Lag0033700 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033700
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 1215535 .. 1217133 (+)
RNA-Seq Expression	Lag0033700
Synteny	Lag0033700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCAATTAATGCACAAGCTTCTCTTCTCCTTTTCTTCTTCTTCTTCTTCCTCTTTCATGAGGCTCAAGGTATGCAAATTTTGCCATTTCTTTAAGATGGGTTTTGTTTTTGTGTTGTTTTTATTTGCATAAATGGAGAATGATAATGATTGTGGAAGTTTTTTCTATGTATTGTGAAGGCATTCGCTTGGGGAATTGGATGATGAAGCCAGTTGGGCTGCTCGAGAAAGCACTTGTGAGTTTTCTTTTAAATTAAAGCGCCAGCCTTTCTTTTTTGGGGGTTTCTAATTTTTTCCTTTCTAAATCTCTAAATCTTGATGGCTCAACATTTAATGCAGGAAGAGAAAAATCTACTGATAGAAGAAGGTTTTAGGAAGATGAATCTCTTCAAAAATCCGCATGGTAATTCAGGTATGTTGTTTTCAGATGAGTGCGATTTGAAGGGTAGGTTTGAAGTGTTTAATTTTGAAAAAAAAAAATCATTTTTGACAAAAATTCAAGTGTTTGTCAACCACTAAAAATGACTTATTAAAAAATGAAATTAAGAAATAAATCATCTTGGGAGAAACAATTGAAAGTAAATTTTTTAAAAAGTTTTTAAATATATAATAACTTGAGTATATAAATGTAACATGTTTAGATTCTAAACAATTTTTATACATAATGTTTAAAAGAAAATGCATTCTTGAAAAACATTTAAACTAAAAGGTATTTCAAACGGACCCTAAGTCTTCTTCTATAATCATTTTATTGCGATTGAAAAGTCGAGCTTATACTAACACTATTTTCAACCATGTGTTTCTTTATTTTATTATCTATTTTTAAAAACATTTTCAAAATCAGAGACAAATTTTGAAAAGCTTATTTTTATTTTTTTAAATTTAACTTATAATAATTCAAATGTATTTTTTTGAAAAAGTAAAATAATATACTAAAAATTTGTATAGAAGTCAACATAACAATTTAAAAAAAAAAAAATGTTATGGAATAAGCCTAATATTTCAAAATTGTTGCATTAAATTGTGCCCCAAAAAGTTAATGCAACAACATCATAAAAAACAACCCAAATGGGACATTTCACACTTTATTTTACATCTCATAAGCCATGTCTGAAGTGGGTTTGACATTTATGATGCAGGAAACAGTAGAAAGCTTCTCACTGCAACCCCTTCCTCAACAAGGGTTAGTCCCTTCATCATTTCAACTCATCATTTTTACAAAAACATATATAAATATATATCTATATATATCGTTCTTCATTAAATCGTCACTAAATCTAAAAACTTAAGTTCGATCTTTCGTTCTTACTCCAAAAGCACGACAAAAAATCCTGACTGACACTACAGAAATTCAAACACACACGACCTTTTGTTATGATACTGCATCAAAATCACTACGACAAATTTAAATGTCTTATGCATACTAATTTTATGTTTGCAATACAGAGTGTGAAAGAGAAGGGTTTGGGCAATAATAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGCCTTCAACATTATCCAGATCACCTCATAGACATTGCAGAAATGGACTATTCCCCAGCAAAAAGAAAGCCTCCAATACACAACTGA

mRNA sequence

ATGAGGTCAATTAATGCACAAGCTTCTCTTCTCCTTTTCTTCTTCTTCTTCTTCCTCTTTCATGAGGCTCAAGGCATTCGCTTGGGGAATTGGATGATGAAGCCAGTTGGGCTGCTCGAGAAAGCACTTGAAGAGAAAAATCTACTGATAGAAGAAGGTTTTAGGAAGATGAATCTCTTCAAAAATCCGCATGGTAATTCAGGAAACAGTAGAAAGCTTCTCACTGCAACCCCTTCCTCAACAAGGAGTGTGAAAGAGAAGGGTTTGGGCAATAATAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGCCTTCAACATTATCCAGATCACCTCATAGACATTGCAGAAATGGACTATTCCCCAGCAAAAAGAAAGCCTCCAATACACAACTGA

Coding sequence (CDS)

ATGAGGTCAATTAATGCACAAGCTTCTCTTCTCCTTTTCTTCTTCTTCTTCTTCCTCTTTCATGAGGCTCAAGGCATTCGCTTGGGGAATTGGATGATGAAGCCAGTTGGGCTGCTCGAGAAAGCACTTGAAGAGAAAAATCTACTGATAGAAGAAGGTTTTAGGAAGATGAATCTCTTCAAAAATCCGCATGGTAATTCAGGAAACAGTAGAAAGCTTCTCACTGCAACCCCTTCCTCAACAAGGAGTGTGAAAGAGAAGGGTTTGGGCAATAATAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGCCTTCAACATTATCCAGATCACCTCATAGACATTGCAGAAATGGACTATTCCCCAGCAAAAAGAAAGCCTCCAATACACAACTGA

Protein sequence

MRSINAQASLLLFFFFFFLFHEAQGIRLGNWMMKPVGLLEKALEEKNLLIEEGFRKMNLFKNPHGNSGNSRKLLTATPSSTRSVKEKGLGNNNSEAVSENLEAGLQHYPDHLIDIAEMDYSPAKRKPPIHN

Homology

[Close]

BLAST of Lag0033700 vs. NCBI nr
Match: XP_022135362.1 (uncharacterized protein LOC111007333 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 90/158 (56.96%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 1   MRSINAQASLLLFFFFFFLFHEAQGIRLGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NL 60
           MRS N  ASLLL   F FL ++AQGIRLGN ++KP+G LEK+L E++ LIEEGF K+  L
Sbjct: 1   MRSTNVLASLLL--IFSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTL 60

Query: 61  FKNPHGNSGNSRKLLTA------TPSSTR--------------------SVKEKGLGNNN 120
            +    NSGN RKLLTA      TPS TR                    SVK+K    +N
Sbjct: 61  CRKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPISKKEELSVKDK-KELDN 120

Query: 121 SEAVSENLEAGLQHYPDHLIDIAEMDYSPAKRKPPIHN 132
           SEAVSENLEAG +HYPD L+DIAEMDYSPAKRKPPIHN
Sbjct: 121 SEAVSENLEAGQEHYPD-LVDIAEMDYSPAKRKPPIHN 154

[Close]

BLAST of Lag0033700 vs. NCBI nr
Match: XP_038876887.1 (uncharacterized protein LOC120069249 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 90/160 (56.25%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 1   MRSIN-AQASLLL---FFFFFFLFHEAQGIRLGNWMMKPVGLLEKALEEKNLLIEEGFRK 60
           MRS N A++SLLL     F FFL +EAQGIR GN M+KP+G LEK LEE++ LI EGFRK
Sbjct: 1   MRSNNYARSSLLLVVVVVFIFFLSNEAQGIRFGNGMIKPLGHLEKTLEEESRLIVEGFRK 60

Query: 61  MNLFKNPHGNSGNSRKLLTAT---PS----STRSVKEKGLGN------------------ 120
           + L +N H NSGN+RKLLTAT   PS    STR+ +    GN                  
Sbjct: 61  ITLCENGHCNSGNNRKLLTATSPIPSSPTPSTRNNEGNKKGNPMSSSHKEDPSVKRKDNL 120

Query: 121 NNSEAVSENLEAGLQHYPDHLIDIAEMDYSPAKRKPPIHN 132
            NSEAVS+NLEA L      LIDIAEMDYSPAKRKPPIHN
Sbjct: 121 ENSEAVSKNLEANLD-----LIDIAEMDYSPAKRKPPIHN 155

[Close]

BLAST of Lag0033700 vs. NCBI nr
Match: XP_022159421.1 (uncharacterized protein LOC111025844 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 6.8e-23
Identity = 85/158 (53.80%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 1   MRSINAQASLLLFFFFFFLFHEAQGIRLGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NL 60
           MRS N  ASLLL   F FL ++AQGIRLGN ++KP+G LEK+L E++ LIEEGF K+  L
Sbjct: 1   MRSTNVLASLLL--IFSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTL 60

Query: 61  FKNPHGNSGNSRKLLTA------TPSSTR--------------------SVKEKGLGNNN 120
            +    NSGN RKLLTA      TPS TR                    SVK+K    +N
Sbjct: 61  CRKGQCNSGNIRKLLTATSPSSSTPSITRNNDEGGNFRRANPISKKEELSVKDK-KELDN 120

Query: 121 SEAVSENLEAGLQHYPDHLIDIAEMDYSPAKRKPPIHN 132
           SEAVSENLEAG +H PD L DIAEMDYS A+ KPPIH+
Sbjct: 121 SEAVSENLEAGQEHNPD-LGDIAEMDYSLARGKPPIHH 154

[Close]

BLAST of Lag0033700 vs. NCBI nr
Match: XP_022135297.1 (uncharacterized protein LOC111007293 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 78/144 (54.17%), Postives = 91/144 (63.19%), Query Frame = 0


Query: 15  FFFFLFHEAQGIRLGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLFKNPHGNSGNSRKL 74
           F   L  +  GIRLGN ++KP+G LEK+L E++ LIEEGF K+  L +    NSGN RKL
Sbjct: 52  FELSLQDDEDGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKL 111

Query: 75  LTA------TPSSTR--------------------SVKEKGLGNNNSEAVSENLEAGLQH 132
           LTA      TPS TR                    SVK+K    +NSEAVSENLEAG +H
Sbjct: 112 LTATSPSSSTPSITRNNEEGENFKRGSPISKKEELSVKDK-KELDNSEAVSENLEAGQEH 171

[Close]

BLAST of Lag0033700 vs. NCBI nr
Match: XP_022933409.1 (uncharacterized protein LOC111440836 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-21
Identity = 79/148 (53.38%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 1   MRSINAQASLLLFFFFFFLFHEAQGIRLGNWMMKPVGLLEKALEEKNLLIEEGFRKMNLF 60
           MR I+  ASLLL    FFLF  +QG+RLGN +MKP+ LL   LEE+  L+EE        
Sbjct: 1   MRPIHVLASLLL---MFFLFDHSQGVRLGNGLMKPL-LLGTPLEEEVPLVEE-------- 60

Query: 61  KNPHGNSGNSRKLL------TATPSSTRSVKEKGLGN--------NNSEAVSENLEAG-- 120
            N H NSG SRKLL      + TPS+TR+ +    GN         +S+AVSENLEAG  
Sbjct: 61  -NGHWNSGKSRKLLMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHE 120

Query: 121 -LQHYPDHLIDIAEMDYSPAKRKPPIHN 132
             QHYPD LI+IAEMDYSPA RKPPIHN
Sbjct: 121 QQQHYPD-LIEIAEMDYSPATRKPPIHN 134

The following BLAST results are available for this feature:

BLAST of Lag0033700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135362.1	1.2e-27	56.96	uncharacterized protein LOC111007333 [Momordica charantia]	[more]
XP_038876887.1	2.9e-26	56.25	uncharacterized protein LOC120069249 [Benincasa hispida]	[more]
XP_022159421.1	6.8e-23	53.80	uncharacterized protein LOC111025844 [Momordica charantia]	[more]
XP_022135297.1	3.4e-22	54.17	uncharacterized protein LOC111007293 [Momordica charantia]	[more]
XP_022933409.1	6.3e-21	53.38	uncharacterized protein LOC111440836 [Cucurbita moschata]	[more]

BLAST of Lag0033700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..94
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 101..131
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 10..95
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 101..131
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 10..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033700.1	Lag0033700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity