Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACACCGGCGACGGCGACGGCGACGGCGGCGATCTTTCTCTTGCTTTCAGGTTTGAGTATTATTGTCCTTTTAAATTGTGATTTGATGGGGCGATGGGTTCCGATTGTGGGGTTGTTGGTGGTTGCCGGAGTGGCGGTGGTGGCGGCGAGAGCCACCATGGTGGCCTGGATCACGGTGCTGGTGCTGTTGGCCTTCGCCGGAAACCGGCGGCGGGTTTTGGTGAAACAGGGAAGACAGATCACCGCCGACGTAGCCATGTACTTGGCCGCCGTGTTGGTTAAAGAAAGAGGGCTTCTTGCTGTTGCTTTCGCCGCCGTCTTCAGCTTCGTCGCCGTCATTCGCTCGACGGAGATCGATCCACTTTCTGTTTCTGTTTAA mRNA sequence
ATGTTCACACCGGCGACGGCGACGGCGACGGCGGCGATCTTTCTCTTGCTTTCAGGTTTGAGTATTATTGTCCTTTTAAATTGTGATTTGATGGGGCGATGGGTTCCGATTGTGGGGTTGTTGGTGGTTGCCGGAGTGGCGGTGGTGGCGGCGAGAGCCACCATGGTGGCCTGGATCACGGTGCTGGTGCTGTTGGCCTTCGCCGGAAACCGGCGGCGGGTTTTGGTGAAACAGGGAAGACAGATCACCGCCGACGTAGCCATGTACTTGGCCGCCGTGTTGGTTAAAGAAAGAGGGCTTCTTGCTGTTGCTTTCGCCGCCGTCTTCAGCTTCGTCGCCGTCATTCGCTCGACGGAGATCGATCCACTTTCTGTTTCTGTTTAA Coding sequence (CDS)
ATGTTCACACCGGCGACGGCGACGGCGACGGCGGCGATCTTTCTCTTGCTTTCAGGTTTGAGTATTATTGTCCTTTTAAATTGTGATTTGATGGGGCGATGGGTTCCGATTGTGGGGTTGTTGGTGGTTGCCGGAGTGGCGGTGGTGGCGGCGAGAGCCACCATGGTGGCCTGGATCACGGTGCTGGTGCTGTTGGCCTTCGCCGGAAACCGGCGGCGGGTTTTGGTGAAACAGGGAAGACAGATCACCGCCGACGTAGCCATGTACTTGGCCGCCGTGTTGGTTAAAGAAAGAGGGCTTCTTGCTGTTGCTTTCGCCGCCGTCTTCAGCTTCGTCGCCGTCATTCGCTCGACGGAGATCGATCCACTTTCTGTTTCTGTTTAA Protein sequence
MFTPATATATAAIFLLLSGLSIIVLLNCDLMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLAAVLVKERGLLAVAFAAVFSFVAVIRSTEIDPLSVSV
Homology
BLAST of Lag0033670 vs. NCBI nr
Match:
XP_023004957.1 (uncharacterized protein LOC111498104 [Cucurbita maxima])
HSP 1 Score: 177.2 bits (448), Expect = 9.1e-41
Identity = 111/128 (86.72%), Postives = 116/128 (90.62%), Query Frame = 0
Query: 1 MFTPAT-ATATAAIFLLLSGLSIIVLLNCDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 M TPAT A + IFLLLSG S IV+LN DLMGRWVPIVGLLVVAGVAVVAARATMVAWI Sbjct: 1 MSTPATEAVLLSGIFLLLSG-SCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 Query: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLAAVLVKERGLLAVAFAAVFSFVAVIRSTE 120 TVLVLLAFAGNRRRVLVKQGRQITADVAMYL+AVLVKERGL+AVAFAAV SFVAV+RS E Sbjct: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLSAVLVKERGLVAVAFAAVLSFVAVVRSME 120 Query: 121 IDPLSVSV 128 ID LSVSV Sbjct: 121 IDSLSVSV 127
BLAST of Lag0033670 vs. NCBI nr
Match:
XP_023530771.1 (uncharacterized protein LOC111793221 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 110/128 (85.94%), Postives = 114/128 (89.06%), Query Frame = 0
Query: 1 MFTPAT-ATATAAIFLLLSGLSIIVLLNCDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 M TP T A + IFLLLSG S IV+LN DLMGRWVPIVGLLVVAGVAVVAARATMVAWI Sbjct: 1 MSTPVTEAVLLSGIFLLLSG-SCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 Query: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLAAVLVKERGLLAVAFAAVFSFVAVIRSTE 120 TVLVLLAFAGNRRRVLVKQGRQITADVAMYL AVLVKERGL+AVAFAAV SFVAV+RS E Sbjct: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFVAVVRSME 120 Query: 121 IDPLSVSV 128 ID LSVSV Sbjct: 121 IDSLSVSV 127
BLAST of Lag0033670 vs. NCBI nr
Match:
KAG7021425.1 (hypothetical protein SDJN02_15150, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 109/128 (85.16%), Postives = 113/128 (88.28%), Query Frame = 0
Query: 1 MFTPAT-ATATAAIFLLLSGLSIIVLLNCDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 M TP T A + IFLLLSG S IV+LN DLMGRWVPIVGLLVVAGVAVVAARATMVAWI Sbjct: 1 MSTPVTEAVLLSGIFLLLSG-SCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 Query: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLAAVLVKERGLLAVAFAAVFSFVAVIRSTE 120 TVLVLLAFAGNRRRVLVKQGRQITADVAMYL AVLVKERGL+AVAFAAV SF AV+RS E Sbjct: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSME 120 Query: 121 IDPLSVSV 128 ID LSVSV Sbjct: 121 IDSLSVSV 127
BLAST of Lag0033670 vs. NCBI nr
Match:
KAA0057816.1 (hypothetical protein E6C27_scaffold274G001000 [Cucumis melo var. makuwa] >TYJ98500.1 hypothetical protein E5676_scaffold350G001030 [Cucumis melo var. makuwa])
HSP 1 Score: 171.8 bits (434), Expect = 3.8e-39
Identity = 100/124 (80.65%), Postives = 113/124 (91.13%), Query Frame = 0
Query: 1 MFTPATATATAAIFLLLSGLSIIVLLNCDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60 M TP TATAT+AIF+LLSGL +V + +LMGRW+PI+GLL VAGVA++AARATMVAWIT Sbjct: 7 MLTPVTATATSAIFVLLSGLCYVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWIT 66 Query: 61 VLVLLAFAGNRRRVLVKQGRQITADVAMYLAAVLVKERGLLAVAFAAVFSFVAVIRSTEI 120 VLVLLAFAGNRRRVLVK GR+ITADVAMYLA+V+VKERGLLAVAFAA+FSFVAV RSTEI Sbjct: 67 VLVLLAFAGNRRRVLVKHGRKITADVAMYLASVMVKERGLLAVAFAALFSFVAVARSTEI 126 Query: 121 DPLS 125 D LS Sbjct: 127 DLLS 130
BLAST of Lag0033670 vs. NCBI nr
Match:
XP_022933693.1 (uncharacterized protein LOC111441029 [Cucurbita moschata])
HSP 1 Score: 171.4 bits (433), Expect = 5.0e-39
Identity = 108/128 (84.38%), Postives = 112/128 (87.50%), Query Frame = 0
Query: 1 MFTPAT-ATATAAIFLLLSGLSIIVLLNCDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 M TP T A + IFLLLSG S IV+LN DLMGRWVPIVGLLVVAGVAVVAARATMVAWI Sbjct: 1 MSTPVTEAVLLSGIFLLLSG-SCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWI 60 Query: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLAAVLVKERGLLAVAFAAVFSFVAVIRSTE 120 TVLVLLAFAGNRRRVLVKQGRQITADVAMYL AVLVKERGL+AV FAAV S VAV+RS E Sbjct: 61 TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSME 120 Query: 121 IDPLSVSV 128 ID LSVSV Sbjct: 121 IDSLSVSV 127
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_023004957.1 9.1e-41 86.72 uncharacterized protein LOC111498104 [Cucurbita maxima] [more]
XP_023530771.1 3.5e-40 85.94 uncharacterized protein LOC111793221 [Cucurbita pepo subsp. pepo] [more]
KAG7021425.1 1.3e-39 85.16 hypothetical protein SDJN02_15150, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0057816.1 3.8e-39 80.65 hypothetical protein E6C27_scaffold274G001000 [Cucumis melo var. makuwa] >TYJ985... [more]
XP_022933693.1 5.0e-39 84.38 uncharacterized protein LOC111441029 [Cucurbita moschata] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G T T C A C A C C G G C G A C G G C G A C G G C G A C G G C G G C G A T C T T T C T C T T G C T T T C A G G T T T G A G T A T T A T T G T C C T T T T A A A T T G T G A T T T G A T G G G G C G A T G G G T T C C G A T T G T G G G G T T G T T G G T G G T T G C C G G A G T G G C G G T G G T G G C G G C G A G A G C C A C C A T G G T G G C C T G G A T C A C G G T G C T G G T G C T G T T G G C C T T C G C C G G A A A C C G G C G G C G G G T T T T G G T G A A A C A G G G A A G A C A G A T C A C C G C C G A C G T A G C C A T G T A C T T G G C C G C C G T G T T G G T T A A A G A A A G A G G G C T T C T T G C T G T T G C T T T C G C C G C C G T C T T C A G C T T C G T C G C C G T C A T T C G C T C G A C G G A G A T C G A T C C A C T T T C T G T T T C T G T T T A A 50 100 150 200 250 300 350 Score = Score = Sequence PTHR34656 PTHR34656:SF2
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PANTHER PTHR34656 PYRROLINE-5-CARBOXYLATE REDUCTASE coord: 5..116
None No IPR available PANTHER PTHR34656:SF2 TRANSMEMBRANE PROTEIN coord: 5..116
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0070125
mitochondrial translational elongation
cellular_component
GO:0016021
integral component of membrane
cellular_component
GO:0005739
mitochondrion
molecular_function
GO:0003924
GTPase activity
molecular_function
GO:0005525
GTP binding
molecular_function
GO:0003746
translation elongation factor activity