Lag0033239 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033239
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNucleolar protein 10
Locationchr11: 41993542 .. 41999070 (+)
RNA-Seq ExpressionLag0033239
SyntenyLag0033239
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACAGACGTGGCTTCGAAGATTGGTGCTTCGGAGGTCAACTCTACTGTCAAAGCCGGTGAGGATAAACCGAATTGACTTATTTGCCCTTCCATGGATAAATCAAAATATATAAATTTTAGGCTAAATTATTAAAAATACCCTGATCTATGGGTTTGTTTCAAATTCGAAAATGCCCCTAACTTTGAAAAGTTTCAAAAATATCCATCAACTTTGAAAAATGTTTCAAAAATACCCTTATCGTTAATTTTTTTTGATGAAAACCGTTAGAATTTACGATGAGAGGAGGAAAAAAGAAGAAACATTTTTCAATAAGGATATTTTTTTAATTTTTTTGAAAGTTCAAGGGTATTTTTGAAACTGAAACTTTAACGGTTTTCATCCGAAAATTAACGGCAAGGGTATTTTTGAAACATTTTTCAAAATTCAGGGGTGTTTTTTGAAACTTTTCAAAGTTCAGGGGCATTTTTGAAACAAACCCCATAGTTCAGGGGTATTTATTTATGTTTTTTTAAATAATTTAGCCTAAATTTTAAAAATGTTTAAATACTATTTTGGTCCTTTACTTTTTGCTATGGTTCATTTTGGTACTTATACTTTTAAGAAATTACCAATTTGGTCCCTTCATTTACAATTTTTGTTTTTTCATTTTTCAATCATGATTTTAGCATGATATGTCACTTACTAAATTTCTTGAAATGTAATCGTAAATTTGATTAGAGAATCTTCGTTGTGTATAAGATTTACACTTAAGTTTTGCAAGTAGAGGCTAAATTAGTTACTTTTTAAAAGTACAAGGGCTAAAATGAACATTTTGAAAGTACAACGACCAAAATGAACATTTTAAAAGTATAAGGACAAAAATGAACCAAAGTTGAGGTCGAAGGTTCAATCCCCACCTCATATGTTGTCAAACAAACAAAAGAACCAAAGTCAAAAGTATAGGGACCAAAATAGGATTTAAACTTAAAAAAAAAAAAAACTTTTTAAGGCATGTGCTAAAATGAGCATAACGTAATTGATATGTACCATAGGTTCGGGATTTGAATCCTCCATACCTAAATGTTGTTGATCTTAAAAAGGCTGAGATTGAACATCTGACCTTTTAGTCGAGATACAAACTTTATGCCAGATGAGTCATGCTCTTGTTGAACATTTGATAACTATGCAAATGTGTACTTAATAAAAATGAAACCCATAGTAAAGAATTTGGGGGAGAAAACAAACATAATTTTCAAGAAGCAAAATTAAAAACCAAATGGTTATCAAACCAGGACTTGATTTTTTTTTATTTGGTTGATGTTCTTTTGGTAAAATTTCAATTGAATTCTTACAATTTTGTTAAAATTGACAAGGGATCACTTTTACTCTTTAGTTTTGTTTTTTTCCCCTTAAAAATATACTTATTTTCTTTTATACTCACCCTAAATCCTATTTAAGGCGACTAACAAAGTTTGTCAAATGGAAAATCATGTTGTTGTAATGTACTTAAAAATGTCTCAATAAAAAAACATTGAGAATGATGAATAAGATTTAGTTTCTATATAGTAATAACATCTCAAGATGGAAGGTTCAAATATCTAACATTTTGTTCGAGAGTTTATATCTTAATTAGTTTAGTTATGTTTAAATTGATATCTAAGAACATGATCGAGATGCTTTATTAAAAAAAAGTACTATTAATCGGAAGATTTTTAAAAGAAAAAAAAATCAAAATTTTAATTAAACAAGACAAGTTTAGAAGATACTCTAGTCATCCATATATATATATATATTTAAAGGAAAATTGTATTTTAAGTTATCTAACCTAACAGCCAAAATAAATTTCAATAAAAAAAAAAAAACTAAATAAATTGAAACAAAAATCGAAAATATTGAAAAAAAAAAAGATAGAAAGAGAAAAAGACGAAAATAGCCTTTCCAACTGATTTAAATAAGTTCTTAAACCCTAGCTGCTCGATTCCCTGAATCCCGCCATTTTCCGTTCCTCCATTGTCTCGACAAGCTTTCAGGCGTCAGGGTTCTTCGTCTGGTATTGATTTCCAAAACCCTCGACTATTAATGCAATCATTACTGAAATTTAGATGCTTTTATACAAATCTTCTCTGTTAAGGGCTTCTGCATGAAGTTCTGTGGAATGACTTGATTTTTCCCCAAAAATCTTCAGGTTGAGTGTTTTGCAGCGATGTATCTTCAATTTTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGGTTTGTATTCCTTGTCCATCTTTTCGCTTATTTTCTGGTTGGGGTTTGAATTTTTTAATCCTAAATGCATAAACTGCGTCTGCCATGCTGTTTGATTGAGATATAGATGACGTAAACTTCCTTTCCAACTATGGAGTATTGGTCTTATTGTGTCACGAATAAGCAGTGATTATATGGAGTCTCAGATGTTGAAGATAATGAAGGATTACCGAACATGAGGTTGGAGATTGAATTAGTTATATTTGTGCCGCCCCTTCTTATAAGATTAGACCTTTACCTCTCTTAAGATTGAAGTAGAAGTCTACCATCGTTTAGTGCTAGTAGTTTGCGCAGTTTGCATATACTTTGTACACTGATTAAATGATGGATTAAATCTATGGTGGCACCTTTGCTTAGAATGTCTCGTCTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAACTTCCAATTCTCCCATCTTTACTTCACCATATCATGATGGTAGATTAGAAATACCTCGGTGGCTTGGTCCCTTCCTCGACCATGGGGGAGAAGTTTTAGAATTTAGATGCCATAATTTCTCCACTATTTCATTGGTAAGTTTCACCATTGATGGTCTTGCATCATCATGTGCCCTTTGCTTGGGACAACTTTCTTGAGAGGAGAGCATAGGCTTCGTAAAGACACTCAACTTCGTGATCTTCAACGATACATTCTCACTCCATTACCAGGCCAGAGAGGATATCTAAATTCTGATTTACTTGGATGATTTGATGGGTTGTTGAAGACATTATGTAAGCTATAAATTTCTTCTGCTAAGATTGTTTCCTCATCTTTAATCCTTTTTCATGCAAAGTAGAGCTTCATAGTTCATAATGAGGAACTTGGACGTATTCCATGGCAATATGCCATGCAACCCAGAAAGGGGGTCACCCATTTTACCATTTTAGGAAGAGTGTATTCAATTTATCGATGACAACCTTTTCTTTTGACCCTTAATTAAAAGAGAGCTTGAAGATCATATGAGTGTTCTTTGCATCTTTGCCTTATCCTTGAATCACGTCACATGATTAACATGAACAAGACAATTGTTGCTGGTTTCATTGTAGGGGAAGTTCAACAGAAAGCCAATAAGGCAGGGTCTTTGTTTTGTTCTTGGTCTCTTCAATATCATGATATGCCAGCCTCTTTAAAGTCTTCTAGGAAAGATTTTTGGAATCCTGTGGGCAAGACTTGAGGGATTGGAGAGGAGGTTACAGAAATGGAAGAATTCAATCTTGTGTGTAGGTGGATGTTGAGCTTACAAAAATGGAAGAGTTCAATTGTTGATAGAAGGTCCTAGAGCTTCATTGCTGCTAATAAGTAATACATTATCCTTTCCACTTGAAAATTCAAACCAGATACCATATTTTGATTTTGGGTGTGGCTGCTAGGTTGAAGGCAATGGAGGTTGAAACCTTCATTGGCATCTGAGGATAGTGGTTATTTCTCTTCAAGGGTGCTGTCTGGTTACCTTATTAAGTCTAGAGATTGATGCCTTTCTTACTTACCAAGGCTTTCAAGATCTTGTGGAGTCTCAAAATTCCAAAGCAATTTTCCAGGGCCCCACTCTTTGAGAACTGAACGCTGCTAGTTCTTTCCAAAGGTGTTCACTCAACTTTTTGTCTCTTTACTGGTGCATTCTTTGAATGAATACCATGAAAGGTTGTAAGCATCATTTCCTGTATAGTGTGAAGCTGTGGATGACCTTTTTAAACACCTTTAGCCTCTATTGAGGCTCTCCTAAATTCTTTCCTGAAGCTTCAAATTAACTTTTATGTCCAAAAGTTCTTTGGATCAATACAGTGCTGAAAATCTTGTGGAAGCTGGGTTTGGAGGAGTCAGAGGCCCTTTAGAATTCCTTTGTCCTTATAGAGTTTTCTTGAGATATTGCAAGGCCTGTATAACTTATCCTGATTCTAATTTATCGATGTATTTGTCTGAATACATGTTTAAATGAATAATTTATTGTCCATAAATGTAACAAGAAAATACGTTTGAATGTCTGATGCAATTTAACTTTGTTTAGATAATTATATGGGATGGTAAAACTCTAATCTTTTAACTAAAAGGGTATAGCTAACACAGTGCTGTAAGATAATACAACGGGACCTTTATTGGAAAATTGTCCATAATTATTTTTCCTCACTTCCTGACCCTGTGATTTCCCACTTCCAATATCTTACAATGGTATATACATGCCCTCCTGCTAGGCTGCTACTCTCTTTTCCCTTTTTCATAGAGCATTTTAGTCTTCCTCCGTGACTCAATTGACAACTAGAACGCAATATGATTGCAGACTGCCAGTTTTGAGGCAGAGCCAGCGTACTTATTGTTCAGGGTGCAATGATTCTGGATTTTATTCTGCACCATCTAACTTCTAATGGGTTTGTGCTGAGTTTTTAGAGTTGTTACCCTTTTATTTATTTTATTTTATTTTTTAATTTTTAATTTTTAAATATATATTTTTTTATTTCCATCTGTGGTAGAATTATACATTTTAAAATGCAAACCATTGTGCCAATGAAATACTAATGAGTTAATCCCTGCGCACATTTCCACTACCTTGATAAACCATTGCTAATTGGCAATTGCTCTGCAATGTTTATACTTTTTTTTTTTTTAATGCTGGTATGTAATGTATGCTAAATTATCTAGCTTGCATTTTCTTTTCTCTTGTACAGAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCATCCAGGTAAAATTCTTTGCATTATCGGGCTAGTATTGTGCCTTCTTGTTTCACGTCTTGCATAATAGCAATAACAATGATTTTGAAAGGAAGAAAGGCTATGCTATAATATCTCTGTATCGTTATGTTTTGTCATGTGGGAATTGGTTGAAATAATATACATGGTCTATTTCAGTTGTAGTTATGAAGATTGCAATTATACATTCTTGAGAATGGATTTGTACTGTTGATATACACCATGCATACACTGTTTATCATTGGTTGACATATAGAAGAGTATAATATCATTGCTCACTTTTCTCCGTAGAGATGCCATCATTTGTTCTCTATATCGTGTGATTGTATTAGTTCAGATATTTACTGCTAGGCTGTCCCTTCAATGCGATCATGATTTTAGCAGTTTCTAACCTGATTACCTGTTGTACATTTTCTGACTGCAGCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCTCCAAAGTACTGA

mRNA sequence

ATGAACACAGACGTGGCTTCGAAGATTGGTGCTTCGGAGGTCAACTCTACTGTCAAAGCCGCTGCTCGATTCCCTGAATCCCGCCATTTTCCGTTCCTCCATTGTCTCGACAAGCTTTCAGGCGTCAGGGTTCTTCGTCTGGTTGAGTGTTTTGCAGCGATGTATCTTCAATTTTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGAATGTCTCGTCTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAACTTCCAATTCTCCCATCTTTACTTCACCATATCATGATGGTAGATTAGAAATACCTCGGTGGCTTGGTCCCTTCCTCGACCATGGGGGAGAAGTTTTAGAATTTAGATGCCATAATTTCTCCACTATTTCATTGAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCATCCAGCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCTCCAAAGTACTGA

Coding sequence (CDS)

ATGAACACAGACGTGGCTTCGAAGATTGGTGCTTCGGAGGTCAACTCTACTGTCAAAGCCGCTGCTCGATTCCCTGAATCCCGCCATTTTCCGTTCCTCCATTGTCTCGACAAGCTTTCAGGCGTCAGGGTTCTTCGTCTGGTTGAGTGTTTTGCAGCGATGTATCTTCAATTTTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGAATGTCTCGTCTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAACTTCCAATTCTCCCATCTTTACTTCACCATATCATGATGGTAGATTAGAAATACCTCGGTGGCTTGGTCCCTTCCTCGACCATGGGGGAGAAGTTTTAGAATTTAGATGCCATAATTTCTCCACTATTTCATTGAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCATCCAGCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCTCCAAAGTACTGA

Protein sequence

MNTDVASKIGASEVNSTVKAAARFPESRHFPFLHCLDKLSGVRVLRLVECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Homology
[Close]
BLAST of Lag0033239 vs. NCBI nr
Match: KAG6606368.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-22
Identity = 70/141 (49.65%), Postives = 71/141 (50.35%), Query Frame = 0 

Query: 43  RVLRLV---ECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSP 102
           RV RL+   EC A MYLQFYINDNGDKVYTTK                            
Sbjct: 12  RVFRLIFRFECLATMYLQFYINDNGDKVYTTK---------------------------- 71

Query: 103 YHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSR 162
                                              KESPLGLVTQSAHPARFSPDDKYSR
Sbjct: 72  -----------------------------------KESPLGLVTQSAHPARFSPDDKYSR 89

Query: 163 QRVLLKKRFGLLPTQQPPPKY 181
           QRVLLKKRFGLLPTQ PPPKY
Sbjct: 132 QRVLLKKRFGLLPTQHPPPKY 89

[Close]
BLAST of Lag0033239 vs. NCBI nr
Match: QHN85708.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea])

HSP 1 Score: 114.8 bits (286), Expect = 7.9e-22
Identity = 69/128 (53.91%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 54  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGP 113
           MYLQFYINDNGDKVYTTK            LS     + S +F   YH            
Sbjct: 1   MYLQFYINDNGDKVYTTKVTEIMFSTAYSILS-----NASTLFI--YH------------ 60

Query: 114 FLDHGGEVLEFRCHNFSTISL-KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLP 173
                             +S+ KE+PLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLP
Sbjct: 61  ------------------LSMQKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLP 91

Query: 174 TQQPPPKY 181
           TQQPPPKY
Sbjct: 121 TQQPPPKY 91

[Close]
BLAST of Lag0033239 vs. NCBI nr
Match: RWR83981.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-20
Identity = 63/130 (48.46%), Postives = 66/130 (50.77%), Query Frame = 0 

Query: 51  FAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRW 110
           FAAMYLQ+YIN+NGDKVYTTK                                       
Sbjct: 59  FAAMYLQYYINENGDKVYTTK--------------------------------------- 118

Query: 111 LGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGL 170
                                   KESPLG+ TQSAHPARFSPDDKYSRQRVLLKKRFGL
Sbjct: 119 ------------------------KESPLGVATQSAHPARFSPDDKYSRQRVLLKKRFGL 125

Query: 171 LPTQQPPPKY 181
           LPTQQPPPKY
Sbjct: 179 LPTQQPPPKY 125

[Close]
BLAST of Lag0033239 vs. NCBI nr
Match: KAG7011275.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 63/131 (48.09%), Postives = 64/131 (48.85%), Query Frame = 0 

Query: 48  VECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEI 107
           VEC A MYL +YINDNGDKVYTTK                                    
Sbjct: 3   VECLATMYLMYYINDNGDKVYTTK------------------------------------ 62

Query: 108 PRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKR 167
                                      KESPLGLV QSAHPARFSPDDKYSRQRVLLKKR
Sbjct: 63  ---------------------------KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKR 70

Query: 168 FGLLPTQQPPP 179
           FGLLPTQQPPP
Sbjct: 123 FGLLPTQQPPP 70

[Close]
BLAST of Lag0033239 vs. NCBI nr
Match: KCW88531.1 (hypothetical protein EUGRSUZ_A00909, partial [Eucalyptus grandis])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-19
Identity = 64/129 (49.61%), Postives = 64/129 (49.61%), Query Frame = 0 

Query: 52  AAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWL 111
           AAMYLQFYINDNGDKVYTTK                                        
Sbjct: 30  AAMYLQFYINDNGDKVYTTK---------------------------------------- 89

Query: 112 GPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLL 171
                                  KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLL
Sbjct: 90  -----------------------KESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLL 95

Query: 172 PTQQPPPKY 181
           PTQQPP KY
Sbjct: 150 PTQQPPQKY 95

[Close]
BLAST of Lag0033239 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 6.7e-16
Identity = 53/127 (41.73%), Postives = 58/127 (45.67%), Query Frame = 0 

Query: 54  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGP 113
           MYLQ YIN+ G+KVYTTK                                          
Sbjct: 1   MYLQCYINEKGEKVYTTK------------------------------------------ 60

Query: 114 FLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPT 173
                                KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPT
Sbjct: 61  ---------------------KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPT 64

Query: 174 QQPPPKY 181
           Q  P +Y
Sbjct: 121 QNAPLQY 64

[Close]
BLAST of Lag0033239 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 44/125 (35.20%), Postives = 51/125 (40.80%), Query Frame = 0 

Query: 54  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGP 113
           M+LQFY+N+NG++VYT K V                                        
Sbjct: 1   MFLQFYLNENGERVYTLKKV---------------------------------------- 60

Query: 114 FLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPT 173
                                   P G  T SAHPARFSPDDK+SR RV +KKRFGLL T
Sbjct: 61  -----------------------DPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLT 62

Query: 174 QQPPP 179
           QQP P
Sbjct: 121 QQPRP 62

[Close]
BLAST of Lag0033239 vs. ExPASy Swiss-Prot
Match: Q6BQP3 (H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP10 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 140 GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 175
           G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Sbjct: 24  GEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58

[Close]
BLAST of Lag0033239 vs. ExPASy Swiss-Prot
Match: Q54J26 (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 135 KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 181
           KESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQQPP ++
Sbjct: 19  KESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64

[Close]
BLAST of Lag0033239 vs. ExPASy Swiss-Prot
Match: Q6Q547 (H/ACA ribonucleoprotein complex subunit NOP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 135 KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 175
           K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGL+P Q
Sbjct: 19  KVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58

The following BLAST results are available for this feature:
BLAST of Lag0033239 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606368.12.7e-2249.65H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr... [more]
QHN85708.17.9e-2253.91H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea][more]
RWR83981.17.4e-2048.46H/ACA ribonucleoprotein complex subunit 3-like protein [Cinnamomum micranthum f.... [more]
KAG7011275.11.3e-1948.09H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr... [more]
KCW88531.12.1e-1949.61hypothetical protein EUGRSUZ_A00909, partial [Eucalyptus grandis][more]
BLAST of Lag0033239 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93XX86.7e-1641.73H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O... [more]
Q6DRH51.1e-1035.20H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S... [more]
Q6BQP31.1e-1088.57H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain A... [more]
Q54J261.1e-1071.74H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 G... [more]
Q6Q5479.4e-1075.00H/ACA ribonucleoprotein complex subunit NOP10 OS=Saccharomyces cerevisiae (strai... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 131..168
e-value: 3.0E-13
score: 49.6
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 54..75
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 134..180
NoneNo IPR availableGENE3D2.20.28.40H/ACA ribonucleoprotein complex, subunit Nop10coord: 124..170
e-value: 2.7E-11
score: 45.2
NoneNo IPR availablePANTHERPTHR13305:SF2H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEINcoord: 134..180
coord: 54..75
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILY144210Nop10-like SnoRNPcoord: 134..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033239.1Lag0033239.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0030515 snoRNA binding