Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTTCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCTGCGAATGGGGTTGTAAACGGCGATGCAAGTTCCGAAAGCACTAGCCATCACACCGATGGCAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTGCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATATCTGAGTGATCTTCCAATTCGCTGTCTTAAGTTCGTTAGCCAGTGTTTCTCATGTCTCATTTTGTTGTTATTTGGGAAAAATTCGAGATCGACACAGAATTATTGGGTTTCCCCATGGTACAAATGCTTTGGTGGACTTACTCCATGTACTATGCATTTGATAGATTGCTTGCATTGACTTGGTGTACACTTATGCCAATTAAGCGATTCTAAGCAGAGTTTCATGTTTATTGATAGGCAAAAGCATATGAACCGGGTACGAGTGGCCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTTTCTTGTGTCTTGAGGTTGTAAACTCAAGTCAGTAATTTATTTTTCCTCAAAACTTTTAGGATGTACCTGAAAACTTCCTTTCATGGAATTACAACCAGTTAAAAATTTCAGGCTAAGATTTCGTGAAGGAACCAAATATTTCTGGAAATAGTTTACTTATTAAGACTTTGGAGTCTACTTTTTAGCTTCAACAACGCATGATATATTGTTATTTTTAGATATATCTGTAGTAAGACTTACTAAAATATCTACAAATACTGATGAAACTGAGAAAGTCTTTAGAGATTTCAAGACAACAGTTCTATTTGTATTGTTGTATCACAGTATTAATCTAAGGAAAGATTTTGAAACCAAATAGGCAATAGAGAAAATCAAATGTTGAAATTAATAACATCTTGGTGGAGTTCAAGTCTCAAAGATTTTTGGTGTACTTACAACCTTGTTTGATTATTAGAAATTGGAAGGCTTTTTTTGTGTTAGTTCTTAATTCTTTTGCTCGGGAAGGGGTTCTCTCTCTACCTCTGCCTTTAGGACGTTTTCCTTTTTGTCTATATGAATATATTTGTCTCAGTTTCTTATAAAAATAAATAAATAACATTATGGAGGATATATCATTGACACTATAGATAATATACTTCTTAATTGTCTTATTTTTATCCTTTGTTTAGGTCCTAGAATTGGCATTTTATTTTTCCTTCAACTACTATCTTACAAGGGTCCTATACGTGGTGTCTTTGCAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA
mRNA sequence
ATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTTCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCTGCGAATGGGGTTGTAAACGGCGATGCAAGTTCCGAAAGCACTAGCCATCACACCGATGGCAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTGCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCATATGAACCGGGTACGAGTGGCCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTCCTAGAATTGGCATTTTATTTTTCCTTCAACTACTATCTTACAAGGGTCCTATACGTGGTGTCTTTGCAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA
Coding sequence (CDS)
ATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTTCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCTGCGAATGGGGTTGTAAACGGCGATGCAAGTTCCGAAAGCACTAGCCATCACACCGATGGCAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTGCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCATATGAACCGGGTACGAGTGGCCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTCCTAGAATTGGCATTTTATTTTTCCTTCAACTACTATCTTACAAGGGTCCTATACGTGGTGTCTTTGCAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA
Protein sequence
MMEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Homology
BLAST of Lag0033600 vs. NCBI nr
Match:
XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])
HSP 1 Score: 330.1 bits (845), Expect = 1.5e-86
Identity = 186/222 (83.78%), Postives = 188/222 (84.68%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEK NVLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TA
Sbjct: 1 MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKAYE GTSGHASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Sbjct: 181 ----------ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. NCBI nr
Match:
XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])
HSP 1 Score: 328.9 bits (842), Expect = 3.3e-86
Identity = 186/222 (83.78%), Postives = 187/222 (84.23%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEK VLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TA
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKAYE GTS HASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Sbjct: 181 ----------ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. NCBI nr
Match:
XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84
Identity = 181/222 (81.53%), Postives = 187/222 (84.23%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEKP NVL+L QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA T
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKA+E GTSGHASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
EL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Sbjct: 181 ----------ELMVKNLHIKLLIDQLRELVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. NCBI nr
Match:
XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])
HSP 1 Score: 319.7 bits (818), Expect = 2.0e-83
Identity = 183/223 (82.06%), Postives = 185/223 (82.96%), Query Frame = 0
Query: 1 MMEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAAT 60
MMEEKP NVLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST T
Sbjct: 1 MMEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTT 60
Query: 61 ATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSV 120
ATS L I SPNGPSSHS NGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSV
Sbjct: 61 ATSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSV 120
Query: 121 LALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYY 180
LALRAILAAIPNSQKA AYE GTSG SPADQSEIDKLEQHLS+LRK
Sbjct: 121 LALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRK------------- 180
Query: 181 LTRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Sbjct: 181 -----------ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 197
BLAST of Lag0033600 vs. NCBI nr
Match:
XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])
HSP 1 Score: 305.8 bits (782), Expect = 3.0e-79
Identity = 172/222 (77.48%), Postives = 182/222 (81.98%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
ME+KP ++LAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS TA
Sbjct: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS---TA 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TSAL+I SPNGPS HS NGVVNGDASSEST+HH D SSGGG+GSGGALEEAR RY NSVL
Sbjct: 61 TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIP+SQ AKAYE GTSGHASPADQSEIDKLEQHL NLRK
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Sbjct: 181 ----------ELVNKNLHLKLLIDQLRDLVADISTWQSPCSV 195
BLAST of Lag0033600 vs. ExPASy Swiss-Prot
Match:
Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 6.3e-40
Identity = 107/213 (50.23%), Postives = 137/213 (64.32%), Query Frame = 0
Query: 13 SQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNG 72
+ TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LW ST+AT +SA T NG
Sbjct: 11 TMTTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLW----STSATPSSAATTTGSNG 70
Query: 73 PSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEARARYKNSVLALRAILAAI 132
+ SA+ A+ + TSHH++ + GGG G G L+EA RYKNSV +LRA+LAAI
Sbjct: 71 SALVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAI 130
Query: 133 PNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSL 192
PNSQKAKA E +G SP + EI+KLE+ +LR
Sbjct: 131 PNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLR------------------------ 189
Query: 193 QELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
E+ KN+H+K LID+LR+L+AD+STWQSPCSV
Sbjct: 191 MEIAKKNVHVKELIDKLRELIADISTWQSPCSV 189
BLAST of Lag0033600 vs. ExPASy TrEMBL
Match:
A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 7.2e-87
Identity = 186/222 (83.78%), Postives = 188/222 (84.68%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEK NVLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TA
Sbjct: 1 MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKAYE GTSGHASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Sbjct: 181 ----------ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. ExPASy TrEMBL
Match:
A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)
HSP 1 Score: 328.9 bits (842), Expect = 1.6e-86
Identity = 186/222 (83.78%), Postives = 187/222 (84.23%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEK VLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TA
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKAYE GTS HASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Sbjct: 181 ----------ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. ExPASy TrEMBL
Match:
A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)
HSP 1 Score: 328.9 bits (842), Expect = 1.6e-86
Identity = 186/222 (83.78%), Postives = 187/222 (84.23%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEK VLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TA
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKAYE GTS HASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Sbjct: 181 ----------ELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. ExPASy TrEMBL
Match:
A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)
HSP 1 Score: 323.6 bits (828), Expect = 6.7e-85
Identity = 181/222 (81.53%), Postives = 187/222 (84.23%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEKP NVL+L QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA T
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKA+E GTSGHASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
EL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Sbjct: 181 ----------ELMVKNLHIKLLIDQLRELVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. ExPASy TrEMBL
Match:
A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)
HSP 1 Score: 323.6 bits (828), Expect = 6.7e-85
Identity = 181/222 (81.53%), Postives = 187/222 (84.23%), Query Frame = 0
Query: 2 MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATA 61
MEEKP NVL+L QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA T
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 62 TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVL 121
TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGGGSGSGGALEEAR RYKNSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 122 ALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYL 181
ALRAILAAIPNSQKAKA+E GTSGHASPADQSEIDKLEQHLSNLRK
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRK-------------- 180
Query: 182 TRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
EL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Sbjct: 181 ----------ELMVKNLHIKLLIDQLRELVADVSTWQSPCSV 198
BLAST of Lag0033600 vs. TAIR 10
Match:
AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 165.6 bits (418), Expect = 4.5e-41
Identity = 107/213 (50.23%), Postives = 137/213 (64.32%), Query Frame = 0
Query: 13 SQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNG 72
+ TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LW ST+AT +SA T NG
Sbjct: 11 TMTTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLW----STSATPSSAATTTGSNG 70
Query: 73 PSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEARARYKNSVLALRAILAAI 132
+ SA+ A+ + TSHH++ + GGG G G L+EA RYKNSV +LRA+LAAI
Sbjct: 71 SALVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAI 130
Query: 133 PNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSL 192
PNSQKAKA E +G SP + EI+KLE+ +LR
Sbjct: 131 PNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLR------------------------ 189
Query: 193 QELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 224
E+ KN+H+K LID+LR+L+AD+STWQSPCSV
Sbjct: 191 MEIAKKNVHVKELIDKLRELIADISTWQSPCSV 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_004138044.1 | 1.5e-86 | 83.78 | mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634... | [more] |
XP_008464424.1 | 3.3e-86 | 83.78 | PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]... | [more] |
XP_022921424.1 | 1.4e-84 | 81.53 | mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_... | [more] |
XP_038879540.1 | 2.0e-83 | 82.06 | mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida] | [more] |
XP_022134927.1 | 3.0e-79 | 77.48 | mediator of RNA polymerase II transcription subunit 30 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Q9FMV4 | 6.3e-40 | 50.23 | Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LNW4 | 7.2e-87 | 83.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1 | [more] |
A0A5A7USU3 | 1.6e-86 | 83.78 | Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku... | [more] |
A0A1S3CMZ7 | 1.6e-86 | 83.78 | mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G... | [more] |
A0A6J1JFZ2 | 6.7e-85 | 81.53 | mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36... | [more] |
A0A6J1E0F5 | 6.7e-85 | 81.53 | mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=... | [more] |
Match Name | E-value | Identity | Description | |
AT5G63480.1 | 4.5e-41 | 50.23 | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... | [more] |