Lag0033778 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033778
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr3: 1794072 .. 1794407 (-)
RNA-Seq ExpressionLag0033778
SyntenyLag0033778
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGTTTGAAATCCTTGGCTCTTGTTGCTTTGCTTGTTTCGTCTCTTGTTGTGGTGTCCCAGAGCCGAGTGGCCAGGAAAGATTTGGGCCTTGACTTAGGTGGGGTGGGGTTAGGGATTGGAGCTGGAATAGGCCTTGGCGGGAGTGGTTCAGGCTCTGGCTCGGGCTCGAGTTCTAGTTCAAGTTCAAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCGGGCTCGTATGCGGGGTCTCGAGCGGGTTCTGGATCGGGTGGTCGTGGAGGTGGAGGGTACGGATCGGGTTATGGAGGGGGGCATGGAAAATGA

mRNA sequence

ATGGGTTGTTTGAAATCCTTGGCTCTTGTTGCTTTGCTTGTTTCGTCTCTTGTTGTGGTGTCCCAGAGCCGAGTGGCCAGGAAAGATTTGGGCCTTGACTTAGGTGGGGTGGGGTTAGGGATTGGAGCTGGAATAGGCCTTGGCGGGAGTGGTTCAGGCTCTGGCTCGGGCTCGAGTTCTAGTTCAAGTTCAAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCGGGCTCGTATGCGGGGTCTCGAGCGGGTTCTGGATCGGGTGGTCGTGGAGGTGGAGGGTACGGATCGGGTTATGGAGGGGGGCATGGAAAATGA

Coding sequence (CDS)

ATGGGTTGTTTGAAATCCTTGGCTCTTGTTGCTTTGCTTGTTTCGTCTCTTGTTGTGGTGTCCCAGAGCCGAGTGGCCAGGAAAGATTTGGGCCTTGACTTAGGTGGGGTGGGGTTAGGGATTGGAGCTGGAATAGGCCTTGGCGGGAGTGGTTCAGGCTCTGGCTCGGGCTCGAGTTCTAGTTCAAGTTCAAGTTCTAGTTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCGGGCTCGTATGCGGGGTCTCGAGCGGGTTCTGGATCGGGTGGTCGTGGAGGTGGAGGGTACGGATCGGGTTATGGAGGGGGGCATGGAAAATGA

Protein sequence

MGCLKSLALVALLVSSLVVVSQSRVARKDLGLDLGGVGLGIGAGIGLGGSGSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGYGSGYGGGHGK
Homology
BLAST of Lag0033778 vs. NCBI nr
Match: XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 101/123 (82.11%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 1   MGCLKSLALVALLVSSLVVVSQSRVARKDLGLDLGGVGLGIGAGIGLG------GSGSGS 60
           MG  KSL L A+LVSSL+VVS+SRVARKDLGLDLGGVG+GIGAGIG+G      GSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG------GGGYGSGYGGG 112
           GS SSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG      GGGYGSGYGGG
Sbjct: 61  GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYGGG 120

BLAST of Lag0033778 vs. NCBI nr
Match: XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-24
Identity = 101/125 (80.80%), Postives = 106/125 (84.80%), Query Frame = 0

Query: 1   MGCLKSLALVALLVSSLVVVSQSRVARKDLGLDLGGVGLGIGAGIGLG--------GSGS 60
           MG  KSL L A+LVSSL+VVS+SRVARKDLGLDLGGVG+GIGAGIG+G        GSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG------GGGYGSGYG 112
           GSGS SSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG      GGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120

BLAST of Lag0033778 vs. NCBI nr
Match: XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 101/125 (80.80%), Postives = 106/125 (84.80%), Query Frame = 0

Query: 1   MGCLKSLALVALLVSSLVVVSQSRVARKDLGLDLGGVGLGIGAGIGLG--------GSGS 60
           MG LKSL L A+LVSSL+VVS+SRVARKDLGLDLGGVG+GIGAGIG+G        GSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG------GGGYGSGYG 112
           GSGS SSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG G      GGGYGSGYG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120

BLAST of Lag0033778 vs. NCBI nr
Match: KAG6589747.1 (hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-24
Identity = 100/121 (82.64%), Postives = 105/121 (86.78%), Query Frame = 0

Query: 1   MGCLKSLALVALLVSSLVVVSQSRVARKDLGLDLGGVGLGIGAGIGLG----GSGSGSGS 60
           MG  KSL L A+LVSSL+VVS+SRVARKDLGLDLGGVG+GIGAGIG+G    GSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG------GGGYGSGYGGGHG 112
            SSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG RG      GGGYGSGYGGGHG
Sbjct: 61  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDRGGGGSGYGGGYGSGYGGGHG 120

BLAST of Lag0033778 vs. NCBI nr
Match: XP_004146662.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypothetical protein Csa_019748 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 102/128 (79.69%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MGCLKSLALVALLVSSLVVV-SQSRVARKDLGLDLGGVGLGIGAGIGLG----------G 60
           MG LKSL L ALLVSSL VV SQSRVARKDLGLDLGGVG+G+GAG+G+G          G
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG------GGGYGS 112
           SGSGSGS SSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRG      GGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023515822.12.3e-2482.11counting factor 45-1-like [Cucurbita pepo subsp. pepo][more]
XP_022921886.14.0e-2480.80glycine-rich cell wall structural protein 2-like [Cucurbita moschata][more]
XP_022988598.15.2e-2480.80glycine-rich cell wall structural protein 2-like [Cucurbita maxima][more]
KAG6589747.18.8e-2482.64hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004146662.11.5e-2379.69glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypoth... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..111
NoneNo IPR availablePANTHERPTHR38934:SF13GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATEDcoord: 1..110
NoneNo IPR availablePANTHERPTHR38934HYPHALLY REGULATED CELL WALL PROTEIN 1coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033778.1Lag0033778.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane