Lag0033368 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033368
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 43072303 .. 43072722 (+)
RNA-Seq ExpressionLag0033368
SyntenyLag0033368
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGAACTCCAAGTCCTCCAAGAGGAATCCCATGTGCGAGAAGCTTCTCAGGGCTCTTGGCGTGTATCCTAAAATCGTCAAATTGGGTCGCCAGGAAGAACCCAAACCGGTTGCTCTGGCTCCCTCCTACTCTCACTCTGTGCAAATTCACGTTCACGAAGTGGAGGAGAAAAGACAAAAGCCGAACAAGTTAGTAGCAGGTGAAGGCAAAAAATCAGGAGAAGATGTGAACGATGTGTTTAGCGATTACATCAGCCGGGCTAAACGTAGGCTGGGAAGCATTTCAAGCAAGCGACATGATTCGAGTAGCAGCAGGGGAAAGGAGAACGTCAAAGAAGATCACCGCTTTTCAGACTACATCATTCGAGCTCGGAATAAGCTCAGGGCTACCTCCTCCAGTGTAAAGCGAGAATAG

mRNA sequence

ATGGGAAGGAACTCCAAGTCCTCCAAGAGGAATCCCATGTGCGAGAAGCTTCTCAGGGCTCTTGGCGTGTATCCTAAAATCGTCAAATTGGGTCGCCAGGAAGAACCCAAACCGGTTGCTCTGGCTCCCTCCTACTCTCACTCTGTGCAAATTCACGTTCACGAAGTGGAGGAGAAAAGACAAAAGCCGAACAAGTTAGTAGCAGGTGAAGGCAAAAAATCAGGAGAAGATGTGAACGATGTGTTTAGCGATTACATCAGCCGGGCTAAACGTAGGCTGGGAAGCATTTCAAGCAAGCGACATGATTCGAGTAGCAGCAGGGGAAAGGAGAACGTCAAAGAAGATCACCGCTTTTCAGACTACATCATTCGAGCTCGGAATAAGCTCAGGGCTACCTCCTCCAGTGTAAAGCGAGAATAG

Coding sequence (CDS)

ATGGGAAGGAACTCCAAGTCCTCCAAGAGGAATCCCATGTGCGAGAAGCTTCTCAGGGCTCTTGGCGTGTATCCTAAAATCGTCAAATTGGGTCGCCAGGAAGAACCCAAACCGGTTGCTCTGGCTCCCTCCTACTCTCACTCTGTGCAAATTCACGTTCACGAAGTGGAGGAGAAAAGACAAAAGCCGAACAAGTTAGTAGCAGGTGAAGGCAAAAAATCAGGAGAAGATGTGAACGATGTGTTTAGCGATTACATCAGCCGGGCTAAACGTAGGCTGGGAAGCATTTCAAGCAAGCGACATGATTCGAGTAGCAGCAGGGGAAAGGAGAACGTCAAAGAAGATCACCGCTTTTCAGACTACATCATTCGAGCTCGGAATAAGCTCAGGGCTACCTCCTCCAGTGTAAAGCGAGAATAG

Protein sequence

MGRNSKSSKRNPMCEKLLRALGVYPKIVKLGRQEEPKPVALAPSYSHSVQIHVHEVEEKRQKPNKLVAGEGKKSGEDVNDVFSDYISRAKRRLGSISSKRHDSSSSRGKENVKEDHRFSDYIIRARNKLRATSSSVKRE
Homology
BLAST of Lag0033368 vs. NCBI nr
Match: KAG6606435.1 (hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 7.6e-41
Identity = 106/143 (74.13%), Postives = 116/143 (81.12%), Query Frame = 0

Query: 1   MGRNSKSSKRNPMCEKLLRALGVYPKIVKLG----RQEEPKPVALAPSYSHSVQIHVHEV 60
           MGRNSKSSKRNP+CEKLL+ALG+YP+I+K G    RQEEPKP ALA SY  S+QI   EV
Sbjct: 1   MGRNSKSSKRNPVCEKLLKALGLYPRILKFGPPPNRQEEPKPAALAHSY--SLQIQDDEV 60

Query: 61  EEKRQKPNKLVAGEGKKSGEDVNDVFSDYISRAKRRLGSISSKRHDSSSSRGKENVKEDH 120
            EK QKP+           EDVNDVFSDYISRAKRRLGSISSKRHD  SSRGKENVKED+
Sbjct: 61  -EKEQKPS-----------EDVNDVFSDYISRAKRRLGSISSKRHD-WSSRGKENVKEDN 120

Query: 121 RFSDYIIRARNKLRATSSSVKRE 140
           RFSDYI+RARNKL+ATSSSVKRE
Sbjct: 121 RFSDYIVRARNKLKATSSSVKRE 128

BLAST of Lag0033368 vs. NCBI nr
Match: KAG6571440.1 (hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-23
Identity = 73/138 (52.90%), Postives = 93/138 (67.39%), Query Frame = 0

Query: 1   MGRNSKSSKRNPMCEKLLRALGVYPKIVKLGRQEEPKPVALAPSYSHSVQIHVHEVEEKR 60
           MG+N+KSSKR+ +CE+ L+ALG+ P      R EEP    LAP      +++++   +  
Sbjct: 1   MGKNTKSSKRSSVCERFLKALGMCPSPT---RHEEP----LAPEMDKKQRLNINGAPQME 60

Query: 61  QKPNKLVAGEGKKSGEDVNDVFSDYISRAKRRLGSISSKRHDSSSSRGKENVKEDHRFSD 120
                      KK   + ND FSDYI+RAKRRLGSISSKRHD  SS+GKEN+KED RF+D
Sbjct: 61  -----------KKQKLEPNDAFSDYINRAKRRLGSISSKRHD-PSSKGKENLKEDRRFTD 119

Query: 121 YIIRARNKLRATSSSVKR 139
           YIIRARN+LRATSS+V R
Sbjct: 121 YIIRARNRLRATSSTVGR 119

BLAST of Lag0033368 vs. NCBI nr
Match: KAA0057288.1 (hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK13444.1 hypothetical protein E5676_scaffold496G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-19
Identity = 75/149 (50.34%), Postives = 91/149 (61.07%), Query Frame = 0

Query: 1   MGRNSKSSKRN-PMCEKLLRALGV--YPKIVKLGRQEEPKPVALAPSYSHSVQIHVH--- 60
           MGRN KSS  N P CEKLL+A G+   PKI KL               + S  I+VH   
Sbjct: 1   MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHEQQHQQQNNSSQHIYVHHEP 60

Query: 61  ---EVEEKRQKPNKLVAGEGKKSGEDVNDVFSDYISRAKRRLGSISSKRH--DSSSSRGK 120
              E++    K NK   G+     + VNDVFS+YI+RAKRRLG+I+SK+H  + SS +GK
Sbjct: 61  AIMEIKTHSSKSNKYGGGD----EDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGKGK 120

Query: 121 EN--VKEDHRFSDYIIRARNKLRATSSSV 137
           EN    ED RFSDYI RAR+KLRATSSSV
Sbjct: 121 ENSLKAEDRRFSDYIARARDKLRATSSSV 145

BLAST of Lag0033368 vs. NCBI nr
Match: KGN47879.1 (hypothetical protein Csa_004306 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-16
Identity = 75/148 (50.68%), Postives = 89/148 (60.14%), Query Frame = 0

Query: 1   MGRNSKSSKRN-PMCEKLLRALGV--YPKIVKL----GRQEEPKPVALAPSYSHSVQIHV 60
           MG+NSKSS  N P CEKLL+A G+   PKI KL       E         S  H    H 
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 61  HEVEEK--RQKPNKLVAGEGKKSGEDVNDVFSDYISRAKRRLGSISSKRH-DSSSSRGKE 120
             V EK    K NK   G+     + VN  FS+YI+RAKRRL +++SK+H + SSSRGKE
Sbjct: 61  PAVMEKTHSSKNNKYAGGD----EDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKE 120

Query: 121 N--VKEDHRFSDYIIRARNKLRATSSSV 137
           N    ED RFSDYI+RARNKLR+TSSSV
Sbjct: 121 NNLKAEDRRFSDYIVRARNKLRSTSSSV 144

BLAST of Lag0033368 vs. NCBI nr
Match: XP_021803981.1 (uncharacterized protein LOC110748293 [Prunus avium])

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-06
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 0

Query: 45  YSHSVQIHVHEVEEKRQKPNKLVAGEGKK-SGEDVNDVFSDYISRAKRRLGSISSKR--H 104
           ++H+  + VHE E  R      V  EGKK  G D+ND FS+YI++AK ++ ++SS +   
Sbjct: 186 HNHNAAVKVHEAEAPR------VKNEGKKPGGLDINDTFSEYINQAKIKIRTMSSNKISD 245

Query: 105 DSSSSRGKENVKEDHRFSDYIIRARNKLRATSSSV 137
           D   ++ KE+VK DH FSDYI RA+NK ++T S++
Sbjct: 246 DDDDAKKKESVK-DH-FSDYIHRAKNKFKSTPSNL 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6606435.17.6e-4174.13hypothetical protein SDJN03_03752, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571440.14.2e-2352.90hypothetical protein SDJN03_28168, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0057288.16.3e-1950.34hypothetical protein E6C27_scaffold280G001290 [Cucumis melo var. makuwa] >TYK134... [more]
KGN47879.11.0e-1650.68hypothetical protein Csa_004306 [Cucumis sativus][more]
XP_021803981.16.1e-0643.16uncharacterized protein LOC110748293 [Prunus avium][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..117
NoneNo IPR availablePANTHERPTHR36746:SF3BNAC04G51760D PROTEINcoord: 46..138
NoneNo IPR availablePANTHERPTHR36746BNAC04G51760D PROTEINcoord: 46..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033368.1Lag0033368.1mRNA