Lag0033295 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033295
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHistone H2A
Locationchr11: 42537900 .. 42539155 (+)
RNA-Seq ExpressionLag0033295
SyntenyLag0033295
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGAAAAGGCGGGAAGGGGCTTTTGGCTGCAAAGACCCCAGCAGCTAACAAGGATAAGGATAAGGATAAGAAGAAGCCGATCTCTCGGTCCTCCCGTGCTGGTATACAGGTGCTCTTTTTTGTTCTTACCCTGAACTTTTTTTCCTCCGAATTTTGGAAGCAATGAATGGAACTAATTAAAGACTTTGATAACTTCGCCTGAGTATGTTTGATTTTGTATCCTCTGTTTGAAGACCTTGGAATTTTGAATGAGTTTCATATTTTATTCGTATGAGGAAATTACATCTGAGATAAGGTTTGTACAATTATGTTTAGGTGTCTGCATATTGTGATCTTTGTTCCTTGGGTTTTTATAGTGACAGCATCTTTTTGTTGATTGCTTTGAATTTTAACATGGAGCTCTGAAATCGTTTCTAATTCTTTGTTGAGGGGGGAAAGTGTAAGCTGACTTTTTCTGGGTCGGGCTGAAAATTTCAATTCACATGCCCATGTAGTTTTATTTTCAAGCTACATATAGTTGAGATTTGTAAATTTATGTTGATGTATCTTGATTTGTGTTCCTTAGATTTGTACTGTAATACCTTTTTTGTTGACAGATTTGAATTTTAACACGAGACTCTGAAATCTCTTTTAATTCTGTGTTTGGGAGGAAAAGTACAAGGTTCATTTAAATGCTTATGTAATTTTACTTTTAAGCTACATGTAATTTATCTGCATATTGTGATCTCTGTTCCTTAACATGGAATTTTAACATGGAACTCTGAAATTAATTCTTTGTTTGGGGGGTTATAAGCTAATCTTTTGTGGGTTGGGCTGAAAATTTGCAATTCAAATGCCCATGTAGTTTATTTCTAAGCTACAATTGGGTTGTGTTCGAATAATTTCACTTTATATGGGCCATTAGTTACACCAGTGTTGGGTCACTTAAGTAATCTTCGGATTGTGGGGCTTTAGTTCCCCGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCGGTGTACCTAGCATCAATTCTGGAGTATCTCACCGCGGAAGTGCTTGAATTGGCTGGAAATGCAAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGATGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

mRNA sequence

ATGGCGGGAAAAGGCGGGAAGGGGCTTTTGGCTGCAAAGACCCCAGCAGCTAACAAGGATAAGGATAAGGATAAGAAGAAGCCGATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCCGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCGGTGTACCTAGCATCAATTCTGGAGTATCTCACCGCGGAAGTGCTTGAATTGGCTGGAAATGCAAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGATGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Coding sequence (CDS)

ATGGCGGGAAAAGGCGGGAAGGGGCTTTTGGCTGCAAAGACCCCAGCAGCTAACAAGGATAAGGATAAGGATAAGAAGAAGCCGATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCCGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCGGTGTACCTAGCATCAATTCTGGAGTATCTCACCGCGGAAGTGCTTGAATTGGCTGGAAATGCAAGCAAGGATCTGAAAGTGAAGAGAATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGATGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Protein sequence

MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD
Homology
[Close]
BLAST of Lag0033295 vs. NCBI nr
Match: XP_004145372.1 (histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 histone H2A variant 1 [Cucumis sativus] >XP_008449356.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_008449358.1 PREDICTED: histone H2A variant 1 [Cucumis melo] >XP_022930908.1 histone H2A variant 1 [Cucurbita moschata] >XP_022967517.1 histone H2A variant 1 [Cucurbita maxima] >XP_022996250.1 histone H2A variant 1 [Cucurbita maxima] >XP_023532530.1 histone H2A variant 1 [Cucurbita pepo subsp. pepo] >XP_031737443.1 histone H2A variant 1 [Cucumis sativus] >XP_038887488.1 histone H2A variant 1 [Benincasa hispida] >XP_038887489.1 histone H2A variant 1 [Benincasa hispida] >KGN61697.1 hypothetical protein Csa_006318 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lag0033295 vs. NCBI nr
Match: XP_022145883.1 (histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant 1 [Momordica charantia])

HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKTP+ANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPSANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lag0033295 vs. NCBI nr
Match: XP_022963902.1 (histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A variant 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011211.1 Histone H2A variant 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLA+KTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLASKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lag0033295 vs. NCBI nr
Match: XP_023511677.1 (histone H2A variant 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKTPAA KDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTPAATKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINKASKD
Sbjct: 121 VIPHIHKSLINKASKD 136

[Close]
BLAST of Lag0033295 vs. NCBI nr
Match: KAF3961702.1 (hypothetical protein CMV_013715 [Castanea mollissima])

HSP 1 Score: 254.6 bits (649), Expect = 4.8e-64
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AANKDKDKDKK+P+S+SSRAGIQFPVGRIHRHLKTRISANGRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAANKDKDKDKKRPVSKSSRAGIQFPVGRIHRHLKTRISANGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK SKD
Sbjct: 121 VIPHIHKSLINKTSKD 136

[Close]
BLAST of Lag0033295 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.5e-64
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK +K+
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Lag0033295 vs. ExPASy Swiss-Prot
Match: Q9SII0 (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-59
Identity = 121/136 (88.97%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Lag0033295 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-59
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAAN--KDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGR 60
           MAGKGGKGLLAAKT AA    DKDKD+KK P+SRSSRAGIQFPVGRIHR LK R+SANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKASKD 137
           GGGVIPHIHKSLINK +K+
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of Lag0033295 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-59
Identity = 123/138 (89.13%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAA-NKDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGRV 60
           MAGKGGKGLLAAKT AA + DKDKDKKK P+SRSSRAG+QFPVGRIHR LK+R SA+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKASKD 137
           GGVIPHIHKSLINK SK+
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of Lag0033295 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 120/137 (87.59%), Postives = 127/137 (92.70%), Query Frame = 0 

Query: 1   MAGKGGKGLLAAKTPAA-NKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVG 60
           MAGKGGKGLLAAKT AA + +KDK KK P+SRSSRAG+QFPVGRIHR LK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKASKD 137
           GVIPHIHKSLINK+SK+
Sbjct: 121 GVIPHIHKSLINKSSKE 137

The following BLAST results are available for this feature:
BLAST of Lag0033295 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145372.13.0e-66100.00histone H2A variant 1 [Cucumis sativus] >XP_004145373.1 histone H2A variant 1 [C... [more]
XP_022145883.16.7e-6699.26histone H2A variant 1 [Momordica charantia] >XP_022145884.1 histone H2A variant ... [more]
XP_022963902.16.7e-6699.26histone H2A variant 1-like [Cucurbita moschata] >KAG6571446.1 Histone H2A varian... [more]
XP_023511677.11.5e-6599.26histone H2A variant 1-like [Cucurbita pepo subsp. pepo][more]
KAF3961702.14.8e-6496.32hypothetical protein CMV_013715 [Castanea mollissima][more]
BLAST of Lag0033295 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O236286.5e-6492.65Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q9SII01.3e-5988.97Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2... [more]
Q8S8572.2e-5988.49Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
Q8H7Y82.8e-5989.13Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q84MP71.1e-5887.59Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 113..131
score: 51.98
coord: 57..72
score: 69.94
coord: 86..100
score: 65.78
coord: 72..85
score: 84.63
coord: 27..49
score: 68.12
IPR002119Histone H2ASMARTSM00414h2a4coord: 16..136
e-value: 7.9E-69
score: 244.6
IPR002119Histone H2ACDDcd00074H2Acoord: 28..132
e-value: 3.40876E-56
score: 169.053
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 14..105
e-value: 1.2E-20
score: 74.2
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 16..136
e-value: 5.1E-56
score: 189.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 12..113
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 106..135
e-value: 1.1E-10
score: 41.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR23430:SF237HISTONE H2A VARIANT 1coord: 2..134
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033295.1Lag0033295.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity