Lag0033851 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033851
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Oxysterol-binding protein-related protein 4B-like
Location	chr3: 2311712 .. 2312230 (+)
RNA-Seq Expression	Lag0033851
Synteny	Lag0033851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGGAGAAAGATGGTGATTTTGTGTTACGTTTCGAAAGTTTTCCTTCGAGAACTTCCTCTATGAGTTGTTCGTCTCGTTTGTACTATAGGACCACTGAAGGAGTTCCGTTTCAGTGGGAGATGCAACCGGGGACTCCCAAGGATCCGTCGTTAATAGAGGCGGTTCCGCCGCCAATCAGCCCGCCGCCGGCCGTGCTCAACCTTGGCTTGCCAAAGCCAACAAAAGGTCAGAATAAACTATGGTTGTTTGTGTTTGGGTCATGGAAGAGGATGTCCAAGTCCAAGAAGCATTCTTGTAATTCAGATGAATTTGATGACGGTCGACATTCGAGATTTGAGTCATGTGGGTCTCACTGTGAGCTTATGGAGTCACCATGCCAACCAAAATCTTCTTCTTCTTCTTTGTCGTTGCCGACATCTTTGTTACCGGCGGAATCTTCTCGTCGCCGGCGGTTGGGATGTGGTCCATGGAGGATCAATCCTATTAAAATTGCTATTGGAAGGCGAGTTTGA

mRNA sequence

ATGAAGGAGGAGAAAGATGGTGATTTTGTGTTACGTTTCGAAAGTTTTCCTTCGAGAACTTCCTCTATGAGTTGTTCGTCTCGTTTGTACTATAGGACCACTGAAGGAGTTCCGTTTCAGTGGGAGATGCAACCGGGGACTCCCAAGGATCCGTCGTTAATAGAGGCGGTTCCGCCGCCAATCAGCCCGCCGCCGGCCGTGCTCAACCTTGGCTTGCCAAAGCCAACAAAAGGTCAGAATAAACTATGGTTGTTTGTGTTTGGGTCATGGAAGAGGATGTCCAAGTCCAAGAAGCATTCTTGTAATTCAGATGAATTTGATGACGGTCGACATTCGAGATTTGAGTCATGTGGGTCTCACTGTGAGCTTATGGAGTCACCATGCCAACCAAAATCTTCTTCTTCTTCTTTGTCGTTGCCGACATCTTTGTTACCGGCGGAATCTTCTCGTCGCCGGCGGTTGGGATGTGGTCCATGGAGGATCAATCCTATTAAAATTGCTATTGGAAGGCGAGTTTGA

Coding sequence (CDS)

ATGAAGGAGGAGAAAGATGGTGATTTTGTGTTACGTTTCGAAAGTTTTCCTTCGAGAACTTCCTCTATGAGTTGTTCGTCTCGTTTGTACTATAGGACCACTGAAGGAGTTCCGTTTCAGTGGGAGATGCAACCGGGGACTCCCAAGGATCCGTCGTTAATAGAGGCGGTTCCGCCGCCAATCAGCCCGCCGCCGGCCGTGCTCAACCTTGGCTTGCCAAAGCCAACAAAAGGTCAGAATAAACTATGGTTGTTTGTGTTTGGGTCATGGAAGAGGATGTCCAAGTCCAAGAAGCATTCTTGTAATTCAGATGAATTTGATGACGGTCGACATTCGAGATTTGAGTCATGTGGGTCTCACTGTGAGCTTATGGAGTCACCATGCCAACCAAAATCTTCTTCTTCTTCTTTGTCGTTGCCGACATCTTTGTTACCGGCGGAATCTTCTCGTCGCCGGCGGTTGGGATGTGGTCCATGGAGGATCAATCCTATTAAAATTGCTATTGGAAGGCGAGTTTGA

Protein sequence

MKEEKDGDFVLRFESFPSRTSSMSCSSRLYYRTTEGVPFQWEMQPGTPKDPSLIEAVPPPISPPPAVLNLGLPKPTKGQNKLWLFVFGSWKRMSKSKKHSCNSDEFDDGRHSRFESCGSHCELMESPCQPKSSSSSLSLPTSLLPAESSRRRRLGCGPWRINPIKIAIGRRV

Homology

[Close]

BLAST of Lag0033851 vs. NCBI nr
Match: KAG6587751.1 (hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-52
Identity = 118/176 (67.05%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 1   MKEEK-DGDFVLRFESFPSRTSSMSCSSRLYY--RTTEGVPFQWEMQPGTPKDPSLIEAV 60
           MK+EK DG+FVL  ++ PSR SS+ CSSRLYY  RTTEGVPFQWEMQPGTPKDP   EAV
Sbjct: 1   MKDEKDDGEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDPPYTEAV 60

Query: 61  PPPISPPPAVLNLGLPKPTKGQNKLWLF-VFGSWKRMSKSKKHSCNSDEFDDGRHSRFES 120
              I+PPPA L+L  PKP + Q K  LF +F  W++ SKS+KHSC SDEF+DGR +RF S
Sbjct: 61  TLLITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSQKHSCLSDEFEDGR-TRFGS 120

Query: 121 CGSHCELMESPCQPKSSSSSLSLPTSLLPAESSRRRRLGCGPWRINPIKIAIGRRV 173
           CGS CE ++S C+PKSSSSS S  +SL PAESS  RRLGCGPWRINP++IAIGRRV
Sbjct: 121 CGSQCEFIQSLCEPKSSSSSSSW-SSLPPAESSAHRRLGCGPWRINPLRIAIGRRV 174

[Close]

BLAST of Lag0033851 vs. NCBI nr
Match: XP_023530969.1 (uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 5.3e-52
Identity = 119/176 (67.61%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MKEEK-DGDFVLRFESFPSRTSSMSCSSRLYY--RTTEGVPFQWEMQPGTPKDPSLIEAV 60
           MK+EK D +FVL  ++ PSR SS+ CSSRLYY  RTTEGVPFQWEMQPGTPKD    EAV
Sbjct: 1   MKDEKDDAEFVLPLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDQPYTEAV 60

Query: 61  PPPISPPPAVLNLGLPKPTKGQNKLWLF-VFGSWKRMSKSKKHSCNSDEFDDGRHSRFES 120
              I+PPPA L+L  PKP + Q K  LF +F  W++ SKSKKHSC SDEF+DGR SRF S
Sbjct: 61  TLLITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGR-SRFGS 120

Query: 121 CGSHCELMESPCQPKSSSSSLSLPTSLLPAESSRRRRLGCGPWRINPIKIAIGRRV 173
           CGS CE ++SPCQPKSSSSS S  +SL  AESS  RRLGCGPWRINP++IAIGRRV
Sbjct: 121 CGSQCEFIQSPCQPKSSSSSSSW-SSLPAAESSAHRRLGCGPWRINPLRIAIGRRV 174

[Close]

BLAST of Lag0033851 vs. NCBI nr
Match: KAG7021722.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.5 bits (545), Expect = 7.0e-52
Identity = 117/175 (66.86%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MKEEK-DGDFVLRFESFPSRTSSMSCSSRLYY--RTTEGVPFQWEMQPGTPKDPSLIEAV 60
           MK+EK DG+FVL  ++ PSR SS+ CSSRLYY  RTTEGVPFQWEMQPGTPKDP   EAV
Sbjct: 1   MKDEKDDGEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDPPYTEAV 60

Query: 61  PPPISPPPAVLNLGLPKPTKGQNKLWLF-VFGSWKRMSKSKKHSCNSDEFDDGRHSRFES 120
              I+PPPA L+L  PKP + Q K  LF +F  W++ SKS+KHSC SDEF+DGR +RF S
Sbjct: 61  TLLITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSQKHSCLSDEFEDGR-TRFGS 120

Query: 121 CGSHCELMESPCQPKSSSSSLSLPTSLLPAESSRRRRLGCGPWRINPIKIAIGRR 172
           CGS CE ++S C+PKSSSSS S  +SL PAESS  RRLGCGPWRINP++IAIGRR
Sbjct: 121 CGSQCEFIQSLCEPKSSSSSSSW-SSLPPAESSAHRRLGCGPWRINPLRIAIGRR 173

[Close]

BLAST of Lag0033851 vs. NCBI nr
Match: XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima])

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-51
Identity = 116/176 (65.91%), Postives = 135/176 (76.70%), Query Frame = 0


Query: 1   MKEEK-DGDFVLRFESFPSRTSSMSCSSRLYY--RTTEGVPFQWEMQPGTPKDPSLIEAV 60
           MK+EK D +FVL  ++ PSR SS+ CSSRLYY  RTTEGVPFQWEMQPGTPKDP   EAV
Sbjct: 1   MKDEKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDPPYTEAV 60

Query: 61  PPPISPPPAVLNLGLPKPTKGQNKLWLF-VFGSWKRMSKSKKHSCNSDEFDDGRHSRFES 120
              I+PPPA L+L  PKP +   K  LF +F  W++ SKSKKHSC SDEF+DGR +RF S
Sbjct: 61  TLLITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGR-TRFGS 120

Query: 121 CGSHCELMESPCQPKSSSSSLSLPTSLLPAESSRRRRLGCGPWRINPIKIAIGRRV 173
           CGS CE ++SPC+PKSSSSS    +SL  AESS  RRLGCGPWRINP++IAIGRRV
Sbjct: 121 CGSQCEFIQSPCEPKSSSSSAW--SSLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173

[Close]

BLAST of Lag0033851 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 115/176 (65.34%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MKEEK-DGDFVLRFESFPSRTSSMSCSSRLYY--RTTEGVPFQWEMQPGTPKDPSLIEAV 60
           MK+EK D +FVL  ++ PSR SS+ CSSRLYY  RTTEGVPFQWEMQPGTPKDP   EAV
Sbjct: 1   MKDEKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDPPYTEAV 60

Query: 61  PPPISPPPAVLNLGLPKPTKGQNKLWLF-VFGSWKRMSKSKKHSCNSDEFDDGRHSRFES 120
              I+PPPA L+L  PKP +   K  LF +F  W++ SKS+KHSC SDEF DGR +RF S
Sbjct: 61  TLLITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSQKHSCLSDEFGDGR-TRFGS 120

Query: 121 CGSHCELMESPCQPKSSSSSLSLPTSLLPAESSRRRRLGCGPWRINPIKIAIGRRV 173
           CGS CE ++SPC+PKSSSSS    +SL  AESS  RRLGCGPWRINP++IAIGRRV
Sbjct: 121 CGSQCEFIQSPCEPKSSSSSSW--SSLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173

The following BLAST results are available for this feature:

BLAST of Lag0033851 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587751.1	2.4e-52	67.05	hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530969.1	5.3e-52	67.61	uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo]	[more]
KAG7021722.1	7.0e-52	66.86	Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_023007086.1	3.5e-51	65.91	uncharacterized protein LOC111499680 [Cucurbita maxima]	[more]
XP_022930189.1	2.9e-50	65.34	uncharacterized protein LOC111436686 [Cucurbita moschata]	[more]

BLAST of Lag0033851 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 12..162
None	No IPR available	PANTHER	PTHR33257:SF6	OXYSTEROL-BINDING 4B-LIKE PROTEIN-RELATED	coord: 12..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033851.1	Lag0033851.1	mRNA