Lag0033312 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033312
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr11: 42686865 .. 42687969 (+)
RNA-Seq Expression	Lag0033312
Synteny	Lag0033312

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTAAGCCTCATTTCATATATGAACAGCTTGATACAGAGATGTATTTATACACATCTGAGAGACTAAGGTCTAACGGTTAGACACGTGACCTCCATGCTTCAGCCAACTGAATAAGATAATGGATTAAACACCCTGACAACCACCTCAGCTTATTTGACAGTTTGACTCTGAATATAAGTATAAATATTTCAACACAAATTCTAGATGGGATATAAAGAATGGTCGTAGTGTCTCTTTTTGGCATGACAGTTGGTCTGAGGAGGGTCCTCTATCTCAAGCAGCCAACCACTTTTATCTTCTTTCTGCCAAGAAAGATGCCTTAGTCTCTGAAGCTTGGTCCCCCACTTCTCAGAATTGGGACCCCTTCCCTCGCAGGCCCTTACTGGATAGAGAACAGCAAGCATGGTCCGATTTCTCTCATCGCCTCCAAAAGCCCGCCCACAATGGTGGATAAAGCTGATTCCCTAATAAGGTGGTTATTAGACCTAGACGGAAGTTTTTGTGTCTCCACTACTCGTGCAGCCTTAAGGTGCCAAATTCATCCTCTCTCTCACAGCATTAAGAAAGAATCTCTCTGCAGCCTTAATTTGGAAAGCTAAATTGCCAAAAAAATGCAAGTTCCTTTTATGGACAATTATGCATAGAAAGATGATCAATACAGCTGATGTCCTTCAGAGGAAATTTAAATCTTTCATTCTGAATCCAAACAGATGCTCAATGTGCCTTAATGACTTGGAAACAATTGATCACCTTTTTATCCACTGCAGCTTTGCTAGCTCTGTTTGGTCTCTCTTGATGGATGGCACCAACCTTCACGACCCTCTTCATCAGAAAGTTGATCTTCTATGTGAAGAAGCCTTTGCTGTTAACTCCAAATCTCAAAGGAGCATTTTGTGCATTAATATCTTTGCTGCTCCTGCTATTATATGGGTTCTTTGGTCTGAGCGTAATTCTCGTATTTTCCGGGGCAATGAGCGATCTCTCCTATCCATATGGGATGACATTCTGGCTATGGCGGCCTTATGGGCGACCACTTCTAAAGCATTCTCTAACTATTGTGGTTCCCATATCGCCTTGAATTGGAAATCTTTCATGTAA

mRNA sequence

ATGAGTTTTAAGCCTCATTTCATATATGAACAGCTTGATACAGAGATGTATTTATACACATCTGAGAGACTAAGAATTGGGACCCCTTCCCTCGCAGGCCCTTACTGGATAGAGAACAGCAAGCATGGTCCGATTTCTCTCATCGCCTCCAAAAGCCCGCCCACAATGGTGGATAAAGCTGATTCCCTAATAAGGTGGTTATTAGACCTAGACGGAAGTTTTTGTGTCTCCACTACTCGTGCAGCCTTAAGCTTTGCTAGCTCTGTTTGGTCTCTCTTGATGGATGGCACCAACCTTCACGACCCTCTTCATCAGAAAGTTGATCTTCTATGTGAAGAAGCCTTTGCTGTTAACTCCAAATCTCAAAGGAGCATTTTGTGCATTAATATCTTTGCTGCTCCTGCTATTATATGGGTTCTTTGGTCTGAGCGTAATTCTCGTATTTTCCGGGGCAATGAGCGATCTCTCCTATCCATATGGGATGACATTCTGGCTATGGCGGCCTTATGGGCGACCACTTCTAAAGCATTCTCTAACTATTGTGGTTCCCATATCGCCTTGAATTGGAAATCTTTCATGTAA

Coding sequence (CDS)

ATGAGTTTTAAGCCTCATTTCATATATGAACAGCTTGATACAGAGATGTATTTATACACATCTGAGAGACTAAGAATTGGGACCCCTTCCCTCGCAGGCCCTTACTGGATAGAGAACAGCAAGCATGGTCCGATTTCTCTCATCGCCTCCAAAAGCCCGCCCACAATGGTGGATAAAGCTGATTCCCTAATAAGGTGGTTATTAGACCTAGACGGAAGTTTTTGTGTCTCCACTACTCGTGCAGCCTTAAGCTTTGCTAGCTCTGTTTGGTCTCTCTTGATGGATGGCACCAACCTTCACGACCCTCTTCATCAGAAAGTTGATCTTCTATGTGAAGAAGCCTTTGCTGTTAACTCCAAATCTCAAAGGAGCATTTTGTGCATTAATATCTTTGCTGCTCCTGCTATTATATGGGTTCTTTGGTCTGAGCGTAATTCTCGTATTTTCCGGGGCAATGAGCGATCTCTCCTATCCATATGGGATGACATTCTGGCTATGGCGGCCTTATGGGCGACCACTTCTAAAGCATTCTCTAACTATTGTGGTTCCCATATCGCCTTGAATTGGAAATCTTTCATGTAA

Protein sequence

MSFKPHFIYEQLDTEMYLYTSERLRIGTPSLAGPYWIENSKHGPISLIASKSPPTMVDKADSLIRWLLDLDGSFCVSTTRAALSFASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSFM

Homology

[Close]

BLAST of Lag0033312 vs. NCBI nr
Match: KAA0039966.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-14
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 89  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRI 148
           +W+LL D  N  + L +++  LC        K++++++  N +A  + +W +W ERN+RI
Sbjct: 721 IWTLLYDSVNTAEQLTKRMPNLCSRPSCWKQKTKKNVILYNTYA--SALWNIWLERNARI 780

Query: 149 FRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSF 193
           F G E+++  IW+DI A+A LW + S  F+NY  S IALN  +F
Sbjct: 781 FNGKEKTVAEIWEDIKALAGLWTSRSSLFTNYQASSIALNLNAF 822

[Close]

BLAST of Lag0033312 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-14
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 89  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRI 148
           +W+LL D  N  + L +++  LC        K++++++  N +A  + +W +W ERN+RI
Sbjct: 822 IWTLLYDSVNTAEQLTKRMPNLCSRPSCWKQKTKKNVILYNTYA--SALWNIWLERNARI 881

Query: 149 FRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSF 193
           F G E+++  IW+DI A+A LW + S  F+NY  S IALN  +F
Sbjct: 882 FNGKEKTVAEIWEDIKALAGLWTSRSSLFTNYQASSIALNLNAF 923

[Close]

BLAST of Lag0033312 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-11
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 85  FASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVL 144
           FA S+W    S L    N   P       LC    + N K++++++  N +A  + +W +
Sbjct: 194 FAKSIWRTISSHLSSNVNCLSPKE-----LCFSMCSWNQKTKKNVILFNTYA--SALWNI 253

Query: 145 WSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSF 193
           W ERN+RIF G E++   IW+DI A+A LW + S  FSNY  S IALN  +F
Sbjct: 254 WLERNARIFNGKEKTAAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 298

[Close]

BLAST of Lag0033312 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-11
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 86  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERN 145
           A S+W L+    N +       D LC    +   K++++++  N +A  + +W +W ERN
Sbjct: 440 AKSIWRLISSHLNSNVNCLSPKD-LCITMCSWKQKTKKNVILYNTYA--SALWNIWLERN 499

Query: 146 SRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSF 193
           +RIF G E+++  IW+DI A+A LW + S  FSNY  S IALN  +F
Sbjct: 500 ARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 543

[Close]

BLAST of Lag0033312 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 38/107 (35.51%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 86   ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERN 145
            A S+W  +    N +       + LC    +   K++++++  N +A  + +W +W ERN
Sbjct: 1016 AKSIWRTISSHLNSNVNCLSPKE-LCITMCSWKQKTKKNVILFNTYA--SALWNIWLERN 1075

Query: 146  SRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSF 193
            +RIF G E+++  IW+DI A+A LW + S  FSNY  S IALN  +F
Sbjct: 1076 ARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1119

The following BLAST results are available for this feature:

BLAST of Lag0033312 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039966.1	3.8e-14	37.50	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK24536.1	3.8e-14	37.50	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK02997.1	1.0e-11	38.39	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0040037.1	2.3e-11	37.38	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	2.0e-10	35.51	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0033312 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033312.1	Lag0033312.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity