Lag0033895 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033895
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transmembrane protein 230
Location	chr3: 2766975 .. 2767373 (+)
RNA-Seq Expression	Lag0033895
Synteny	Lag0033895

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTACGTGGACCATGCGTTTTCGATTACAGACGAGGACATTATGATGGATTCTCCGTATACGGTCAACAATCGCCCCCCTGTCAAGGAGATCGCTCTTGCCGTTTCTCTTCTCGTTTTTGGCATGCTTGGAATCATCGTTGGTACCTTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGTACTTTTCTTTTTCTGCTTTGTGTTTTTGCTGCAATTTTGCCCTAGTTCGAATGTAAATTTATGCTCTGTTCTTGAAAATATTCAGGGGTGTTTTTCTCGCTGTTGGGAGCTCTCTTGTTTATTCCGGGTTTCTATTACACTCGGATTGCTTACTATGCTTACAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCTCCTGTCTAA

mRNA sequence

ATGGCGTACGTGGACCATGCGTTTTCGATTACAGACGAGGACATTATGATGGATTCTCCGTATACGGTCAACAATCGCCCCCCTGTCAAGGAGATCGCTCTTGCCGTTTCTCTTCTCGTTTTTGGCATGCTTGGAATCATCGTTGGTACCTTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTTTTCTCGCTGTTGGGAGCTCTCTTGTTTATTCCGGGTTTCTATTACACTCGGATTGCTTACTATGCTTACAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCTCCTGTCTAA

Coding sequence (CDS)

ATGGCGTACGTGGACCATGCGTTTTCGATTACAGACGAGGACATTATGATGGATTCTCCGTATACGGTCAACAATCGCCCCCCTGTCAAGGAGATCGCTCTTGCCGTTTCTCTTCTCGTTTTTGGCATGCTTGGAATCATCGTTGGTACCTTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTTTTCTCGCTGTTGGGAGCTCTCTTGTTTATTCCGGGTTTCTATTACACTCGGATTGCTTACTATGCTTACAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCTCCTGTCTAA

Protein sequence

MAYVDHAFSITDEDIMMDSPYTVNNRPPVKEIALAVSLLVFGMLGIIVGTFMASNRVGGDRAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV

Homology

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BLAST of Lag0033895 vs. NCBI nr
Match: XP_038879685.1 (transmembrane protein 230 [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MAYVDHAFSITDEDIMMDSPYTVNNRPPVKEIALAVSLLVFGMLGIIVGTFMASNRVGGD 60
           MAYVDHAFSITDEDIMMDSP+TVNNRPP+KEIALAVSLLVFGM+GI+VG FMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

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BLAST of Lag0033895 vs. NCBI nr
Match: XP_008453547.1 (PREDICTED: transmembrane protein 230-like [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-48
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MAYVDHAFSITDEDIMMDSPYTVNNRPPVKEIALAVSLLVFGMLGIIVGTFMASNRVGGD 60
           MAYVDHAFSITDEDIMMDSP+TVNNRPP+KEIALAVSLLVFGM+GIIVG FMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of Lag0033895 vs. NCBI nr
Match: XP_022931504.1 (transmembrane protein 230-like [Cucurbita moschata] >XP_022972056.1 transmembrane protein 230-like [Cucurbita maxima] >XP_023529399.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >KAG6587719.1 Transmembrane protein 230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.1 bits (510), Expect = 4.8e-48
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MAYVDHAFSITDEDIMMDSPYTVNNRPPVKEIALAVSLLVFGMLGIIVGTFMASNRVGGD 60
           MAYVDHAFSITDEDIMMDSP+TVNNRPP+KEIALAVSLL FGM+GIIVG FMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLFFGMIGIIVGIFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of Lag0033895 vs. NCBI nr
Match: KAG7021684.1 (Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 6.2e-48
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MAYVDHAFSITDEDIMMDSPYTVNNRPPVKEIALAVSLLVFGMLGIIVGTFMASNRVGGD 60
           MAYVDHAFSITDEDIMMDSP+TVNNRPP+KEIALAVSLL FGM+GI+VG FMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLFFGMIGIVVGIFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of Lag0033895 vs. NCBI nr
Match: XP_004146339.1 (transmembrane protein 230 [Cucumis sativus] >KGN65495.1 hypothetical protein Csa_019721 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.2e-48
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MAYVDHAFSITDEDIMMDSPYTVNNRPPVKEIALAVSLLVFGMLGIIVGTFMASNRVGGD 60
           MAYVDHAFSITDEDIMMDSP+TVNNRPP+KEIALAVSLLVFGM+GIIVG FMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           R HGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

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BLAST of Lag0033895 vs. ExPASy Swiss-Prot
Match: Q5R8X3 (Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 28  PVKEIALAVSLLVFGMLGIIVGTFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   II+G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of Lag0033895 vs. ExPASy Swiss-Prot
Match: Q96A57 (Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-11
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 28  PVKEIALAVSLLVFGMLGIIVGTFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   II+G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of Lag0033895 vs. ExPASy Swiss-Prot
Match: Q8CIB6 (Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-11
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 28  PVKEIALAVSLLVFGMLGIIVGTFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   II+G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of Lag0033895 vs. ExPASy Swiss-Prot
Match: Q5BJP5 (Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-11
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 28  PVKEIALAVSLLVFGMLGIIVGTFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   II+G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of Lag0033895 vs. ExPASy Swiss-Prot
Match: Q5ZLH4 (Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 28  PVKEIALAVSLLVFGMLGIIVGTFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALAV L + G   II+G  + +  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

The following BLAST results are available for this feature:

BLAST of Lag0033895 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879685.1	1.3e-48	95.15	transmembrane protein 230 [Benincasa hispida]	[more]
XP_008453547.1	2.8e-48	95.15	PREDICTED: transmembrane protein 230-like [Cucumis melo]	[more]
XP_022931504.1	4.8e-48	95.15	transmembrane protein 230-like [Cucurbita moschata] >XP_022972056.1 transmembran...	[more]
KAG7021684.1	6.2e-48	94.17	Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004146339.1	8.2e-48	94.17	transmembrane protein 230 [Cucumis sativus] >KGN65495.1 hypothetical protein Csa...	[more]

BLAST of Lag0033895 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5R8X3	4.9e-11	48.05	Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1	[more]
Q96A57	8.3e-11	48.05	Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1	[more]
Q8CIB6	8.3e-11	48.05	Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1	[more]
Q5BJP5	8.3e-11	48.05	Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1	[more]
Q5ZLH4	1.4e-10	48.05	Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Transmembrane protein 230/134	PFAM	PF05915	DUF872	coord: 29..101 e-value: 4.5E-17 score: 62.3
None	No IPR available	PANTHER	PTHR15664:SF18	TRANSMEMBRANE PROTEIN 230-LIKE	coord: 1..103
IPR044234	Transmembrane protein 230	PANTHER	PTHR15664	C20ORF30 PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033895.1	Lag0033895.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005776	autophagosome
cellular_component	GO:0005768	endosome
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane