Lag0033557 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033557
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 289828 .. 290340 (+)
RNA-Seq Expression	Lag0033557
Synteny	Lag0033557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAGTTGTGAGGAGTGGGAGGAAATTCGAGAGGTTCGACCAAGGACTCCATTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATTAGAACTGGAGAACCTTTACACATGGTAAGGCAGTTGTTTATTAACCTCGTATGAAAGTTGATGAAAGCCTTCACATTTCTCATCTTTTATCCCATCCCTTAATGATGATGGTAATGTGCTTCGTGCTTCCCCGTTTCCATGCTTATTACGGATTTGTTTGCTATTTTGTGGAAACTTCCTAGTTTCTACCAGTTATATGGTTGCATTTTCAACTACTGCAGTTTCCATTCAAAAAATTTTAAATGATTTTTCCCCCTAGATGAGTAGATGTATGTCAGTATGTGGCGTGGGGGCAGGGCAGATTGACCATGGGGGGATAATTGTTTGATGCAGGAGGATTTGAAGGACTGGACAATTGATGTGTTGTCAGATGCACTTACTCGGGCTGAAGAAAGTGTTAGACATGGTTCCACTTCCAAGTGA

mRNA sequence

ATGCTCAGTTGTGAGGAGTGGGAGGAAATTCGAGAGGTTCGACCAAGGACTCCATTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATTAGAACTGGAGAACCTTTACACATGGAGGATTTGAAGGACTGGACAATTGATGTGTTGTCAGATGCACTTACTCGGGCTGAAGAAAGTGTTAGACATGGTTCCACTTCCAAGTGA

Coding sequence (CDS)

ATGCTCAGTTGTGAGGAGTGGGAGGAAATTCGAGAGGTTCGACCAAGGACTCCATTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATTAGAACTGGAGAACCTTTACACATGGAGGATTTGAAGGACTGGACAATTGATGTGTTGTCAGATGCACTTACTCGGGCTGAAGAAAGTGTTAGACATGGTTCCACTTCCAAGTGA

Protein sequence

MLSCEEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGSTSK

Homology

[Close]

BLAST of Lag0033557 vs. NCBI nr
Match: XP_038879098.1 (uncharacterized protein LOC120071111 [Benincasa hispida] >XP_038879099.1 uncharacterized protein LOC120071111 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLSCEEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV 60
           MLS EEWEEIR+VRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV
Sbjct: 110 MLSREEWEEIRDVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV 169

Query: 61  RHGSTSK 68
           RHGSTSK
Sbjct: 170 RHGSTSK 176

[Close]

BLAST of Lag0033557 vs. NCBI nr
Match: XP_004138022.1 (uncharacterized protein LOC101207324 [Cucumis sativus] >KGN63439.1 hypothetical protein Csa_014018 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLSCEEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV 60
           MLS +EWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWT+DVLS+ALTRAEESV
Sbjct: 110 MLSRQEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVLSNALTRAEESV 169

Query: 61  RHGSTSK 68
           RHGSTSK
Sbjct: 170 RHGSTSK 176

[Close]

BLAST of Lag0033557 vs. NCBI nr
Match: XP_008464374.1 (PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo] >KAA0057732.1 uncharacterized protein E6C27_scaffold274G00130 [Cucumis melo var. makuwa] >TYJ98418.1 uncharacterized protein E5676_scaffold350G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MLSCEEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV 60
           MLS EEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWT+DV+S+ALTRAEESV
Sbjct: 110 MLSREEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVVSNALTRAEESV 169

Query: 61  RHGSTSK 68
           RHGSTSK
Sbjct: 170 RHGSTSK 176

[Close]

BLAST of Lag0033557 vs. NCBI nr
Match: XP_022134988.1 (uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134990.1 uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134991.1 uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134992.1 uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134993.1 uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134994.1 uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134995.1 uncharacterized protein LOC111007103 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 5.2e-27
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MLSCEEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV 60
           MLS EEWEEIR+VRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVL+DAL RAEESV
Sbjct: 110 MLSREEWEEIRDVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLTDALARAEESV 169

Query: 61  RHGSTSK 68
           RHGSTSK
Sbjct: 170 RHGSTSK 176

[Close]

BLAST of Lag0033557 vs. NCBI nr
Match: XP_022987156.1 (uncharacterized protein LOC111484792 isoform X1 [Cucurbita maxima])

HSP 1 Score: 126.3 bits (316), Expect = 9.7e-26
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1   MLSCEEWEEIREVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESV 60
           MLS EEWEE+REVRPRTPFESKLARPNARIRTGEPLH EDLKDWT+DVLS+ALTRAEESV
Sbjct: 175 MLSREEWEEMREVRPRTPFESKLARPNARIRTGEPLHREDLKDWTVDVLSNALTRAEESV 234

Query: 61  RHGSTSK 68
           RH STSK
Sbjct: 235 RHDSTSK 241

The following BLAST results are available for this feature:

BLAST of Lag0033557 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879098.1	6.1e-28	97.01	uncharacterized protein LOC120071111 [Benincasa hispida] >XP_038879099.1 unchara...	[more]
XP_004138022.1	3.0e-27	94.03	uncharacterized protein LOC101207324 [Cucumis sativus] >KGN63439.1 hypothetical ...	[more]
XP_008464374.1	3.0e-27	94.03	PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_022134988.1	5.2e-27	94.03	uncharacterized protein LOC111007103 [Momordica charantia] >XP_022134990.1 uncha...	[more]
XP_022987156.1	9.7e-26	91.04	uncharacterized protein LOC111484792 isoform X1 [Cucurbita maxima]	[more]

BLAST of Lag0033557 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36008	OS09G0478400 PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033557.1	Lag0033557.1	mRNA