Lag0033858 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033858
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	myb-related transcription factor, partner of profilin-like
Location	chr3: 2385802 .. 2388758 (-)
RNA-Seq Expression	Lag0033858
Synteny	Lag0033858

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATCAATAGCGAATCTACGCCGCCTCCGTTGATCGGAAAAATTGGGCCCTACACTGTGTTCATGACCCCGCCGGCGACTCCTTCGCCGGCCTCTCCGCCCCAGCCGGTGTTCGAGTCCCCCAAGAAGATCATTCAGCCGCCTCCGGTTCAGCCTCCGCCTCAGCAGTTCGATAAGTCTGTTGCTGTTGCTGCTGTCCCTAATGGGAATGCTTCTGTCGCCGGATTCTTCAGAAATGCGGTCTCTAAAGTGCAGAATGGTAATACTTATGATGGGATGTTCTGTTATGGGAAATGGGTTTCTGCTTTGAGTTTGTTTGTTGCTTTATTTTGATTAATGTTGTGATATTTGGGGGCCGGGAGACGGAAATGGGACTGGGTTTTTTCTGTTTTTGCTGATTGTGGTTGAGAGAAACCTATCTACGGAAAATCTATCTAGGGAAATTGATGAGTTCGCTAATTATGGAATTCCATTATTTTCTTGTGTGTAGAAACAGGGGCTTCGGTATAGTTTTAGAATTTAGCCATATTGCTTGATGTGTAATCAGGCCAGGATTCTCATGGAATATTTATATTTTTCTTCTTGTTGTTGCCATTGTTGCCAAAAGGAGAGACACGTTAATGAATGTTTGTTTGTTCTTCTCCCAGAATTACCTTGTGAATTTCCTCTTCAATATCTTGGTCTTCTGTATTTGATACTTTAAAGTTGGTTTTCTTATAAAATTTGGTGGAGGAACTCTACTTGAGTTTGTGCTGAACGTATGCTCATTTGTTAGAAAGAGTTCTGTTATTGTTTTGGAAATTGGGGGAAAGAAGAGAACAAAAAACTAAAGAAAATTAGTGGTGAACCTTGGCTTCATATTCAAATATCTTCTGCTATGCAGTAATTTTTGTAAATAAGCATAAAGGTTTTGGTACTGTTTTGCAGCACATTCAAGCTTGGATGACCATTTGGCACGTTGGTTCGGGTTAAATCAATCCAAGTACCAGTGGGCATTAGATGATTATTATGAGAGCAAAGGAATGGTATGCATGTGGTCAAATTCATCAGTATTGCAATTACATATTTCTGTATATTGTTTTCTGAAATTTAGCGTTGTTATTTCCGCTAATTCTCGGACATTCTTCGTTAATCTTAAATAGATTGTCCATTTCACTTATCCTTTCTCATCCGTAGTCTATAATTCTGGCCTGTTCATAATTGAAATAATAATAATTATTGGTTGAAACTACATACATGGGGTAAGTTTGAAGCAATCTTGCACTACTTTTATATGAAGTAACTTTGAAGTCAAGTGTTTCTCTAACTTGTTCTATGTTTCCATTCATTATTTCATTTATTTTCATTAAATGCATAGGGTAACTAGTGGAACCTATCTGTTTTCCGCTCTTGGTTCGTTGAGAAAGAAAAGTAGAAAGAAGAGGCTAACTGTGTTTTTAATGCGTGACTGAAGTTATCCTGTATGCTTCTATAGAGTAAAGTGAAACAATAAGATGGACATTTCCTGCTTGCCTTCTGTAAATGCTATAATTTGGTGCATGAATGAGAACCATGCAATTAAACCCCAGACTAGTTGAGGTAGTTATCCTTCATGATTAAGTCTTCTCTTCAGTTATTTATATCTTTTCTAAATGTAGTTAATGGTTATAATGTCATCATTGGTATACCTGTAGGCTAGCTTATCCTTTCTCAATTTGCAACAACAGGAAGCTATAATTTCTTTACCTAAGATATTATTTAAATGAATGATTGCCAAAGAAAAGAAGATAATATATAAATGAATGGATTGTGATAACTCTTACCTTTACCACTTTAGTTTTCTTATGATTTGGTTCATCTTTTTGCAGTTTATTTTCGTTGGTTATGATTACATGTTTTACTTGTATCTTAGCTTTTATTCTGACTTCCCTGTTCTATAGTTAAGAAAATCTCCATGAACTTTCAAGCTTGTACTACACAATTCCAAATCTCAATAAACCATTTGCTGTATAGTTAGTCATGGGTCTGGATTTTCTTTAGTTGGACTGTTTTTGTTTGCCCTTTTGTATTCTTTCATTTTATCTCGACGAGTGCATCTTTTTTTATAAGAAAAAGAAAAGAAACTCATTAAACCATTATGTTCTCAACCCAAAATAACTTAACACACATTCGTACCCAACCTTAAACCTCTCTTAATTGAACTTCCAGCTTTTGGTAGTTAGGTAGAAAGGTTGACTCAATTTCAACTCTTGACACAAGACCAACTTCTGTCTGAAATTGTTGAAGCACCGTCTTAGAGTTTTGATGAACAATTGGTAGATTCACAATTGGAGTGAGATATAAGTACAAACTGAATAAGGATTCAAAATCCTACCAGCCTCTTTACAACCAAATCTGGTAGGGTTAGATGGTTGTTCATGAGCTTTGTTGAGGTGCGCACAAGTTGGGACATTTTGGATGTTAGATAAAAGAAAAGCAAAAGAAAATTAAAATCACAAACTTGAAATATTTTTTAATCTTGGAATCTCATTAAATTATATAAGCAGATTGGAAACCATGATGAAATTAACTAATTTTAATGGAAGTTTCAAAGATTTCCGTCAACGACCAATTCTAACAGACCTTTTTTTAAAAATAATTTTGTTTGTATGTCTGTTTGTTTTCTGTTTGTGTGTGTTTTTTTAAAATCAAAATTCAATACACAGTCTGTTAGTAATAAAATGAGGAGAAGTTTGATTTGATTAACTAGCAAAACAAGAGTGTTTGTCTTTAGTTCGATAGTTGAATCAGATTATGATCAATGTCGTCATAAATCCAAATGAAACGAGCATGTGTATTAATTCTATATCAAATTCAACTTTTTATGTCTGTATATATATGTGTATGAGACCTTGAATTTTAGCATCTTTCTCGTACTGCAGGAAAATGGTGACATGAAAGCAAAGGAACCGTCGAGCAAAGCCCAGAGCGTGTAA

mRNA sequence

ATGCCTATCAATAGCGAATCTACGCCGCCTCCGTTGATCGGAAAAATTGGGCCCTACACTGTGTTCATGACCCCGCCGGCGACTCCTTCGCCGGCCTCTCCGCCCCAGCCGGTGTTCGAGTCCCCCAAGAAGATCATTCAGCCGCCTCCGGTTCAGCCTCCGCCTCAGCAGTTCGATAAGTCTGTTGCTGTTGCTGCTGTCCCTAATGGGAATGCTTCTGTCGCCGGATTCTTCAGAAATGCGGTCTCTAAAGTGCAGAATGCACATTCAAGCTTGGATGACCATTTGGCACGTTGGTTCGGGTTAAATCAATCCAAGTACCAGTGGGCATTAGATGATTATTATGAGAGCAAAGGAATGGAAAATGGTGACATGAAAGCAAAGGAACCGTCGAGCAAAGCCCAGAGCGTGTAA

Coding sequence (CDS)

ATGCCTATCAATAGCGAATCTACGCCGCCTCCGTTGATCGGAAAAATTGGGCCCTACACTGTGTTCATGACCCCGCCGGCGACTCCTTCGCCGGCCTCTCCGCCCCAGCCGGTGTTCGAGTCCCCCAAGAAGATCATTCAGCCGCCTCCGGTTCAGCCTCCGCCTCAGCAGTTCGATAAGTCTGTTGCTGTTGCTGCTGTCCCTAATGGGAATGCTTCTGTCGCCGGATTCTTCAGAAATGCGGTCTCTAAAGTGCAGAATGCACATTCAAGCTTGGATGACCATTTGGCACGTTGGTTCGGGTTAAATCAATCCAAGTACCAGTGGGCATTAGATGATTATTATGAGAGCAAAGGAATGGAAAATGGTGACATGAAAGCAAAGGAACCGTCGAGCAAAGCCCAGAGCGTGTAA

Protein sequence

MPINSESTPPPLIGKIGPYTVFMTPPATPSPASPPQPVFESPKKIIQPPPVQPPPQQFDKSVAVAAVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGMENGDMKAKEPSSKAQSV

Homology

[Close]

BLAST of Lag0033858 vs. NCBI nr
Match: XP_023530480.1 (uncharacterized protein LOC111793029 [Cucurbita pepo subsp. pepo] >XP_023530481.1 uncharacterized protein LOC111793029 [Cucurbita pepo subsp. pepo] >XP_023530482.1 uncharacterized protein LOC111793029 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 6.8e-66
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASPPQPVFESPKKIIQPPPVQPPPQQFDK 60
           MPIN+ESTPPPLIGKIGPYTVFMTPP+TPSPASPPQPVFESPKK+IQPPPVQPPPQQFDK
Sbjct: 1   MPINTESTPPPLIGKIGPYTVFMTPPSTPSPASPPQPVFESPKKVIQPPPVQPPPQQFDK 60

Query: 61  SVAVAAVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120
           SV+VA V NGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM
Sbjct: 61  SVSVAGVGNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDMKAKEPSSKAQSV 138
           ENGDMKAKEPSSKAQSV
Sbjct: 121 ENGDMKAKEPSSKAQSV 137

[Close]

BLAST of Lag0033858 vs. NCBI nr
Match: XP_038878417.1 (uncharacterized protein LOC120070657 [Benincasa hispida] >XP_038878418.1 uncharacterized protein LOC120070657 [Benincasa hispida])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASPPQPVFESPKKIIQPPPVQPPPQQFDK 60
           MPINSESTPPPLIGKIGPYTVFMTPPATPSPAS PQPVFESPKK+IQPPPVQPPP QFDK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPQPVFESPKKVIQPPPVQPPPHQFDK 60

Query: 61  SVAVAAVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120
           SV+VAA PNGNASV+GFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM
Sbjct: 61  SVSVAASPNGNASVSGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDMKAKEPSSKAQSV 138
           ENGDMKAKEPSSKAQSV
Sbjct: 121 ENGDMKAKEPSSKAQSV 137

[Close]

BLAST of Lag0033858 vs. NCBI nr
Match: XP_022930193.1 (myb-related transcription factor, partner of profilin-like [Cucurbita moschata] >XP_022930194.1 myb-related transcription factor, partner of profilin-like [Cucurbita moschata] >XP_022930196.1 myb-related transcription factor, partner of profilin-like [Cucurbita moschata] >XP_023007095.1 myb-related transcription factor, partner of profilin-like [Cucurbita maxima] >XP_023007098.1 myb-related transcription factor, partner of profilin-like [Cucurbita maxima] >XP_023007106.1 myb-related transcription factor, partner of profilin-like [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASPPQPVFESPKKIIQPPPVQPPPQQFDK 60
           MPIN+ESTPPPLIGKIGPYTVFMTPP+TPSPASPPQPVFESPKK+IQPPPVQPPPQQFDK
Sbjct: 1   MPINTESTPPPLIGKIGPYTVFMTPPSTPSPASPPQPVFESPKKVIQPPPVQPPPQQFDK 60

Query: 61  SVAVAAVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120
           SV+V  V NGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM
Sbjct: 61  SVSVDTVANGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDMKAKEPSSKAQSV 138
           ENGDMKAKEPSSKAQSV
Sbjct: 121 ENGDMKAKEPSSKAQSV 137

[Close]

BLAST of Lag0033858 vs. NCBI nr
Match: KAG6587745.1 (hypothetical protein SDJN03_16310, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.2 bits (648), Expect = 6.3e-64
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASPPQPVFESPKKIIQPPPVQPPPQQFDK 60
           MPIN+ESTPPPLIGKIGPYTVFMTPP+TPS ASPPQPVFESPKK+IQPPPVQPPPQQFDK
Sbjct: 1   MPINTESTPPPLIGKIGPYTVFMTPPSTPSTASPPQPVFESPKKVIQPPPVQPPPQQFDK 60

Query: 61  SVAVAAVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120
           SV+V    NGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM
Sbjct: 61  SVSVDTAANGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDMKAKEPSSKAQSV 138
           ENGDMKAKEPSSKAQSV
Sbjct: 121 ENGDMKAKEPSSKAQSV 137

[Close]

BLAST of Lag0033858 vs. NCBI nr
Match: XP_008453592.1 (PREDICTED: uncharacterized protein LOC103494256 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 1.4e-63
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASPPQPVFESPKKIIQPPPVQPPPQQFDK 60
           MPINSESTPPPLIGKIGPYTVFMTPP TPSP S PQPVFESPKK+IQPPPVQPPP QFDK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPPTPSPTSQPQPVFESPKKVIQPPPVQPPPHQFDK 60

Query: 61  SVAVAAVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120
           SV++AAVPNGNASV+GFFRNAVSKVQNAHS LDDHLARWFGLNQSKYQWALDDYYESKGM
Sbjct: 61  SVSLAAVPNGNASVSGFFRNAVSKVQNAHSRLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDMKAKEPSSKAQSV 138
           E GDMKAKEPSSKAQSV
Sbjct: 121 ETGDMKAKEPSSKAQSV 137

The following BLAST results are available for this feature:

BLAST of Lag0033858 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530480.1	6.8e-66	95.62	uncharacterized protein LOC111793029 [Cucurbita pepo subsp. pepo] >XP_023530481....	[more]
XP_038878417.1	1.5e-65	95.62	uncharacterized protein LOC120070657 [Benincasa hispida] >XP_038878418.1 unchara...	[more]
XP_022930193.1	2.6e-65	94.89	myb-related transcription factor, partner of profilin-like [Cucurbita moschata] ...	[more]
KAG6587745.1	6.3e-64	93.43	hypothetical protein SDJN03_16310, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008453592.1	1.4e-63	92.70	PREDICTED: uncharacterized protein LOC103494256 [Cucumis melo]	[more]

BLAST of Lag0033858 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..57
None	No IPR available	PANTHER	PTHR37376:SF6	BNACNNG30510D PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR37376	EXPRESSED PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033858.1	Lag0033858.1	mRNA