Lag0033664 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033664
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 952163 .. 955006 (+)
RNA-Seq ExpressionLag0033664
SyntenyLag0033664
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTGGTCGGCCTCGGCCTCGGCAGCGAGACCCCCGTACTAGGTCATTCGGAGTGCTTCATTTCAGGTTCATGTCTGCAAGAGAAGAGTTAGGGAAAAGGCTAGGGTCGGCCTCGGCCTTAAGCCCCCGTTAGCCTAAAATTTGACTCCCTGCATCCATATGTTAGTCCTTGTAGGAAAATAATAAGAGAATAGGTTCGAACATGTAAATTTTAGTAGCACATGTTAAACATAGGTGCTTTTTGTTTAATAGGGAGTGCATATCCCTGGTTACTTGCTTTTTGTTTAATTGGGAGTGCATATCCCCTCTGTAGCCCCCAATCTTAAGTAGAACTTCACTGAAACATAAAGTATGGTTGAGGAAATAGGAGAATACCATTAAAGTTTGTGCCTGGCCTCGGCAAGAGGTGCTCGGGCCAGAGGAGGTGGTGAGATAGACTCGTTGGTGCGGCCTAGTAACACTTGACCTCCTGCAGGGTTGAGCTCCTTAAGCCTGATTTAAGAGTATAACTCTCGTTCCATGCCGACTTATGTATGATTCCTGGTTATCCTGCAAGATATGATAAACTGGACAAAGTAGAGTTGAGAGATTACAACAATGGCTCTGGTCGGCCTCGGGAAGAGGCCGAGCACATCAATCTCTCTCTTTAGCTTATCTGGTCGGCCTCGGCCTCGGGAAGAGGCCGAGCACAGCAGCTAAACCCCTGTACTTGGTCATTCGGAACGCTTCATTCCAGATCCGGGGCTTTTGCAGGTGACTGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAACTCCTCTGTGCTGTTTTCTTACCCGCTCCACGGTTAGGCTTATGTGTGTATTTGTCCGGTCCTACCTTAAGCATCTCCCTGTGTCTTTGAGCACTTCGGCCATGTTAAAAAGTGAATGCGTACTGAGGGTTGGCTTTGGAGCTAGGATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTACTTTTCTCTGTTGTATCCATCCCGAGGGTGCGTACACTCTTTTGGGCAAAACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTGCAAGAGTTTAGTCTCTTTCCACGGGAAAGTGTGGAAGTTTGGCCTCTACAAGAATCATTCCTGTCTAGCCACATGCACCACATCCTATAGAAAAATGCTTTTGCACAAACACAGTATAAAGAACTTTATCTAATTTGCAAGTGTCAACATTGTACCATGGAGAAAAGTTGTGGACATGTGTTATACAAAATGAAAATAAGTAATTGCCCCAATAGCTCCACTGATATTCATAACGTTATCCTAACTTGAATAAGTAAGAAAGGAAAATCAGAATTATCGCAACATGACCATGATTATGATGGACTCGGTTTGTCCTTACTCCCAACCCCCCACTCAAAATATGCGTTCAATACCTTGGGCGTGCATTTTTTGAGTAAGGAGAAACTAACTTCGTACCTGGGCCTCTAGGGGCGGAACTCGACCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGACGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAGGGTGCGTGCACCCAGTTAGGGAAAACTTGGGGAGGTCGAGGAATTTCCCGAGCCCCCACTCAAAATACGCATTCCAGATTTAATGAGTTGCATTTTTTTTTTTTTAGTAAGAAAATATAATGTCATACCTGGTCTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCTGACCTTGGCGTGAGGTTGAGCCTCGCTTCTCCATCACTTTTTTGTTTTCCTCATAGTTGGACTCATGTGCAGATACCTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAGTGGTCGGCCTTAGCCTTGGCATGAGGACGAACACTTTCCCTGCATGGCTTGAGAAGTTTGAGGGAAGCTTGGGGAGGCTTTGGGATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCAGAGGTGCGTACACTCTTCTGGGAAAAGCTTGGGAGGCCTAGGAATTTCCCAGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAG

mRNA sequence

ATGGTACTGGTCGGCCTCGGCCTCGGCAGCGAGACCCCCGTACTAGGTCATTCGGAGTGCTTCATTTCAGATCCGGGGCTTTTGCAGGTGACTGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAACTCCTCTGTGCTGTTTTCTTACCCGCTCCACGGATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTACTTTTCTCTGTTGTATCCATCCCGAGGGGGCGGAACTCGACCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGACGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAGGGTGCGTGCACCCATAAGAAAATATAATGTCATACCTGGTCTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCTGACCTTGGCGTGAGGTTGAGCCTCGCTTCTCCATCACTTTTTTGTTTTCCTCATAGTTGGACTCATGTGCAGATACCTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAGTGGTCGGCCTTAGCCTTGGCATGAGGACGAACACTTTCCCTGCATGGCTTGAGAAGTTTGAGGGAAGCTTGGGGAGGCTTTGGGATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCAGAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAG

Coding sequence (CDS)

ATGGTACTGGTCGGCCTCGGCCTCGGCAGCGAGACCCCCGTACTAGGTCATTCGGAGTGCTTCATTTCAGATCCGGGGCTTTTGCAGGTGACTGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAACTCCTCTGTGCTGTTTTCTTACCCGCTCCACGGATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTACTTTTCTCTGTTGTATCCATCCCGAGGGGGCGGAACTCGACCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGACGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAGGGTGCGTGCACCCATAAGAAAATATAATGTCATACCTGGTCTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCTGACCTTGGCGTGAGGTTGAGCCTCGCTTCTCCATCACTTTTTTGTTTTCCTCATAGTTGGACTCATGTGCAGATACCTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCCATTCCTTGTCTAGTGGTCGGCCTTAGCCTTGGCATGAGGACGAACACTTTCCCTGCATGGCTTGAGAAGTTTGAGGGAAGCTTGGGGAGGCTTTGGGATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCAGAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAAGCCTCTCTTCAAGCTGCATAG

Protein sequence

MVLVGLGLGSETPVLGHSECFISDPGLLQVTGRPRPWHEADQLLCAVFLPAPRMLGLGLGMRLSISSALLATFLCCIHPEGAELDLGLWMVGLGLGMRTTSSSVLFACLFSIPRVRAPIRKYNVIPGLLRTKFILEAEAAGPDLGVRLSLASPSLFCFPHSWTHVQIPGLRSDYRTQSSPIPCLVVGLSLGMRTNTFPAWLEKFEGSLGRLWDFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNSQGLSSSVVVIQRGAYTLLGKSLGRPRNFPGLSSSVVVIPGVRTLFWGKAWGGLGISQASLQAA
Homology
[Close]
BLAST of Lag0033664 vs. NCBI nr
Match: XP_015472393.2 (basic proline-rich protein-like, partial [Parus major])

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-14
Identity = 83/219 (37.90%), Postives = 88/219 (40.18%), Query Frame = 0 

Query: 194 TNTFPAWLEKFEGSLGRLWDFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHP 253
           T   P  L K  G  GR     GPL    G P  A   LG   G P   PGP     G P
Sbjct: 68  TGEAPGPLGKAPGPPGR---GRGPLGTAPGSPGTAPGPLGMGTGPPGTAPGPPGTPPGPP 127

Query: 254 RGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAY 313
             A  L G++   PR  PGPL K  G P       G   G P   PGPL K  G P    
Sbjct: 128 GEAPGLPGEAPRPPRTAPGPLGKAPGPP-------GTPPGPPGTPPGPLGKAPGPPGTPP 187

Query: 314 TLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLG 373
             LGK+LG PR  PGPL K  G P     LLG   G P   PGPL    G        LG
Sbjct: 188 GPLGKALGPPRTAPGPLGKAPGPPGTPPGLLGTPPGPPGTAPGPLGMGTGP-------LG 247

Query: 374 KSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNSQG 413
              G     PGPL    G P  A   LG + G P  + G
Sbjct: 248 MGTGPLGTAPGPLGTPPGLPGEAPGPLGTAPGPPGKTPG 269

[Close]
BLAST of Lag0033664 vs. NCBI nr
Match: KAG8597368.1 (hypothetical protein GDO81_002266 [Engystomops pustulosus])

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-10
Identity = 55/149 (36.91%), Postives = 67/149 (44.97%), Query Frame = 0 

Query: 236 LGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRP 295
           + R  +F GP   R GH        G S+ R R+FPGP   R  H        G S+ R 
Sbjct: 1   MSRHGHFLGPSMSRHGH------FPGPSMSRHRHFPGPSMSRHRH------FPGPSMSRH 60

Query: 296 RNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFP 355
           R+FPGP   R GH        G S+ R R+F GP   R GH       LG S+ R  +FP
Sbjct: 61  RHFPGPNMSRHGH------FPGPSMSRHRHFLGPSMSRHGH------FLGPSMSRHGHFP 119

Query: 356 GPLFKRCGHPRGAYTLLGKSLGRPRNFPG 385
           GP   R GH        G S+ R  +FPG
Sbjct: 121 GPSMSRHGH------FPGPSMSRQGHFPG 119

[Close]
BLAST of Lag0033664 vs. NCBI nr
Match: OWB80996.1 (hypothetical protein B5S32_g5335 [[Candida] boidinii])

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-09
Identity = 63/206 (30.58%), Postives = 82/206 (39.81%), Query Frame = 0 

Query: 235 SLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGR 294
           SLG+P N  G      G P  +      SLG+P N  G      G P  +      SLG+
Sbjct: 202 SLGQPTNSLGQPTNSLGQPTNSLGQPTNSLGQPTNSNGVPTNSLGQPTNSLGQPTNSLGQ 261

Query: 295 PRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNF 354
           P N  G      G P  +      SLG+P N  G      G P  +  +   SLG+P N 
Sbjct: 262 PTNSLGQPTNSLGQPTNSLGQPTNSLGQPTNSLGQPTNSLGQPTNSNGVPTNSLGQPTNS 321

Query: 355 PGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNSQGLS 414
            G      G P         SLG+P N  G      G P  +  +   SLG+P NS G+ 
Sbjct: 322 LGQPTNSLGQPT-------NSLGQPTNSLGQPTNSNGVPTNSNGVPTNSLGQPTNSNGVP 381

Query: 415 SSVVVIQRGAYTLLGKSLGRPRNFPG 441
           ++     +G  T    SLG+P N  G
Sbjct: 382 TN----SKGQPT---NSLGQPTNSLG 393

The following BLAST results are available for this feature:
BLAST of Lag0033664 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_015472393.22.4e-1437.90basic proline-rich protein-like, partial [Parus major][more]
KAG8597368.11.6e-1036.91hypothetical protein GDO81_002266 [Engystomops pustulosus][more]
OWB80996.14.0e-0930.58hypothetical protein B5S32_g5335 [[Candida] boidinii][more]
BLAST of Lag0033664 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0033664 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0033664 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 317..329
e-value: 88.0
score: 4.3
coord: 373..385
e-value: 88.0
score: 4.3
coord: 261..273
e-value: 88.0
score: 4.3
coord: 429..441
e-value: 97.0
score: 4.1
coord: 233..245
e-value: 88.0
score: 4.3
coord: 289..301
e-value: 88.0
score: 4.3
coord: 345..357
e-value: 88.0
score: 4.3
coord: 401..413
e-value: 66.0
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033664.1Lag0033664.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding