Lag0033892 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033892
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCyclin-dependent protein kinase inhibitor SMR6-like protein
Locationchr3: 2753586 .. 2753897 (+)
RNA-Seq ExpressionLag0033892
SyntenyLag0033892
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGGAGCTTCTCGAAGAATTCCGCCCACTTACCCCTTTAAGATCATCATCACTTCAACTTCCCAAAGACAAAACCGATCAACATCATCTTCAACAACAACCAGAAGAAGAATGCCACACGCCCACCGCCGCCGCCAGCCGCCTCAAGCCGTCCATCCAGTGCCCGCCGGCGCCCAAGAAACCTCGCCCTCGTCGAAGAAAATTGAACTTTCCACCGCCGCCATTCTTCGAAGCTCCTCAAGATCTCAATTCTTTGTATATTGAGCTTCAGTTCCCTTCCAAGAAGATCAGACCCATTTCAACCTGA

mRNA sequence

ATGGGTATGGAGCTTCTCGAAGAATTCCGCCCACTTACCCCTTTAAGATCATCATCACTTCAACTTCCCAAAGACAAAACCGATCAACATCATCTTCAACAACAACCAGAAGAAGAATGCCACACGCCCACCGCCGCCGCCAGCCGCCTCAAGCCGTCCATCCAGTGCCCGCCGGCGCCCAAGAAACCTCGCCCTCGTCGAAGAAAATTGAACTTTCCACCGCCGCCATTCTTCGAAGCTCCTCAAGATCTCAATTCTTTGTATATTGAGCTTCAGTTCCCTTCCAAGAAGATCAGACCCATTTCAACCTGA

Coding sequence (CDS)

ATGGGTATGGAGCTTCTCGAAGAATTCCGCCCACTTACCCCTTTAAGATCATCATCACTTCAACTTCCCAAAGACAAAACCGATCAACATCATCTTCAACAACAACCAGAAGAAGAATGCCACACGCCCACCGCCGCCGCCAGCCGCCTCAAGCCGTCCATCCAGTGCCCGCCGGCGCCCAAGAAACCTCGCCCTCGTCGAAGAAAATTGAACTTTCCACCGCCGCCATTCTTCGAAGCTCCTCAAGATCTCAATTCTTTGTATATTGAGCTTCAGTTCCCTTCCAAGAAGATCAGACCCATTTCAACCTGA

Protein sequence

MGMELLEEFRPLTPLRSSSLQLPKDKTDQHHLQQQPEEECHTPTAAASRLKPSIQCPPAPKKPRPRRRKLNFPPPPFFEAPQDLNSLYIELQFPSKKIRPIST
Homology
BLAST of Lag0033892 vs. NCBI nr
Match: KAG6589677.1 (hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MGMELLEEFRPLTPLRSSSLQLPKDKTDQHHLQQQPEEECHTPTAAASRLKPSIQCPPAP 60
           MGME+LEEFRPLTPLRS SLQLPK+K DQ+    Q +E+C TPTAAA+RLKP++ CPPAP
Sbjct: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKADQN---IQEQEDCQTPTAAATRLKPTMVCPPAP 60

Query: 61  KKPRPRRRKLNFPPPPFFEAPQDLNSLYIELQFPSKKIRPIST 104
           KKPRP RRKLNF PPPFFEAPQDL+S+YIELQ PSKKI+PI+T
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPITT 100

BLAST of Lag0033892 vs. NCBI nr
Match: KAG6587720.1 (hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-31
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 1   MGMELLEEFRPLTPLR-SSSLQLPKDKTDQHHLQQQPEEECHTPTAAASRLKPSIQCPPA 60
           MGME+++EFRPLTPLR + SLQ+PK++ D    Q+Q  EEC TPTAA SRLKP+++CPPA
Sbjct: 1   MGMEVMDEFRPLTPLRLTPSLQIPKERRD---FQEQQPEECQTPTAAGSRLKPTMECPPA 60

Query: 61  PKKPRPRRRKLNFPPPPFFEAPQDLNSLYIELQFPSKKIRPIST 104
           PKKPRP RRKLNF PP FF+APQDL S+Y ELQFPSKKI+PIST
Sbjct: 61  PKKPRPPRRKLNFQPPSFFDAPQDLKSVYFELQFPSKKIKPIST 101

BLAST of Lag0033892 vs. NCBI nr
Match: KGN65496.1 (hypothetical protein Csa_019987 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0

Query: 1   MGMELLEEFRPLTPLRSSSLQLPKDKTDQHHLQQQPEEECHTPTAAASRLKPSIQCPPAP 60
           MGME+L+EF PLTPL S    +PK KT+Q   Q+  EEEC TPTAAA+RLKP+I CPPAP
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQ-QEDQEEECLTPTAAAARLKPAIICPPAP 60

Query: 61  KKPRPRRRKLNFPPPPFFEAPQDLNSLYIELQFPSKKIRPI 102
           KKPRP RRKLNF PPPFFEAPQDLNS+Y +   PSKKI+PI
Sbjct: 61  KKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPI 100

BLAST of Lag0033892 vs. NCBI nr
Match: KAE8056731.1 (hypothetical protein FH972_013476 [Carpinus fangiana])

HSP 1 Score: 87.4 bits (215), Expect = 7.7e-14
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 1   MGMELLEEFRPLTPLRSSSLQLPKDKTDQHHLQ-QQPEE---------ECHTPTAAASRL 60
           MG+E+LEEFRP+TP+R+ S+     ++  H  +  +PEE         ECHTP ++   L
Sbjct: 1   MGLEILEEFRPVTPIRTISI----TRSSSHATELSEPEETKEVALDDVECHTPKSSVHTL 60

Query: 61  KPSIQCPPAPKKPRPRRRKLNFPPPPFFEAPQDLNS-LYIELQFPSKKIR 100
           K  + CPPAPKKPRP RRKL+ PP   F+ P DL S +++ L  PSKKIR
Sbjct: 61  KSPLVCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

BLAST of Lag0033892 vs. NCBI nr
Match: KAG6698666.1 (hypothetical protein I3842_08G031200 [Carya illinoinensis] >KAG7966043.1 hypothetical protein I3843_08G030900 [Carya illinoinensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 50/105 (47.62%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 1   MGMELLEEFRPLTPLRSSSL------QLPKDKTDQHHLQQQPEEECHTPTAAASRLKPSI 60
           MG E LEE RP+TP+R+ S+       +     D+   Q    EECHTP  +   LK  +
Sbjct: 1   MGFETLEEIRPVTPIRTISITRSFNHAMELSSPDERKYQLLYHEECHTPKISDQALKSPL 60

Query: 61  QCPPAPKKPRPRRRKLNFPPPPFFEAPQDLNSLYIELQFPSKKIR 100
            CPPAPKKPR  +RKL  PP  F E PQDL S+++ L  PSKKIR
Sbjct: 61  VCPPAPKKPRTAKRKLRPPPKRFLEVPQDLASVFMVLNKPSKKIR 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589677.13.9e-3476.70hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6587720.11.4e-3171.15hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65496.12.2e-2970.30hypothetical protein Csa_019987 [Cucumis sativus][more]
KAE8056731.17.7e-1447.27hypothetical protein FH972_013476 [Carpinus fangiana][more]
KAG6698666.11.0e-1347.62hypothetical protein I3842_08G031200 [Carya illinoinensis] >KAG7966043.1 hypothe... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availablePANTHERPTHR35162:SF2OS08G0516600 PROTEINcoord: 1..100
NoneNo IPR availablePANTHERPTHR35162OS08G0516600 PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033892.1Lag0033892.1mRNA