Lag0033699 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033699
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionANK_REP_REGION domain-containing protein
Locationchr3: 1201094 .. 1201546 (-)
RNA-Seq ExpressionLag0033699
SyntenyLag0033699
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTTTCTATCAGCTTCCATTTCTTCTCTACTTTTCCGGTCATCTCCCTCGGTCTTTTGGTCGACAGAAGGGCTTGAGCTTTTGGCCATGGCGGCGGCCGCTGCGTGGGTTAATGAATACCACCAGAGGGGCTTCCGGTGGCGGCGGGACCACATTTCCGGTGGCGATGAGGATACGGCTTTACACTGTGCTGCGAGGCTGGGTAACTTTAAATCCATGGAGAGGCTGGTGCTGGCAGATCCCAAGCCCTGTGGTATGCTGAACAAGGTTGGCGAATCTCCGCTGTTCTTGGCCGTCGCTGTGGGATTTCGGGCGGCTCCTCGGATTTTCATCGATCGAGCACCGTCGTCGGCATCGTATAAAGGAGCAATGGGTTTAACAGCTTTGCATCCCACACCCAGCTACTTCACCGATTACCGTGAGGAACCGATTATTATTTGCGATTATTAA

mRNA sequence

ATGTCCTTTCTATCAGCTTCCATTTCTTCTCTACTTTTCCGGTCATCTCCCTCGGTCTTTTGGTCGACAGAAGGGCTTGAGCTTTTGGCCATGGCGGCGGCCGCTGCGTGGGTTAATGAATACCACCAGAGGGGCTTCCGGTGGCGGCGGGACCACATTTCCGGTGGCGATGAGGATACGGCTTTACACTGTGCTGCGAGGCTGGGTAACTTTAAATCCATGGAGAGGCTGGTGCTGGCAGATCCCAAGCCCTGTGGTATGCTGAACAAGGTTGGCGAATCTCCGCTGTTCTTGGCCGTCGCTGTGGGATTTCGGGCGGCTCCTCGGATTTTCATCGATCGAGCACCGTCGTCGGCATCGTATAAAGGAGCAATGGGTTTAACAGCTTTGCATCCCACACCCAGCTACTTCACCGATTACCGTGAGGAACCGATTATTATTTGCGATTATTAA

Coding sequence (CDS)

ATGTCCTTTCTATCAGCTTCCATTTCTTCTCTACTTTTCCGGTCATCTCCCTCGGTCTTTTGGTCGACAGAAGGGCTTGAGCTTTTGGCCATGGCGGCGGCCGCTGCGTGGGTTAATGAATACCACCAGAGGGGCTTCCGGTGGCGGCGGGACCACATTTCCGGTGGCGATGAGGATACGGCTTTACACTGTGCTGCGAGGCTGGGTAACTTTAAATCCATGGAGAGGCTGGTGCTGGCAGATCCCAAGCCCTGTGGTATGCTGAACAAGGTTGGCGAATCTCCGCTGTTCTTGGCCGTCGCTGTGGGATTTCGGGCGGCTCCTCGGATTTTCATCGATCGAGCACCGTCGTCGGCATCGTATAAAGGAGCAATGGGTTTAACAGCTTTGCATCCCACACCCAGCTACTTCACCGATTACCGTGAGGAACCGATTATTATTTGCGATTATTAA

Protein sequence

MSFLSASISSLLFRSSPSVFWSTEGLELLAMAAAAAWVNEYHQRGFRWRRDHISGGDEDTALHCAARLGNFKSMERLVLADPKPCGMLNKVGESPLFLAVAVGFRAAPRIFIDRAPSSASYKGAMGLTALHPTPSYFTDYREEPIIICDY
Homology
BLAST of Lag0033699 vs. NCBI nr
Match: KAA0063583.1 (protein ACCELERATED CELL DEATH 6-like [Cucumis melo var. makuwa] >TYJ97910.1 protein ACCELERATED CELL DEATH 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-16
Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 0

Query: 3   FLSASISSLLFRSSPSVFWSTEGLELLAM-AAAAAWVNEYHQRGFRWRR----DHISGGD 62
           F     +  + R   ++ W   G    A+  AA   + E+ +   ++RR     +++G  
Sbjct: 46  FRQLGFAKAIVRDCEALLWLQNGAGDTALHVAAKEALPEFVELLIQFRRLLAMVNLNG-- 105

Query: 63  EDTALHCAARLGNFKSMERLVLADPKPCGMLNKVGESPLFLAVAVGFRAAPRIFIDRAPS 122
            DTALHCAAR+G+   +E++V A+P+ CG++N  GESPL+LAVA GF   P++ I +A  
Sbjct: 106 -DTALHCAARIGSLICVEKIVEAEPELCGVVNNNGESPLYLAVAAGFWEVPQVIIRKAEL 165

Query: 123 SASYKGAMGLTALHPTPSY 137
            ASYKGA GLTALHPT  Y
Sbjct: 166 LASYKGAKGLTALHPTLFY 181

BLAST of Lag0033699 vs. NCBI nr
Match: XP_008456265.1 (PREDICTED: protein ACCELERATED CELL DEATH 6-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-16
Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 0

Query: 3   FLSASISSLLFRSSPSVFWSTEGLELLAM-AAAAAWVNEYHQRGFRWRR----DHISGGD 62
           F     +  + R   ++ W   G    A+  AA   + E+ +   ++RR     +++G  
Sbjct: 46  FRQLGFAKAIVRDCEALLWLQNGAGDTALHVAAKEALPEFVELLIQFRRLLAMVNLNG-- 105

Query: 63  EDTALHCAARLGNFKSMERLVLADPKPCGMLNKVGESPLFLAVAVGFRAAPRIFIDRAPS 122
            DTALHCAAR+G+   +E++V A+P+ CG++N  GESPL+LAVA GF   P++ I +A  
Sbjct: 106 -DTALHCAARIGSLICVEKIVEAEPELCGVVNNNGESPLYLAVAAGFWEVPQVIIRKAEL 165

Query: 123 SASYKGAMGLTALHPTPSY 137
            ASYKGA GLTALHPT  Y
Sbjct: 166 LASYKGAKGLTALHPTLFY 181

BLAST of Lag0033699 vs. NCBI nr
Match: XP_011648740.1 (protein ACCELERATED CELL DEATH 6 [Cucumis sativus] >KGN60784.1 hypothetical protein Csa_019306 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 59  DTALHCAARLGNFKSMERLVLADPKPCGMLNKVGESPLFLAVAVGFRAAPRIFIDRAPSS 118
           DTALHCAAR+G+   +E++V ADP+ C ++N  GESPL+LAVA GF   P+  I +A   
Sbjct: 104 DTALHCAARIGSLICVEKIVEADPELCRVVNNSGESPLYLAVAAGFWEVPQSIIRKANLL 163

Query: 119 ASYKGAMGLTALHPT---PSY-------FTDYREEPI 146
           ASY GA GLTALHPT   P+Y       F ++R+E I
Sbjct: 164 ASYTGAKGLTALHPTLFYPNYDFEIIKLFVEWRKEMI 200

BLAST of Lag0033699 vs. NCBI nr
Match: XP_038877632.1 (ankyrin repeat-containing protein At5g02620-like [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-15
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 59  DTALHCAARLGNFKSMERLVLADPKPCGMLNKVGESPLFLAVAVGFRAAPRIFIDRAPSS 118
           DTALHCAAR+G+   +E++V ADP+ CG++N  GES L+LAVA  +   P + I  A   
Sbjct: 105 DTALHCAARIGSLICVEKMVEADPELCGIVNNNGESALYLAVAAAYWEVPEVIIREAKLL 164

Query: 119 ASYKGAMGLTALHPTPSYFTDY 141
           ASYKGA GLTALHPT  +F +Y
Sbjct: 165 ASYKGAKGLTALHPT-LFFPNY 185

BLAST of Lag0033699 vs. NCBI nr
Match: XP_022143169.1 (ankyrin-2-like [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-14
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 57  DEDTALHCAARLGNFKSMERLVLADPKPCGMLNKVGESPLFLAVAVGFRAAPRIFIDRAP 116
           ++DTALHCAAR G+ +S++ L  AD + C  +N   ESPL+L VA GF    +  ID AP
Sbjct: 114 NKDTALHCAARSGSCESVKLLAEADTEVCSFVNNADESPLYLCVASGFYGIHQYIIDCAP 173

Query: 117 SSASYKGAMGLTALHPTPSYFTDYREEPI 146
           SSA YKG  GLTALHPT  +F  Y  E I
Sbjct: 174 SSALYKGPRGLTALHPT-LFFQTYSLEKI 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063583.13.2e-1641.01protein ACCELERATED CELL DEATH 6-like [Cucumis melo var. makuwa] >TYJ97910.1 pro... [more]
XP_008456265.13.2e-1641.01PREDICTED: protein ACCELERATED CELL DEATH 6-like [Cucumis melo][more]
XP_011648740.11.2e-1551.55protein ACCELERATED CELL DEATH 6 [Cucumis sativus] >KGN60784.1 hypothetical prot... [more]
XP_038877632.15.9e-1554.88ankyrin repeat-containing protein At5g02620-like [Benincasa hispida][more]
XP_022143169.13.0e-1452.81ankyrin-2-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 24..136
e-value: 1.9E-7
score: 32.7
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 55..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033699.1Lag0033699.1mRNA