Lag0033356 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033356
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutathione peroxidase
Location	chr11: 42974354 .. 42975683 (-)
RNA-Seq Expression	Lag0033356
Synteny	Lag0033356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCTACGATGAGCTTGGTTTCTTAGCTTACACACCAAACTTTCTGTGGTTACAACCCCTGTTGGTCTGCAGGGGGTGATGCGTTAATAGTATATCTATATAGTTCCTCATTTATAATTGTCTTTGCACGCACTATCACATGTGGTTATTACCCCTGCTGTCATGTGCTAGTTAGATATCCCCCCCCCCCCCCCTTTTGCCATCTTTTCCTCTGATATGTTTCCCTTCTACCTCTACCGAGCTTATTTTCTCATTACAAGAAAGCATTTCATTGTCCTTCATCCTCCTCATTCACCACTCTCAGACAACCAGTGCACGGAGTTTATTTAAATCCAGTCTCACTTATTAAAGACAGCAGCCTTCTATTTTTTCTACTAGGTCTTTTCCTTCCCCATTATGCTCTATTTCATAAACAATCTCAATCTCCGTACGTTGTAAGCATTCATAATAAGTTAATGCCGTTACAAAAATCAAAAGCTAAAAAAGGAGAACAGAAGTATTTTGAAAACGAGCACTTAATATGCTAGCTCTTACAACTTTTTGTCAGATATATGATTGATAGGCTATCTTTAGGACCAGAAATCGTACTGAAATTTTACACTCTTGCTTGGTTAATGTATTTTTGAAATTAACCGATATCTTGTGATTCAGAGATAGCCCATTTTTAGGGCAAAACAGAGGCACACATTATTCTACGCTACAGTCTCATATTGTTGTATTACTGCAATAATTGGCTATGGTTGTCTCATGAGATGTCAGATTTATTTTCTTAAGCTCTCTACCACTATGGATATTGAATAATTATGTACGGCTTGAAGAAACTCAGCCTGTATGTGCCTACCACATTCATTTATCAATGAAAGCTTGACAAAAAAAAAAAAAAAAAAAAAAAACTCAGCCTGTGCCCGTGGTGCAACAAGCTGAACTCCATGTAATATCGTTGGTCACCTTCATCCAAATGAAAACGATTGAATTTACACTCCACTCTTTAAACTATTGATTCTGATTTTGAAACGACACATCTTTTGTTTCCAGGTAAGTGTGAATGGCCCTGATACGGCACCCGTTTATAAGTTCCTTAAAGGTAGTAAAACTGGATTTTTGGGGTCAAGAATAAAGTGGAATTTTACCAAGTTCTTAGTTGACAAAGAAGGTCGTGCCATCAAACGCTATGGCACAACCACTACTCCCCTGGCAATTGAGGTATTTTCTCAATAGCTTTTTAACATCTATACCAATCTGTTTATCAGTGAAATTGAGCTCGTTGCATGTCGTGTTTCTTTGTTATGCAGGCTGATATCGAGGAAGCACTGGGAGAGGTCTAA

mRNA sequence

ATGAAACTCTACGATGAGCTTGGTTTCTTAGCTTACACACCAAACTTTCTGTGGTTACAACCCCTGTTGGTAAGTGTGAATGGCCCTGATACGGCACCCGTTTATAAGTTCCTTAAAGGTAGTAAAACTGGATTTTTGGGGTCAAGAATAAAGTGGAATTTTACCAAGTTCTTAGTTGACAAAGAAGGTCGTGCCATCAAACGCTATGGCACAACCACTACTCCCCTGGCAATTGAGGCTGATATCGAGGAAGCACTGGGAGAGGTCTAA

Coding sequence (CDS)

ATGAAACTCTACGATGAGCTTGGTTTCTTAGCTTACACACCAAACTTTCTGTGGTTACAACCCCTGTTGGTAAGTGTGAATGGCCCTGATACGGCACCCGTTTATAAGTTCCTTAAAGGTAGTAAAACTGGATTTTTGGGGTCAAGAATAAAGTGGAATTTTACCAAGTTCTTAGTTGACAAAGAAGGTCGTGCCATCAAACGCTATGGCACAACCACTACTCCCCTGGCAATTGAGGCTGATATCGAGGAAGCACTGGGAGAGGTCTAA

Protein sequence

MKLYDELGFLAYTPNFLWLQPLLVSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIEEALGEV

Homology

[Close]

BLAST of Lag0033356 vs. NCBI nr
Match: XP_022155674.1 (probable glutathione peroxidase 5 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           VSVNGPDTAPVYKFLK SKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADI+
Sbjct: 105 VSVNGPDTAPVYKFLKASKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIK 164

Query: 84  EALGEV 90
           E LGEV
Sbjct: 165 EVLGEV 170

[Close]

BLAST of Lag0033356 vs. NCBI nr
Match: XP_023533991.1 (probable glutathione peroxidase 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 9.0e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           VSVNGPDTAPVYKFLK SKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPL+IEADI+
Sbjct: 105 VSVNGPDTAPVYKFLKASKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLSIEADIK 164

Query: 84  EALGE 89
           EALGE
Sbjct: 165 EALGE 169

[Close]

BLAST of Lag0033356 vs. NCBI nr
Match: XP_022995871.1 (probable glutathione peroxidase 5 [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 9.0e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           VSVNGPDTAPVYKFLK SKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPL+IEADI+
Sbjct: 105 VSVNGPDTAPVYKFLKASKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLSIEADIK 164

Query: 84  EALGE 89
           EALGE
Sbjct: 165 EALGE 169

[Close]

BLAST of Lag0033356 vs. NCBI nr
Match: XP_022931092.1 (probable glutathione peroxidase 5 [Cucurbita moschata] >KAG6606430.1 putative glutathione peroxidase 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036371.1 putative glutathione peroxidase 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 9.0e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           VSVNGPDTAPVYKFLK SKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPL+IEADI+
Sbjct: 105 VSVNGPDTAPVYKFLKASKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLSIEADIK 164

Query: 84  EALGE 89
           EALGE
Sbjct: 165 EALGE 169

[Close]

BLAST of Lag0033356 vs. NCBI nr
Match: XP_008449386.1 (PREDICTED: probable glutathione peroxidase 5 [Cucumis melo] >KAA0057378.1 putative glutathione peroxidase 5 [Cucumis melo var. makuwa] >TYK30067.1 putative glutathione peroxidase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           V+VNGPDTAPVYKFLK SKTGFLG+RIKWNFTKFLVDKEG AIKRYGTTTTPLAIEADI+
Sbjct: 105 VNVNGPDTAPVYKFLKASKTGFLGTRIKWNFTKFLVDKEGHAIKRYGTTTTPLAIEADIK 164

Query: 84  EALGEV 90
           EALGEV
Sbjct: 165 EALGEV 170

[Close]

BLAST of Lag0033356 vs. ExPASy Swiss-Prot
Match: Q9LYB4 (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana OX=3702 GN=GPX5 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           V VNG + APVYKFLK  K  FLGSRIKWNFTKFLV K+G+ I RYGTT +PL+I+ DIE
Sbjct: 107 VRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIE 166

Query: 84  EALGE 89
           +AL +
Sbjct: 167 KALAQ 171

[Close]

BLAST of Lag0033356 vs. ExPASy Swiss-Prot
Match: Q8L910 (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana OX=3702 GN=GPX4 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-18
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           V VNG + AP+YKFLK SK  FLGSRIKWNFTKFLV K+G  I RYGT  TPL+IE DI+
Sbjct: 105 VRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIK 164

Query: 84  EAL 87
           +AL
Sbjct: 165 KAL 167

[Close]

BLAST of Lag0033356 vs. ExPASy Swiss-Prot
Match: O23968 (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus OX=4232 GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-17
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           V+VNG +  P+YKFLK SK GFLG  IKWNFTKFLVD+EG+ + RY  TT+PL+IE DI+
Sbjct: 115 VNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIK 174

Query: 84  EAL 87
           + L
Sbjct: 175 KLL 177

[Close]

BLAST of Lag0033356 vs. ExPASy Swiss-Prot
Match: O49069 (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           V VNG + AP+YKFLK SK GF G  IKWNF+KFLVDKEG  + RY  TTTP ++E DI+
Sbjct: 105 VDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIK 164

Query: 84  EALG 88
           + LG
Sbjct: 165 KLLG 168

[Close]

BLAST of Lag0033356 vs. ExPASy Swiss-Prot
Match: P30708 (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 24  VSVNGPDTAPVYKFLKGSKTGFLGSRIKWNFTKFLVDKEGRAIKRYGTTTTPLAIEADIE 83
           V VNG + AP+YKFLK SK GF G  IKWNF+KFLVDKEG  + RY  TTTP ++E DI+
Sbjct: 104 VDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIK 163

Query: 84  EALG 88
           + LG
Sbjct: 164 KLLG 167

The following BLAST results are available for this feature:

BLAST of Lag0033356 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155674.1	4.0e-27	95.45	probable glutathione peroxidase 5 [Momordica charantia]	[more]
XP_023533991.1	9.0e-27	95.38	probable glutathione peroxidase 5 [Cucurbita pepo subsp. pepo]	[more]
XP_022995871.1	9.0e-27	95.38	probable glutathione peroxidase 5 [Cucurbita maxima]	[more]
XP_022931092.1	9.0e-27	95.38	probable glutathione peroxidase 5 [Cucurbita moschata] >KAG6606430.1 putative gl...	[more]
XP_008449386.1	2.6e-26	92.42	PREDICTED: probable glutathione peroxidase 5 [Cucumis melo] >KAA0057378.1 putati...	[more]

BLAST of Lag0033356 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYB4	2.5e-19	67.69	Probable glutathione peroxidase 5 OS=Arabidopsis thaliana OX=3702 GN=GPX5 PE=1 S...	[more]
Q8L910	1.6e-18	69.84	Probable glutathione peroxidase 4 OS=Arabidopsis thaliana OX=3702 GN=GPX4 PE=2 S...	[more]
O23968	1.3e-17	63.49	Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus ...	[more]
O49069	1.8e-17	62.50	Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum...	[more]
P30708	1.8e-17	62.50	Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestr...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 7..88 e-value: 9.5E-24 score: 85.6
None	No IPR available	PANTHER	PTHR11592:SF106	GLUTATHIONE PEROXIDASE	coord: 24..88
IPR000889	Glutathione peroxidase	PANTHER	PTHR11592	GLUTATHIONE PEROXIDASE	coord: 24..88
IPR000889	Glutathione peroxidase	PROSITE	PS51355	GLUTATHIONE_PEROXID_3	coord: 1..89 score: 25.768589
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 24..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033356.1	Lag0033356.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004602	glutathione peroxidase activity