S  +W  TA         D   K    + ++S            AMALILS+CIF
Sbjct: 13  HTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRRSAMALILSSCIF 72

Query: 79  SNAALAEPSVGLLEYNDTFDGYSLKSPKNWNQGLAMRTVATSLLLKVGVRINVDTRLQIR 135
           SN+ALAE SVGLLEY DTFDGYS   PKNW Q   +R     +  +    ++ +  ++  
Sbjct: 73  SNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQ---VRGAGADIFFRDPFVLDENISVEFS 132

[Close]

BLAST of Lag0033979 vs. NCBI nr
Match: XP_022968780.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 19  HTVADSDERWSSTA---------DDLKKKNEEVENKSS--------EEEAMALILSTCIF 78
           HT++ S  +W  TA         D   K    + ++S            AMALILS+CIF
Sbjct: 13  HTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRRSAMALILSSCIF 72

Query: 79  SNAALAEPSVGLLEYNDTFDGYSLKSPKNWNQGLAMRTVATSLLLKVGVRINVDTRLQIR 135
           SN+A+AE SVGLLEY DTFDGYS   PKNW Q   +R     +  +    ++ +  ++  
Sbjct: 73  SNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQ---VRGAGADIFFRDPFVLDENISVEFS 132

[Close]

BLAST of Lag0033979 vs. NCBI nr
Match: XP_004139523.1 (psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KAE8652838.1 hypothetical protein Csa_022829 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 51 AMALILSTCIFSNAALAEPSVGLLEYNDTFDGYSLKSPKNWNQ 94
          AMAL+LSTCIFSN+ALA  SVGLLEY DTFDGYS K PKNW Q
Sbjct: 56 AMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQ 98

The following BLAST results are available for this feature:

BLAST of Lag0033979 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903181.1	8.4e-10	83.72	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis m...	[more]
XP_008464319.1	8.4e-10	83.72	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
XP_022961486.1	5.4e-09	36.84	psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498...	[more]
XP_022968780.1	5.4e-09	36.09	psbP domain-containing protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_004139523.1	5.4e-09	81.40	psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KA...	[more]

BLAST of Lag0033979 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033979.1	Lag0033979.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding