Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATATCGAATTGGACGCCAAGTCCCAGCAGCCCCATTCTCAGAAGCTCCGTTTTTCTTCCCAGATCATCCTCAGAGCCCTGGTCATCTGCTCTACCTTGGCTGCCACCTGGATCATCCTCACCGCCAAGCAATCCGTCCTCATCTTTGGCATCCCTTTTGACGCCCGATACAGCTACTCCCCTGCTTACAAGTCAGACCACACAATAACTCTGCTCTACTTTACTTTAATTTCCCCTTTGTTCATTCTCATTCTGATGATGATCCAACAATAATAGTATAATTATTATAATATTCGAAACAAATGATTTCTGTTTGGATGATGCAGGTTTTTTGCTCTGGCCAACGCTATTGCATGCGGCTTCACTCTTCTCTCGGCGTGCCTTGTTTTCATATCAAGTCGTCAATTGCGGTTACGGAATAACCAAACAAACTACATCTTCTTTATCCACGATTTGGTGATGATGGTATTGGTGGTGGGCGGATGCGCTGCTGCGACGGCCATCGGGTACGTGGGCAAGTACGGGAACAGCCACACGGGGTGGTCGCCGATCTGTGATAATTTTGGCAACTTCTGTAATCGCGTGACCACTTCCATCGCCCTCTCTTACTTGGCTGTCCTTTGCCTCTTCATACTCACCATAATCTCTGCAACCACCCAAGTCCACCGCGTTCCACACTAA
mRNA sequence
ATGGCCGATATCGAATTGGACGCCAAGTCCCAGCAGCCCCATTCTCAGAAGCTCCGTTTTTCTTCCCAGATCATCCTCAGAGCCCTGGTCATCTGCTCTACCTTGGCTGCCACCTGGATCATCCTCACCGCCAAGCAATCCGTCCTCATCTTTGGCATCCCTTTTGACGCCCGATACAGCTACTCCCCTGCTTACAAGTTTTTTGCTCTGGCCAACGCTATTGCATGCGGCTTCACTCTTCTCTCGGCGTGCCTTGTTTTCATATCAAGTCGTCAATTGCGGTTACGGAATAACCAAACAAACTACATCTTCTTTATCCACGATTTGGTGATGATGGTATTGGTGGTGGGCGGATGCGCTGCTGCGACGGCCATCGGGTACGTGGGCAAGTACGGGAACAGCCACACGGGGTGGTCGCCGATCTGTGATAATTTTGGCAACTTCTGTAATCGCGTGACCACTTCCATCGCCCTCTCTTACTTGGCTGTCCTTTGCCTCTTCATACTCACCATAATCTCTGCAACCACCCAAGTCCACCGCGTTCCACACTAA
Coding sequence (CDS)
ATGGCCGATATCGAATTGGACGCCAAGTCCCAGCAGCCCCATTCTCAGAAGCTCCGTTTTTCTTCCCAGATCATCCTCAGAGCCCTGGTCATCTGCTCTACCTTGGCTGCCACCTGGATCATCCTCACCGCCAAGCAATCCGTCCTCATCTTTGGCATCCCTTTTGACGCCCGATACAGCTACTCCCCTGCTTACAAGTTTTTTGCTCTGGCCAACGCTATTGCATGCGGCTTCACTCTTCTCTCGGCGTGCCTTGTTTTCATATCAAGTCGTCAATTGCGGTTACGGAATAACCAAACAAACTACATCTTCTTTATCCACGATTTGGTGATGATGGTATTGGTGGTGGGCGGATGCGCTGCTGCGACGGCCATCGGGTACGTGGGCAAGTACGGGAACAGCCACACGGGGTGGTCGCCGATCTGTGATAATTTTGGCAACTTCTGTAATCGCGTGACCACTTCCATCGCCCTCTCTTACTTGGCTGTCCTTTGCCTCTTCATACTCACCATAATCTCTGCAACCACCCAAGTCCACCGCGTTCCACACTAA
Protein sequence
MADIELDAKSQQPHSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYSYSPAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGCAAATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISATTQVHRVPH
Homology
BLAST of Lag0033567 vs. NCBI nr
Match:
XP_022921629.1 (CASP-like protein 1F1 [Cucurbita moschata])
HSP 1 Score: 248.1 bits (632), Expect = 6.1e-62
Identity = 131/183 (71.58%), Postives = 151/183 (82.51%), Query Frame = 0
Query: 1 MAD--IELDAKSQQPHSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDAR 60
MAD +EL+AKSQ PH+ L SSQIILRALVI STLAA W ++TAKQSV+IFG DAR
Sbjct: 1 MADNNVELEAKSQGPHA-NLYLSSQIILRALVISSTLAAIWTLVTAKQSVVIFGFTLDAR 60
Query: 61 YSYSPAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGG 120
YSYS A+KFFA+ANAIACGF LLS C VFIS+RQL L N Q N+ FF+HDL+MM LV+ G
Sbjct: 61 YSYSSAFKFFAIANAIACGFCLLSVCFVFISTRQLALGNRQRNFFFFVHDLLMMGLVLSG 120
Query: 121 CAAATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISAT-TQ 180
CAAATAIG+VG+YGN+HTGWSPICD FG FCNR+ SIA+SY AVLCL ILTIISA T+
Sbjct: 121 CAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRIAISIAISYFAVLCLLILTIISANPTK 180
BLAST of Lag0033567 vs. NCBI nr
Match:
XP_023516133.1 (CASP-like protein 1F1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 245.0 bits (624), Expect = 5.1e-61
Identity = 132/183 (72.13%), Postives = 149/183 (81.42%), Query Frame = 0
Query: 3 DIELDAKSQQPHSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYSYS 62
++EL+AKSQ PH+ L SSQIILRALVI STLAATW + TAKQSV+IFG DARYSYS
Sbjct: 6 NVELEAKSQGPHA-NLYLSSQIILRALVISSTLAATWTLTTAKQSVVIFGFTLDARYSYS 65
Query: 63 PAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTN----YIFFIHDLVMMVLVVGG 122
A+KFFALANAIACGF LLS C VFISSRQL L N Q N + FF+HDL+MM LVV G
Sbjct: 66 SAFKFFALANAIACGFCLLSLCFVFISSRQLALGNRQRNFSFFFFFFVHDLLMMGLVVSG 125
Query: 123 CAAATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISA-TTQ 181
CAAATAIG+VG+YGN+HTGWSPICD F FCNR+T SIA+SY AVLCL ILTIISA T+
Sbjct: 126 CAAATAIGFVGRYGNTHTGWSPICDQFAKFCNRITISIAISYFAVLCLLILTIISAYPTK 185
BLAST of Lag0033567 vs. NCBI nr
Match:
XP_022134667.1 (CASP-like protein 1F2 [Momordica charantia] >XP_022134668.1 CASP-like protein 1F2 [Momordica charantia])
HSP 1 Score: 242.7 bits (618), Expect = 2.5e-60
Identity = 126/175 (72.00%), Postives = 144/175 (82.29%), Query Frame = 0
Query: 1 MADIELDAKSQQPHSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYS 60
MADIEL++ S L SQ ILR LVI STLAA W++LTAKQSV++FGIP DARYS
Sbjct: 1 MADIELESNKSNT-SHNLHLCSQTILRGLVIASTLAAAWLMLTAKQSVIVFGIPLDARYS 60
Query: 61 YSPAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGCA 120
YSPA+KFFALANAIACGF LS L+F+ S +L +NQ NYI F+HDL+MMVLV GCA
Sbjct: 61 YSPAFKFFALANAIACGFCFLSVLLLFVLSHRL---HNQPNYILFLHDLLMMVLVASGCA 120
Query: 121 AATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISAT 176
A+TAIGYVGKYGNSHTGWSPICD+FG FCNRVTTS+A+SYLAV+CL ILTIISAT
Sbjct: 121 ASTAIGYVGKYGNSHTGWSPICDHFGKFCNRVTTSVAISYLAVICLLILTIISAT 171
BLAST of Lag0033567 vs. NCBI nr
Match:
XP_022987446.1 (CASP-like protein 1F1 [Cucurbita maxima])
HSP 1 Score: 242.3 bits (617), Expect = 3.3e-60
Identity = 124/172 (72.09%), Postives = 145/172 (84.30%), Query Frame = 0
Query: 3 DIELDAKSQQPHSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYSYS 62
++EL+AKSQ H+ KL SSQIILRA VI STLAATW ++TAKQSV+IFG DARYSYS
Sbjct: 5 NVELEAKSQGLHA-KLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYS 64
Query: 63 PAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGCAAA 122
A+KFFA+ANA+ACGF LLS C VFIS+RQL L + Q N+ FF+HDL+MM LV+ GCAAA
Sbjct: 65 SAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAA 124
Query: 123 TAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISA 175
TAIG+VG+YGN+HTGWSPICD FG FCNR+T SIA+SY AVLCL ILTIISA
Sbjct: 125 TAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISA 175
BLAST of Lag0033567 vs. NCBI nr
Match:
XP_038880088.1 (CASP-like protein 1F2 [Benincasa hispida])
HSP 1 Score: 212.2 bits (539), Expect = 3.7e-51
Identity = 116/180 (64.44%), Postives = 138/180 (76.67%), Query Frame = 0
Query: 4 IELDAKSQQPH---SQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYS 63
+EL+ KS H S L SQI LRALVI STLAAT +I++AKQSVLI GIPFDARY+
Sbjct: 53 MELEPKSSNSHFSSSTNLHLCSQIFLRALVISSTLAATLLIISAKQSVLILGIPFDARYT 112
Query: 64 YSPAYKFFALANAIACGFTLLSACLVFISSRQLRLRN------NQTNYIFFIHDLVMMVL 123
YS A+ FFALANAI+C F+ LSACLVFIS +L N N+ YIFF+HDL+MM L
Sbjct: 113 YSSAFVFFALANAISCAFSFLSACLVFISIPRLASGNNNHGTRNRNYYIFFLHDLLMMGL 172
Query: 124 VVGGCAAATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISA 175
++ GC+AATAIG VGKYGN HTGWSPICD+F FC+RVT S+A+SY +VLCL ILTI+SA
Sbjct: 173 LLAGCSAATAIGCVGKYGNDHTGWSPICDHFPKFCDRVTASLAISYFSVLCLLILTILSA 232
BLAST of Lag0033567 vs. ExPASy Swiss-Prot
Match:
B9I3X5 (CASP-like protein 1F2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_823430 PE=3 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 4.0e-40
Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = 0
Query: 1 MADIELDAKSQQP-HSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARY 60
MADIE + QP +Q + +QI LR +VI ++ A+TW++LT KQ++ I G DA Y
Sbjct: 1 MADIETKSSQNQPLKTQNIFIGAQIFLRIVVIAASFASTWLMLTNKQTIDIGGFVLDANY 60
Query: 61 SYSPAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGC 120
SYSP +KF + AN + F+ +S + + R R N +I F+HDL +M LV+GGC
Sbjct: 61 SYSPEFKFLSYANIVVGAFSFVSLLFLVLVGR--RSSNPTYYFILFLHDLALMSLVLGGC 120
Query: 121 AAATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISAT 176
AAAT IG +GKYGNSHTGW ICD+FG FC R TTS+A SY +++CL ILTI SA+
Sbjct: 121 AAATVIGSLGKYGNSHTGWMQICDHFGKFCKRATTSVAFSYFSLVCLLILTITSAS 174
BLAST of Lag0033567 vs. ExPASy Swiss-Prot
Match:
B9IFI5 (CASP-like protein 1F1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_824792 PE=2 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 3.4e-39
Identity = 86/167 (51.50%), Postives = 116/167 (69.46%), Query Frame = 0
Query: 10 SQQPHSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYSYSPAYKFFA 69
+Q +QKL QI R + I +++A++W+++T+KQ + I GI DARYSYSP +KF A
Sbjct: 11 NQPLKTQKLFIGVQIFFRIVAIAASVASSWLMITSKQVIDIGGIVLDARYSYSPEFKFLA 70
Query: 70 LANAIACGFTLLSACLVFISSRQLRLRNNQTNYIF-FIHDLVMMVLVVGGCAAATAIGYV 129
N + F+LLS + + RQ +N +Y F F+HDL MM LVVGGCAAAT +G++
Sbjct: 71 FTNIVVGCFSLLSLLFLVLVVRQ---GSNPNHYFFLFLHDLAMMSLVVGGCAAATTVGFL 130
Query: 130 GKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISAT 176
GK+GNSHTGW ICDNFG FCNR TS+ +SYL ++CL ILTI SA+
Sbjct: 131 GKHGNSHTGWMQICDNFGKFCNRAQTSVTISYLNLICLSILTITSAS 174
BLAST of Lag0033567 vs. ExPASy Swiss-Prot
Match:
B9RA90 (CASP-like protein 1F1 OS=Ricinus communis OX=3988 GN=RCOM_1504680 PE=2 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 8.3e-38
Identity = 86/167 (51.50%), Postives = 118/167 (70.66%), Query Frame = 0
Query: 15 SQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYSYSPAYKFFALANAI 74
SQKL +QI LR + I +TLAATWI++T KQS+ A+Y+YS A+KFF LAN I
Sbjct: 14 SQKLFIGAQICLRIVTIGATLAATWIMVTDKQSITFGDFVMVAKYNYSSAFKFFVLANVI 73
Query: 75 ACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGCAAATAIGYVGKYGNS 134
AC +++S L+F+ + N ++ F+HDL+MM LV+ GC+AATAIG++GKYGN+
Sbjct: 74 ACACSVVS--LLFLCALGRYSSNPGHVFLLFLHDLLMMSLVLAGCSAATAIGFLGKYGNT 133
Query: 135 HTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISA--TTQVH 180
+GW PICD FG FCNR T S+ LSYL+++CL ILT+ SA + Q+H
Sbjct: 134 KSGWMPICDQFGQFCNRGTISMMLSYLSMVCLLILTVTSANKSRQIH 178
BLAST of Lag0033567 vs. ExPASy Swiss-Prot
Match:
A7PHN8 (CASP-like protein 1F1 OS=Vitis vinifera OX=29760 GN=VIT_17s0000g00560 PE=2 SV=2)
HSP 1 Score: 153.3 bits (386), Expect = 2.7e-36
Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = 0
Query: 1 MADIELDAKSQQP-HSQKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARY 60
MA IE + P + KL + I LR L + +TL A W+++T+KQ+V ++GI +A+Y
Sbjct: 26 MAGIEAKFQQNPPLGTHKLFLGAHICLRILTVTATLTAAWMMITSKQTVEVYGIQVEAKY 85
Query: 61 SYSPAYKFFALANAIACGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGC 120
SYS A+KFF+ ANAIACG ++L+ F S R + F+HDL MM LV+ GC
Sbjct: 86 SYSSAFKFFSYANAIACGCSVLTLFPAF--SLFYRGSTPMKFFFLFLHDLCMMSLVLAGC 145
Query: 121 AAATAIGYVGKYGNSHTGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISA 175
AAATAIGYVG+YGN+H GW ICD F +CNR+ S+ SYLA + + +LTI+SA
Sbjct: 146 AAATAIGYVGRYGNNHAGWMAICDQFDEYCNRIRLSLMFSYLAFVFILMLTIMSA 198
BLAST of Lag0033567 vs. ExPASy Swiss-Prot
Match:
B9RH17 (CASP-like protein 1F2 OS=Ricinus communis OX=3988 GN=RCOM_1446020 PE=2 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 73/168 (43.45%), Postives = 110/168 (65.48%), Query Frame = 0
Query: 16 QKLRFSSQIILRALVICSTLAATWIILTAKQSVLIFGIPFDARYSYSPAYKFFALANAIA 75
+++ F +Q+I R L I +A+ ++T+ Q+V++FG+ ARYSYS A++F ANA+
Sbjct: 28 KRIFFMAQVIFRILAIAFAVASISAMVTSDQNVIVFGMDTAARYSYSSAFRFLVGANAVV 87
Query: 76 CGFTLLSACLVFISSRQLRLRNNQTNYIFFIHDLVMMVLVVGGCAAATAIGYVGKYGNSH 135
CGF++LS V + SR+ + NY F+HD+VMMV++V GC+AATAIGYVG+YG
Sbjct: 88 CGFSVLSLIFVCLMSRRSE-AILEKNYYLFLHDMVMMVMMVSGCSAATAIGYVGRYGEKE 147
Query: 136 TGWSPICDNFGNFCNRVTTSIALSYLAVLCLFILTIISATTQVHRVPH 184
W+ +CD G FCN+ SI L+YLA+ C LT ++A H++ H
Sbjct: 148 ITWTAVCDFVGKFCNQALVSIVLAYLALFCYVALTTLAA----HKLNH 190
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
B9I3X5 | 4.0e-40 | 50.00 | CASP-like protein 1F2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_823430 PE=3 S... | [more] |
B9IFI5 | 3.4e-39 | 51.50 | CASP-like protein 1F1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_824792 PE=2 S... | [more] |
B9RA90 | 8.3e-38 | 51.50 | CASP-like protein 1F1 OS=Ricinus communis OX=3988 GN=RCOM_1504680 PE=2 SV=1 | [more] |
A7PHN8 | 2.7e-36 | 48.00 | CASP-like protein 1F1 OS=Vitis vinifera OX=29760 GN=VIT_17s0000g00560 PE=2 SV=2 | [more] |
B9RH17 | 2.3e-32 | 43.45 | CASP-like protein 1F2 OS=Ricinus communis OX=3988 GN=RCOM_1446020 PE=2 SV=1 | [more] |