Lag0033790 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033790
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ATP-dependent RNA helicase
Location	chr3: 1853615 .. 1854383 (+)
RNA-Seq Expression	Lag0033790
Synteny	Lag0033790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAAAAATGGTGGCTGTTGCTGGGAGTGGCGGGGTTTTAAAGAAGAGAATCATCAAGAGGAACAAGAAGAAAACCATTCACAAAGTGATCGATTATCTCTTATCCGATTGCTACTTATATGCTCCTCTTATTGCTTCTTCTTCTTCTTCTTCCTCACCGTTTAATCCTAATCGCTCACCCAGAAAAGGTTCTTCCACTTTTCTTCTCCAAAATTATTCATACTTTTTTTTTATCGATCTTCTTTAAATTGTTCTTTCTTGGCTTCATTCTTCTCAGGGATCGAAATCAGAGAACGCCCAAAAGATAAGCGGAGTTTGCTGAAGAAGATTGAGGATTATTTGAAATCTGATTGCTACATGTATGCTCCTCTCGTTGCACCCCAATCCTTCAGAGGTACTTTCTTCTAATTTATAGACTTGGAATTCTGATTCATTGGAAATTTTAATTTGACAAGTGCCCCGGAAAACAGGGTGTGTCGGGCATGTGAAGAAGGTAACTACGGAAGTTTTGAATGAATCGGCTGCGAATATGACGATGGAGAAGAGAATTTGCACAACTGATTTAGTTGATCAAGAAAATCTGACAAGCAAGGAATCATCGAAGCGCCGCGTGTATTCAAATTGTGGATCGATTGAAGGTTGAGTATTCAATAATTCAGATTTGGGAAATTTATGGTGATCGTGAATTTGATGGTTTATATTTGTGGGTGTGTATAGGAGAAGGAAGGCGTGAGGCAAAGATGAGGAAGATTGTGGTTGATTGA

mRNA sequence

ATGGCGAAAAAAATGGTGGCTGTTGCTGGGAGTGGCGGGGTTTTAAAGAAGAGAATCATCAAGAGGAACAAGAAGAAAACCATTCACAAAGTGATCGATTATCTCTTATCCGATTGCTACTTATATGCTCCTCTTATTGCTTCTTCTTCTTCTTCTTCCTCACCGTTTAATCCTAATCGCTCACCCAGAAAAGGGATCGAAATCAGAGAACGCCCAAAAGATAAGCGGAGTTTGCTGAAGAAGATTGAGGATTATTTGAAATCTGATTGCTACATGTATGCTCCTCTCGTTGCACCCCAATCCTTCAGAGGGTGTGTCGGGCATGTGAAGAAGGTAACTACGGAAGTTTTGAATGAATCGGCTGCGAATATGACGATGGAGAAGAGAATTTGCACAACTGATTTAGTTGATCAAGAAAATCTGACAAGCAAGGAATCATCGAAGCGCCGCGTGTATTCAAATTGTGGATCGATTGAAGGAGAAGGAAGGCGTGAGGCAAAGATGAGGAAGATTGTGGTTGATTGA

Coding sequence (CDS)

ATGGCGAAAAAAATGGTGGCTGTTGCTGGGAGTGGCGGGGTTTTAAAGAAGAGAATCATCAAGAGGAACAAGAAGAAAACCATTCACAAAGTGATCGATTATCTCTTATCCGATTGCTACTTATATGCTCCTCTTATTGCTTCTTCTTCTTCTTCTTCCTCACCGTTTAATCCTAATCGCTCACCCAGAAAAGGGATCGAAATCAGAGAACGCCCAAAAGATAAGCGGAGTTTGCTGAAGAAGATTGAGGATTATTTGAAATCTGATTGCTACATGTATGCTCCTCTCGTTGCACCCCAATCCTTCAGAGGGTGTGTCGGGCATGTGAAGAAGGTAACTACGGAAGTTTTGAATGAATCGGCTGCGAATATGACGATGGAGAAGAGAATTTGCACAACTGATTTAGTTGATCAAGAAAATCTGACAAGCAAGGAATCATCGAAGCGCCGCGTGTATTCAAATTGTGGATCGATTGAAGGAGAAGGAAGGCGTGAGGCAAAGATGAGGAAGATTGTGGTTGATTGA

Protein sequence

MAKKMVAVAGSGGVLKKRIIKRNKKKTIHKVIDYLLSDCYLYAPLIASSSSSSSPFNPNRSPRKGIEIRERPKDKRSLLKKIEDYLKSDCYMYAPLVAPQSFRGCVGHVKKVTTEVLNESAANMTMEKRICTTDLVDQENLTSKESSKRRVYSNCGSIEGEGRREAKMRKIVVD

Homology

[Close]

BLAST of Lag0033790 vs. NCBI nr
Match: XP_022933890.1 (uncharacterized protein LOC111441170 isoform X1 [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-39
Identity = 104/171 (60.82%), Postives = 119/171 (69.59%), Query Frame = 0


Query: 1   MAKKMVAVAGSGGVLKKRIIK-RNKKKTIHKVIDYLLSDCYLYAPLIASSSSSSSPFNPN 60
           MAK+MV V   GG +KKR++K R KKK IHKVIDYLLSDCYL+APLI     S SPFN  
Sbjct: 1   MAKEMVHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLI-----SPSPFNSY 60

Query: 61  RSPRKG------IEIRERPKDKRSLLKKIEDYLKSDCYMYAPLVAPQSFRGCVGHVKKVT 120
           R+PRKG      IEIRERPKD RS LKK+ DYLKSDCYMYA LVAPQSF+G  G+VK+V 
Sbjct: 61  RAPRKGSSFISDIEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVV 120

Query: 121 T-------------EVLNESAANMTMEKRICTTDL------VDQENLTSKE 146
           T             EV++ESAANMT E+RIC+TDL      +DQ N T KE
Sbjct: 121 TTEVSARRLILRGDEVMSESAANMTKERRICSTDLMEAEVVMDQPNATRKE 166

[Close]

BLAST of Lag0033790 vs. NCBI nr
Match: XP_022968868.1 (uncharacterized protein LOC111468025 [Cucurbita maxima])

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-39
Identity = 104/171 (60.82%), Postives = 120/171 (70.18%), Query Frame = 0


Query: 1   MAKKMVAVAGSGGVLKKRIIK-RNKKKTIHKVIDYLLSDCYLYAPLIASSSSSSSPFNPN 60
           MAK+M+ V   GG +KKR++K R KKK IHKVIDYLLSDC L+APLI     S SPFN  
Sbjct: 1   MAKEMLHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCNLFAPLI-----SPSPFNSY 60

Query: 61  RSPRKG------IEIRERPKDKRSLLKKIEDYLKSDCYMYAPLVAPQSFRGCVGHVKKVT 120
           R+PRKG      IEIRERPKD RS LKK+ DYLKSDCYMYA LVAPQSFRG  G+VK+V 
Sbjct: 61  RAPRKGSSFISDIEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFRGRAGYVKRVV 120

Query: 121 T-------------EVLNESAANMTMEKRICTTDL------VDQENLTSKE 146
           T             EV++ESAANMT E+RIC+TDL      VDQ+N T+KE
Sbjct: 121 TTEVSARRLILRGDEVMSESAANMTKERRICSTDLMEAEVVVDQQNATTKE 166

[Close]

BLAST of Lag0033790 vs. NCBI nr
Match: KAG6587786.1 (hypothetical protein SDJN03_16351, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-39
Identity = 103/171 (60.23%), Postives = 119/171 (69.59%), Query Frame = 0


Query: 1   MAKKMVAVAGSGGVLKKRIIK-RNKKKTIHKVIDYLLSDCYLYAPLIASSSSSSSPFNPN 60
           MAK+M+ V   GG +KKR++K R KKK IHKVIDYLLSDCYL+APLI     S SPFN  
Sbjct: 1   MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLI-----SPSPFNSY 60

Query: 61  RSPRKG------IEIRERPKDKRSLLKKIEDYLKSDCYMYAPLVAPQSFRGCVGHVKKVT 120
           R+PRKG      IEIRERPKD RS LKK+ DYLKSDCYMYA LVAPQSF+G  G+VK+V 
Sbjct: 61  RAPRKGSSFISDIEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVV 120

Query: 121 T-------------EVLNESAANMTMEKRICTTDL------VDQENLTSKE 146
           T             EV++ESAANMT E+RIC+TDL      +DQ N T KE
Sbjct: 121 TTEVSARRLILRGDEVMSESAANMTKERRICSTDLMEAEVVMDQPNATRKE 166

[Close]

BLAST of Lag0033790 vs. NCBI nr
Match: KAG7035711.1 (hypothetical protein SDJN02_02509, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 102/171 (59.65%), Postives = 118/171 (69.01%), Query Frame = 0


Query: 1   MAKKMVAVAGSGGVLKKRIIK-RNKKKTIHKVIDYLLSDCYLYAPLIASSSSSSSPFNPN 60
           MAK+M+ V   GG +KKR++K R KKK IHKVIDYLLSDCYL+APLI     S SPFN  
Sbjct: 1   MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLI-----SPSPFNSY 60

Query: 61  RSPRKG------IEIRERPKDKRSLLKKIEDYLKSDCYMYAPLVAPQSFRGCVGHVKKVT 120
           R+PRKG      IEIRERPKD RS LKK+ DYLKSDCYMYA LVAPQSF+G  G+VK+V 
Sbjct: 61  RAPRKGSSFISDIEIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVV 120

Query: 121 T-------------EVLNESAANMTMEKRICTTDL------VDQENLTSKE 146
           T             EV++ESA NMT E+RIC+TDL      +DQ N T KE
Sbjct: 121 TTEVSARRLILRGDEVMSESAVNMTKERRICSTDLMEAEVVMDQPNATRKE 166

[Close]

BLAST of Lag0033790 vs. NCBI nr
Match: XP_023532011.1 (uncharacterized protein LOC111794104 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 102/171 (59.65%), Postives = 118/171 (69.01%), Query Frame = 0


Query: 1   MAKKMVAVAGSGGVLKKRIIK-RNKKKTIHKVIDYLLSDCYLYAPLIASSSSSSSPFNPN 60
           MAK+M+ V   GG +KKR++K R KKK IHKVIDYLLSDCYL+APLI     S SPFN  
Sbjct: 1   MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLI-----SPSPFNSY 60

Query: 61  RSPRKG------IEIRERPKDKRSLLKKIEDYLKSDCYMYAPLVAPQSFRGCVGHVKKVT 120
           R+PRKG      IE RERPKD RS LKK+ DYLKSDCYMYA LVAPQSF+G  G+VK+V 
Sbjct: 61  RAPRKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVV 120

Query: 121 T-------------EVLNESAANMTMEKRICTTDL------VDQENLTSKE 146
           T             EV++ESAANMT E+RIC+TDL      +DQ N T KE
Sbjct: 121 TTEVSARRLILRGDEVMSESAANMTKERRICSTDLMEAEVVMDQPNATRKE 166

The following BLAST results are available for this feature:

BLAST of Lag0033790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933890.1	3.1e-39	60.82	uncharacterized protein LOC111441170 isoform X1 [Cucurbita moschata]	[more]
XP_022968868.1	4.0e-39	60.82	uncharacterized protein LOC111468025 [Cucurbita maxima]	[more]
KAG6587786.1	6.9e-39	60.23	hypothetical protein SDJN03_16351, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035711.1	2.0e-38	59.65	hypothetical protein SDJN02_02509, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532011.1	2.0e-38	59.65	uncharacterized protein LOC111794104 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0033790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..72
None	No IPR available	PANTHER	PTHR36811	OS08G0444440 PROTEIN	coord: 1..155
None	No IPR available	PANTHER	PTHR36811:SF2	OS08G0444440 PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033790.1	Lag0033790.1	mRNA