Lag0033936 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033936
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein FAM110A like
Locationchr3: 3082125 .. 3082586 (+)
RNA-Seq ExpressionLag0033936
SyntenyLag0033936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGGAAGGTCCTCCTCCGATCTCCGGCTATCGTCCGTCACCAAGCGTCGCCTAAAGACGAGAAAATCGACACGCCGAGAGAGAGGCGGCAGTTCGCGGAGGTTGCCGGCGGTTCGGCGGCGGAATGCACGGCGATTTGCTGTTGCTGTCCATGGACGCTGTTGAACCTCGTGATCTTTGCCATCTACCGGATGCCGGCGGGGCTCTGCCGGAAGGCGATAAACAGGAGAAAACGACACCGTAAAATGAAGAACAAGAAGTATCTCATCCAGCAACGGAAGAACGTCTCTCAGGATTTCACAGATGGATCGGTGGGGCCCGCAATGGAAGGTTTTGAGGCCCACAAGATGACCGATGACGTGGCAAATGGCGAAGATTTGATGAAGTTAGAAGAGGAAATGTGGGGCCGGTTCAACCAGACCGGGTTTTGGAGGAGTTCTTCTCAAAGACAGGAGTAA

mRNA sequence

ATGGCTCGGAAGGTCCTCCTCCGATCTCCGGCTATCGTCCGTCACCAAGCGTCGCCTAAAGACGAGAAAATCGACACGCCGAGAGAGAGGCGGCAGTTCGCGGAGGTTGCCGGCGGTTCGGCGGCGGAATGCACGGCGATTTGCTGTTGCTGTCCATGGACGCTGTTGAACCTCGTGATCTTTGCCATCTACCGGATGCCGGCGGGGCTCTGCCGGAAGGCGATAAACAGGAGAAAACGACACCGTAAAATGAAGAACAAGAAGTATCTCATCCAGCAACGGAAGAACGTCTCTCAGGATTTCACAGATGGATCGGTGGGGCCCGCAATGGAAGGTTTTGAGGCCCACAAGATGACCGATGACGTGGCAAATGGCGAAGATTTGATGAAGTTAGAAGAGGAAATGTGGGGCCGGTTCAACCAGACCGGGTTTTGGAGGAGTTCTTCTCAAAGACAGGAGTAA

Coding sequence (CDS)

ATGGCTCGGAAGGTCCTCCTCCGATCTCCGGCTATCGTCCGTCACCAAGCGTCGCCTAAAGACGAGAAAATCGACACGCCGAGAGAGAGGCGGCAGTTCGCGGAGGTTGCCGGCGGTTCGGCGGCGGAATGCACGGCGATTTGCTGTTGCTGTCCATGGACGCTGTTGAACCTCGTGATCTTTGCCATCTACCGGATGCCGGCGGGGCTCTGCCGGAAGGCGATAAACAGGAGAAAACGACACCGTAAAATGAAGAACAAGAAGTATCTCATCCAGCAACGGAAGAACGTCTCTCAGGATTTCACAGATGGATCGGTGGGGCCCGCAATGGAAGGTTTTGAGGCCCACAAGATGACCGATGACGTGGCAAATGGCGAAGATTTGATGAAGTTAGAAGAGGAAATGTGGGGCCGGTTCAACCAGACCGGGTTTTGGAGGAGTTCTTCTCAAAGACAGGAGTAA

Protein sequence

MARKVLLRSPAIVRHQASPKDEKIDTPRERRQFAEVAGGSAAECTAICCCCPWTLLNLVIFAIYRMPAGLCRKAINRRKRHRKMKNKKYLIQQRKNVSQDFTDGSVGPAMEGFEAHKMTDDVANGEDLMKLEEEMWGRFNQTGFWRSSSQRQE
Homology
BLAST of Lag0033936 vs. NCBI nr
Match: XP_038879203.1 (uncharacterized protein LOC120071168 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 124/154 (80.52%), Postives = 135/154 (87.66%), Query Frame = 0

Query: 1   MARKVLLRSPAIVRHQASPKDEKIDTPRERRQFAEVAGGSAAECTAICCCCPWTLLNLVI 60
           M RKVLLRSPA +RH++   DEKID P+ERRQFAEVAGGSAAECTAICCCCPWT++N+VI
Sbjct: 1   MTRKVLLRSPA-MRHES---DEKIDAPQERRQFAEVAGGSAAECTAICCCCPWTVMNIVI 60

Query: 61  FAIYRMPAGLCRKAINRRKRHRKMKNKKYLIQQRKNVSQDFTDGSVG-PAMEGFEAHKMT 120
           FA+YRMPAGLCRKA+NRRKRHRKMK KK LIQQRK VS DFTDGSVG P ME  EAHK  
Sbjct: 61  FAVYRMPAGLCRKAMNRRKRHRKMK-KKCLIQQRKAVSMDFTDGSVGPPPMESVEAHKRP 120

Query: 121 DDVANGEDLMKLEEEMWGRFNQTGFWRSSSQRQE 154
           +DVA+ EDL KLEEEMWGRFNQTGFWRSSSQR E
Sbjct: 121 NDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 149

BLAST of Lag0033936 vs. NCBI nr
Match: KGN63891.1 (hypothetical protein Csa_014343 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-57
Identity = 117/153 (76.47%), Postives = 135/153 (88.24%), Query Frame = 0

Query: 1   MARKVLLRSPAIVRHQASPKDEKIDTPRERRQFAEVAGGSAAECTAICCCCPWTLLNLVI 60
           M RKVLLRS AI RH++  +D KID PRERRQFAEVAGGSAAECTA+CCCCPWT+LN++I
Sbjct: 1   MTRKVLLRSAAI-RHRSPLRDGKIDAPRERRQFAEVAGGSAAECTAVCCCCPWTVLNILI 60

Query: 61  FAIYRMPAGLCRKAINRRKRHRKMKNKKYLIQQRKNVSQDFTDGSVGPAMEGFEAHKMTD 120
           FAIYRMPAGLCRKAINRRKRHR+MK +KYLIQQRK  S+DFTDGSVGP ++G+  H+  +
Sbjct: 61  FAIYRMPAGLCRKAINRRKRHRRMK-RKYLIQQRKAASEDFTDGSVGPIIDGYGTHE-AN 120

Query: 121 DVANGEDLMKLEEEMWGRFNQTGFWRSSSQRQE 154
           DVA GEDL KLE+EMWGRF+QTGFWRSSSQR +
Sbjct: 121 DVAAGEDLKKLEDEMWGRFSQTGFWRSSSQRHK 150

BLAST of Lag0033936 vs. NCBI nr
Match: TYK28512.1 (hypothetical protein E5676_scaffold629G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-55
Identity = 114/148 (77.03%), Postives = 131/148 (88.51%), Query Frame = 0

Query: 1   MARKVLLRSPAIVRHQASPKDEKIDTPRERRQFAEVAGGSAAECTAICCCCPWTLLNLVI 60
           M RKVLLRS A VRH++S +D KID P+ERRQFAEVAGGSAAECTA+CCCCPWT+LN+ I
Sbjct: 1   MTRKVLLRSQA-VRHRSSLQDGKIDAPQERRQFAEVAGGSAAECTAVCCCCPWTVLNIFI 60

Query: 61  FAIYRMPAGLCRKAINRRKRHRKMKNKKYLIQQRKNVSQDFTDGSVGPAMEGFEAHKMTD 120
           FAIYRMPAGLCRKAINRRKRHR+MK +KYLIQQRK V+ DFTDGSVGP ++ F  H+ T+
Sbjct: 61  FAIYRMPAGLCRKAINRRKRHRRMK-RKYLIQQRKAVAMDFTDGSVGPIIDSFGTHE-TN 120

Query: 121 DVANGEDLMKLEEEMWGRFNQTGFWRSS 149
           DVA+ EDL KLEEEMWGRF+QTGFWR+S
Sbjct: 121 DVADSEDLKKLEEEMWGRFSQTGFWRTS 145

BLAST of Lag0033936 vs. NCBI nr
Match: KAG6587694.1 (hypothetical protein SDJN03_16259, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021660.1 hypothetical protein SDJN02_15386, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.7e-55
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 0

Query: 1   MARKVLLRSPAIVRHQASPKDEKIDTPRERRQFAEVAGGSAAECTAICCCCPWTLLNLVI 60
           MARKVLLRS AI R  +S K EK D  R++RQFAE+AGGSAA+CT ICCCCPWT++NLVI
Sbjct: 1   MARKVLLRSQAIERQSSSQKSEKSDASRDKRQFAELAGGSAADCTIICCCCPWTVMNLVI 60

Query: 61  FAIYRMPAGLCRKAINRRKRHRKMKNKKYLIQQRKNVSQDFTDGSVGPAMEGFEAHKMTD 120
           FA+YRMP GLCRKA+NRRKRHR++K +K LIQQRK VSQ+F D SV PA+E FEA K  +
Sbjct: 61  FAVYRMPLGLCRKAMNRRKRHRRLK-RKCLIQQRKAVSQEFEDASVEPALESFEATKQAN 120

Query: 121 DVANGEDLMKLEEEMWGRFNQTGFWRSSSQRQE 154
           D A+GED+ KLEEEMWGRFNQTGFWRSSSQR E
Sbjct: 121 DAAHGEDMNKLEEEMWGRFNQTGFWRSSSQRHE 152

BLAST of Lag0033936 vs. NCBI nr
Match: KAA0058153.1 (hypothetical protein E6C27_scaffold274G004700 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.7e-55
Identity = 113/148 (76.35%), Postives = 132/148 (89.19%), Query Frame = 0

Query: 1   MARKVLLRSPAIVRHQASPKDEKIDTPRERRQFAEVAGGSAAECTAICCCCPWTLLNLVI 60
           M RKVLLRS A VRH++S +D KID P+ERRQFAEVAGGSAAECTA+CCCCPWT+LN++I
Sbjct: 1   MTRKVLLRSQA-VRHRSSLQDGKIDAPQERRQFAEVAGGSAAECTAVCCCCPWTVLNILI 60

Query: 61  FAIYRMPAGLCRKAINRRKRHRKMKNKKYLIQQRKNVSQDFTDGSVGPAMEGFEAHKMTD 120
           F+IYRMPAGLCRKAINRRKRHR+MK +KYLIQQRK V+ DFTDGSVGP ++ F  H+ T+
Sbjct: 61  FSIYRMPAGLCRKAINRRKRHRRMK-RKYLIQQRKAVAMDFTDGSVGPIIDSFGTHQ-TN 120

Query: 121 DVANGEDLMKLEEEMWGRFNQTGFWRSS 149
           DVA+ EDL KLEEEMWGRF+QTGFWR+S
Sbjct: 121 DVADSEDLKKLEEEMWGRFSQTGFWRTS 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038879203.11.5e-5880.52uncharacterized protein LOC120071168 [Benincasa hispida][more]
KGN63891.12.9e-5776.47hypothetical protein Csa_014343 [Cucumis sativus][more]
TYK28512.12.1e-5577.03hypothetical protein E5676_scaffold629G001510 [Cucumis melo var. makuwa][more]
KAG6587694.12.7e-5573.20hypothetical protein SDJN03_16259, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0058153.12.7e-5576.35hypothetical protein E6C27_scaffold274G004700 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264EXPRESSED PROTEINcoord: 1..152
NoneNo IPR availablePANTHERPTHR33264:SF36SUBFAMILY NOT NAMEDcoord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033936.1Lag0033936.1mRNA