Lag0033819 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033819
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 2086446 .. 2086847 (+)
RNA-Seq ExpressionLag0033819
SyntenyLag0033819
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAAAACGAGCGGCTCATCCCTATGGGATTATGGAATTGGAAGTTCCTTTGAGTTGCAACAAATCCAAGTCCAAGTCCAAGCCCAACACCAAAAGAACATCTACCAAACAACTTGGAGTGGAGAAGACAACGACCACAGTCTACAAAGACAAGCTTCCTGGAGGATCAAGTGTACAGTTTTCCAAGAGGCATAAGGTCAAGGAATTTCTGGACAACAACACTGGACGCTTCAGTTCCAAAGAAGAGGTTACCTATAAGTCTACTTTCAAAGTTGATGATGGACTTCAAGGGTTTCTCAATGAGGTTCAAACTCAAGTGAAGTTTAAGAAAGCTCCAACCTCTACCAAGAATAATACCACTAAATGCACCAATAAGCACATCATGTTTGACTTCTAG

mRNA sequence

ATGGGAGGAAAACGAGCGGCTCATCCCTATGGGATTATGGAATTGGAAGTTCCTTTGAGTTGCAACAAATCCAAGTCCAAGTCCAAGCCCAACACCAAAAGAACATCTACCAAACAACTTGGAGTGGAGAAGACAACGACCACAGTCTACAAAGACAAGCTTCCTGGAGGATCAAGTGTACAGTTTTCCAAGAGGCATAAGGTCAAGGAATTTCTGGACAACAACACTGGACGCTTCAGTTCCAAAGAAGAGGTTACCTATAAGTCTACTTTCAAAGTTGATGATGGACTTCAAGGGTTTCTCAATGAGGTTCAAACTCAAGTGAAGTTTAAGAAAGCTCCAACCTCTACCAAGAATAATACCACTAAATGCACCAATAAGCACATCATGTTTGACTTCTAG

Coding sequence (CDS)

ATGGGAGGAAAACGAGCGGCTCATCCCTATGGGATTATGGAATTGGAAGTTCCTTTGAGTTGCAACAAATCCAAGTCCAAGTCCAAGCCCAACACCAAAAGAACATCTACCAAACAACTTGGAGTGGAGAAGACAACGACCACAGTCTACAAAGACAAGCTTCCTGGAGGATCAAGTGTACAGTTTTCCAAGAGGCATAAGGTCAAGGAATTTCTGGACAACAACACTGGACGCTTCAGTTCCAAAGAAGAGGTTACCTATAAGTCTACTTTCAAAGTTGATGATGGACTTCAAGGGTTTCTCAATGAGGTTCAAACTCAAGTGAAGTTTAAGAAAGCTCCAACCTCTACCAAGAATAATACCACTAAATGCACCAATAAGCACATCATGTTTGACTTCTAG

Protein sequence

MGGKRAAHPYGIMELEVPLSCNKSKSKSKPNTKRTSTKQLGVEKTTTTVYKDKLPGGSSVQFSKRHKVKEFLDNNTGRFSSKEEVTYKSTFKVDDGLQGFLNEVQTQVKFKKAPTSTKNNTTKCTNKHIMFDF
Homology
BLAST of Lag0033819 vs. NCBI nr
Match: KAG6587772.1 (hypothetical protein SDJN03_16337, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.6 bits (475), Expect = 7.1e-44
Identity = 98/133 (73.68%), Postives = 112/133 (84.21%), Query Frame = 0

Query: 1   MGGKRAAHPYGIMELEVPLSCNKSKSKSKPNTKRTSTKQLGVEKTTTTVYKDKLPGGSSV 60
           MGGKRA H Y + ELEVPLSCNK K  +KP  KR ST + G EKTTTTVYK++LPGG +V
Sbjct: 113 MGGKRAVHYYEMTELEVPLSCNKPK-LAKPGAKRASTNRRGAEKTTTTVYKNELPGGLTV 172

Query: 61  QFSKRHKVKEFLDNNTGRFSSKEEVTYKSTFKVDDGLQGFLNEVQTQVKFKKAPTSTKNN 120
           Q SKRHKVKEF+DNN+GR SSKEEVTYKS+FKVD+ +QG  NEVQTQVKFKKAP+S+ NN
Sbjct: 173 QVSKRHKVKEFVDNNSGRLSSKEEVTYKSSFKVDNAVQGIFNEVQTQVKFKKAPSSS-NN 232

Query: 121 TTKCTNKHIMFDF 134
           +TK TNKHIMFDF
Sbjct: 233 STKPTNKHIMFDF 243

BLAST of Lag0033819 vs. NCBI nr
Match: KAA0058314.1 (hypothetical protein E6C27_scaffold274G006480 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-32
Identity = 86/135 (63.70%), Postives = 100/135 (74.07%), Query Frame = 0

Query: 1   MGGKRAAHPYGIMELEVPLSCNKSKSKSKPNTKRTSTKQLGVEKTTTTVYKDKLPGGSSV 60
           MGGKRA H    ++L VPL C+K         K+ ST Q G+EKT TTV K ++ GGSSV
Sbjct: 1   MGGKRAIHT--SLKLPVPLGCSK--------PKKHSTNQRGMEKTITTVNKYEVVGGSSV 60

Query: 61  QFSKRHKVKEFLDNNTGRFSSKEEVTYKSTFKVDDGLQGFLNEVQTQVKFKKA-PTSTKN 120
           +FSKR KVKEF+D NTGR SSKEEVTYK + KVDDG  GF++EVQTQVKFKK  PTS KN
Sbjct: 61  EFSKRQKVKEFVDKNTGRLSSKEEVTYKCSMKVDDGAHGFVDEVQTQVKFKKVIPTSAKN 120

Query: 121 NTT-KCTNKHIMFDF 134
           N++ K TNKHIMFDF
Sbjct: 121 NSSMKATNKHIMFDF 125

BLAST of Lag0033819 vs. NCBI nr
Match: TYK09494.1 (hypothetical protein E5676_scaffold499G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 85/135 (62.96%), Postives = 99/135 (73.33%), Query Frame = 0

Query: 1   MGGKRAAHPYGIMELEVPLSCNKSKSKSKPNTKRTSTKQLGVEKTTTTVYKDKLPGGSSV 60
           MGGKRA H    ++L VPL C+K         K+ ST Q G+EKT TTV K ++ GGSSV
Sbjct: 1   MGGKRAIHT--SLKLPVPLGCSK--------PKKHSTNQRGMEKTITTVNKYEVVGGSSV 60

Query: 61  QFSKRHKVKEFLDNNTGRFSSKEEVTYKSTFKVDDGLQGFLNEVQTQVKFKKA-PTSTKN 120
           +FSKR KVKEF+D NTGR SSKEEVTYK + KVDDG  GF++EVQTQVKFKK  PTS KN
Sbjct: 61  EFSKRQKVKEFVDKNTGRLSSKEEVTYKCSMKVDDGAHGFVDEVQTQVKFKKVIPTSAKN 120

Query: 121 NTT-KCTNKHIMFDF 134
           N++ K TNKHIM DF
Sbjct: 121 NSSMKATNKHIMLDF 125

BLAST of Lag0033819 vs. NCBI nr
Match: XP_030956139.1 (uncharacterized protein LOC115978256 [Quercus lobata] >XP_030956140.1 uncharacterized protein LOC115978256 [Quercus lobata])

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 31  NTKRTSTKQLGVEKTTTTVYKDKLPGGSSVQFSKRHKVKEFLDNNTGRFSSKEEVTYKST 90
           + KR   +   +EK++ T+YKDK     S QF+K HK +EF+D ++GR   KE+VTYKST
Sbjct: 21  SNKRKMNESSELEKSSRTIYKDK-HSAYSEQFTKHHKAEEFVDKDSGRLGFKEQVTYKST 80

Query: 91  FKVDDGLQGFLNEVQTQVKFKKAPTSTKNNTTKCT-NKHIMFD 133
            KV+D +QG   E +TQVKFKK     K + +KC  N  I +D
Sbjct: 81  HKVNDKVQGSTTEYETQVKFKKT-VYPKKSASKCNYNNAIYYD 121

BLAST of Lag0033819 vs. NCBI nr
Match: KAF3944350.1 (hypothetical protein CMV_029177 [Castanea mollissima])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 31  NTKRTSTKQLGVEKTTTTVYKDKLPGGSSVQFSKRHKVKEFLDNNTGRFSSKEEVTYKST 90
           + KR   +   +EK++  +YKDK  G  S QF+K HK +EF+D ++GR   KE+VTYKST
Sbjct: 21  SNKRKVNESSDLEKSSRIIYKDK-HGAYSEQFTKHHKAEEFVDKHSGRLGFKEQVTYKST 80

Query: 91  FKVDDGLQGFLNEVQTQVKFKKAPTSTKN-NTTKCT-NKHIMFD 133
            KV+D +QG   E +TQVKFKK     K+ + +KC  N  I +D
Sbjct: 81  HKVNDKVQGSTTEYETQVKFKKTVYPNKSASKSKCNYNNAIYYD 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6587772.17.1e-4473.68hypothetical protein SDJN03_16337, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0058314.12.1e-3263.70hypothetical protein E6C27_scaffold274G006480 [Cucumis melo var. makuwa][more]
TYK09494.11.1e-3162.96hypothetical protein E5676_scaffold499G00950 [Cucumis melo var. makuwa][more]
XP_030956139.12.7e-1145.63uncharacterized protein LOC115978256 [Quercus lobata] >XP_030956140.1 uncharacte... [more]
KAF3944350.14.6e-1145.19hypothetical protein CMV_029177 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033819.1Lag0033819.1mRNA