Lag0033216 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033216
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionmitochondrial import receptor subunit TOM9-2-like
Locationchr11: 41834077 .. 41834394 (+)
RNA-Seq ExpressionLag0033216
SyntenyLag0033216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCCGAAAAGGCGGAGTCTCTCTCCCGGAACGGCGAGGGTCCAAGGCCGAAGGCAACAAAAGCGGCATAATCTCCAGGTTCTCCCAGTCTTCTATGGTGTCTCGAGGAAGAGAGGCTGCTTCTAACGCGGTCTTCGTCTCCAAGAAGCTCCTCCGAAGCACTGGAAAAGCTGCCTGGATCGCCGGCACCACTTTCATCGTCCTCGTCGTCCCTCTCATCATCGAAATGGATCGCGAGCAGCAGCTGAACGAGCTCGAGCTCCAGCAAGCTAGCCTTCTTGGAGCCCCTTCTGTTGGCCCGCCGCTTAAGTGA

mRNA sequence

ATGGCGTCCCGAAAAGGCGGAGTCTCTCTCCCGGAACGGCGAGGGTCCAAGGCCGAAGGCAACAAAAGCGGCATAATCTCCAGGTTCTCCCAGTCTTCTATGGTGTCTCGAGGAAGAGAGGCTGCTTCTAACGCGGTCTTCGTCTCCAAGAAGCTCCTCCGAAGCACTGGAAAAGCTGCCTGGATCGCCGGCACCACTTTCATCGTCCTCGTCGTCCCTCTCATCATCGAAATGGATCGCGAGCAGCAGCTGAACGAGCTCGAGCTCCAGCAAGCTAGCCTTCTTGGAGCCCCTTCTGTTGGCCCGCCGCTTAAGTGA

Coding sequence (CDS)

ATGGCGTCCCGAAAAGGCGGAGTCTCTCTCCCGGAACGGCGAGGGTCCAAGGCCGAAGGCAACAAAAGCGGCATAATCTCCAGGTTCTCCCAGTCTTCTATGGTGTCTCGAGGAAGAGAGGCTGCTTCTAACGCGGTCTTCGTCTCCAAGAAGCTCCTCCGAAGCACTGGAAAAGCTGCCTGGATCGCCGGCACCACTTTCATCGTCCTCGTCGTCCCTCTCATCATCGAAATGGATCGCGAGCAGCAGCTGAACGAGCTCGAGCTCCAGCAAGCTAGCCTTCTTGGAGCCCCTTCTGTTGGCCCGCCGCTTAAGTGA

Protein sequence

MASRKGGVSLPERRGSKAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAAWIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK
Homology
[Close]
BLAST of Lag0033216 vs. NCBI nr
Match: XP_022931051.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita moschata] >XP_023534578.1 mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo] >KAG6606348.1 Mitochondrial import receptor subunit TOM9-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036290.1 Mitochondrial import receptor subunit TOM9-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 4.3e-44
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MASRKGGVSLPERRGSKAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAA 60
           MASRKGGVSLPERRGSKAEGNK+GIISRF QSS VSRGREAASNAVFVSKKLLRSTGKAA
Sbjct: 1   MASRKGGVSLPERRGSKAEGNKNGIISRFYQSSAVSRGREAASNAVFVSKKLLRSTGKAA 60

Query: 61  WIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK 106
           WIAGTTF+VLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK
Sbjct: 61  WIAGTTFLVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK 105

[Close]
BLAST of Lag0033216 vs. NCBI nr
Match: XP_022155671.1 (mitochondrial import receptor subunit TOM9-2 [Momordica charantia])

HSP 1 Score: 187.2 bits (474), Expect = 7.3e-44
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MASRKGGVSLPERRGSKAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAA 60
           MASRKGGVSLPERRGSKAEGNK+GIISRFSQSSMVSRGREAAS+AVFVSKKLLRSTGKAA
Sbjct: 1   MASRKGGVSLPERRGSKAEGNKNGIISRFSQSSMVSRGREAASSAVFVSKKLLRSTGKAA 60

Query: 61  WIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK 106
           WIAGTTF++LVVPLIIEMDREQQ+NELELQQASLLGAPSVGPP K
Sbjct: 61  WIAGTTFVILVVPLIIEMDREQQMNELELQQASLLGAPSVGPPHK 105

[Close]
BLAST of Lag0033216 vs. NCBI nr
Match: XP_022996184.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 9.5e-44
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MASRKGGVSLPERRGSKAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAA 60
           MASRKGGVSLPERRGSKAEGNK+GIISRF QSS V+RGREAASNAVFVSKKLLRSTGKAA
Sbjct: 1   MASRKGGVSLPERRGSKAEGNKNGIISRFYQSSAVTRGREAASNAVFVSKKLLRSTGKAA 60

Query: 61  WIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK 106
           WIAGTTF+VLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK
Sbjct: 61  WIAGTTFLVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPLK 105

[Close]
BLAST of Lag0033216 vs. NCBI nr
Match: KAF7804605.1 (mitochondrial import receptor subunit TOM9-2 [Senna tora])

HSP 1 Score: 143.7 bits (361), Expect = 9.2e-31
Identity = 75/100 (75.00%), Postives = 89/100 (89.00%), Query Frame = 0 

Query: 4   RKGGVSLPERRGSKAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAAWIA 63
           R+GGVSLP+R G  ++  +S IIS+ SQS +VSRG++AA +A FV+KKLL+STGKAAWIA
Sbjct: 6   RRGGVSLPDRSG-HSKNEQSSIISKISQSQLVSRGKQAAGDAAFVTKKLLKSTGKAAWIA 65

Query: 64  GTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPP 104
           GTTF++LVVPLIIEMDREQQLNELELQQASLLG PSVGPP
Sbjct: 66  GTTFLILVVPLIIEMDREQQLNELELQQASLLGTPSVGPP 104

[Close]
BLAST of Lag0033216 vs. NCBI nr
Match: XP_002301850.1 (mitochondrial import receptor subunit TOM9-2 [Populus trichocarpa] >PNT51751.1 hypothetical protein POPTR_002G257200 [Populus trichocarpa])

HSP 1 Score: 141.7 bits (356), Expect = 3.5e-30
Identity = 72/102 (70.59%), Postives = 88/102 (86.27%), Query Frame = 0 

Query: 3   SRKGGVSLPERRGSKAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAAWI 62
           SR+GG+SLPERRG  +   +  I+++ + S +VS+G+EAA +AVFV+KKLL+STGKAAWI
Sbjct: 5   SRRGGISLPERRGRGSSKQEPNILAKINNSQIVSKGKEAACDAVFVAKKLLKSTGKAAWI 64

Query: 63  AGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVGPPL 105
           AGTTF++L VPLIIEMDREQQLNELELQQ SLLGAP VGPPL
Sbjct: 65  AGTTFLILAVPLIIEMDREQQLNELELQQQSLLGAPPVGPPL 106

[Close]
BLAST of Lag0033216 vs. ExPASy Swiss-Prot
Match: Q9FNC9 (Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=TOM9-2 PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-24
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 0 

Query: 17 KAEGNKSGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAAWIAGTTFIVLVVPLII 76
          K+ G    I++R S S +VS+GR AA +AV VSKKLLRSTGKAAWIAGTTF++LVVPLII
Sbjct: 10 KSGGGDPNILARISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTTFLILVVPLII 69

Query: 77 EMDREQQLNELELQQASLLGAP 99
          EMDRE Q+NE+ELQQASLLGAP
Sbjct: 70 EMDREAQINEIELQQASLLGAP 91

[Close]
BLAST of Lag0033216 vs. ExPASy Swiss-Prot
Match: O64497 (Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=TOM9-1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-20
Identity = 48/82 (58.54%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 23  SGIISRFSQSSMVSRGREAASNAVFVSKKLLRSTGKAAWIAGTTFIVLVVPLIIEMDREQ 82
           S I+++ S   +VS+GR AA +AV+VSKKLL+STGKAAWIAGTTF++L VPLI+E++++ 
Sbjct: 13  SSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDH 72

Query: 83  QLNELELQQASLLGAPSVGPPL 105
           +L E++ +QASLLG P VG  L
Sbjct: 73  RLGEIDFEQASLLGTPPVGAML 94

[Close]
BLAST of Lag0033216 vs. ExPASy Swiss-Prot
Match: A6QPI6 (Mitochondrial import receptor subunit TOM22 homolog OS=Bos taurus OX=9913 GN=TOMM22 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 45  AVFVSKKLLRSTGKAAWIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVG 102
           ++FV++K+ R +  A WI  T+F++LV+P++ E ++ Q   + +LQQ  +L  P+ G
Sbjct: 68  SLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTG 124

[Close]
BLAST of Lag0033216 vs. ExPASy Swiss-Prot
Match: Q9NS69 (Mitochondrial import receptor subunit TOM22 homolog OS=Homo sapiens OX=9606 GN=TOMM22 PE=1 SV=3)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 45  AVFVSKKLLRSTGKAAWIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVG 102
           ++FV++K+ R +  A WI  T+F++LV+P++ E ++ Q   + +LQQ  +L  P+ G
Sbjct: 70  SLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTG 126

[Close]
BLAST of Lag0033216 vs. ExPASy Swiss-Prot
Match: Q4R3C7 (Mitochondrial import receptor subunit TOM22 homolog OS=Macaca fascicularis OX=9541 GN=TOMM22 PE=2 SV=3)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 45  AVFVSKKLLRSTGKAAWIAGTTFIVLVVPLIIEMDREQQLNELELQQASLLGAPSVG 102
           ++FV++K+ R +  A WI  T+F++LV+P++ E ++ Q   + +LQQ  +L  P+ G
Sbjct: 70  SLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTG 126

The following BLAST results are available for this feature:
BLAST of Lag0033216 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931051.14.3e-4496.19mitochondrial import receptor subunit TOM9-2-like [Cucurbita moschata] >XP_02353... [more]
XP_022155671.17.3e-4494.29mitochondrial import receptor subunit TOM9-2 [Momordica charantia][more]
XP_022996184.19.5e-4495.24mitochondrial import receptor subunit TOM9-2-like [Cucurbita maxima][more]
KAF7804605.19.2e-3175.00mitochondrial import receptor subunit TOM9-2 [Senna tora][more]
XP_002301850.13.5e-3070.59mitochondrial import receptor subunit TOM9-2 [Populus trichocarpa] >PNT51751.1 h... [more]
BLAST of Lag0033216 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNC91.0e-2473.17Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=... [more]
O644974.5e-2058.54Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=... [more]
A6QPI62.6e-0435.09Mitochondrial import receptor subunit TOM22 homolog OS=Bos taurus OX=9913 GN=TOM... [more]
Q9NS692.6e-0435.09Mitochondrial import receptor subunit TOM22 homolog OS=Homo sapiens OX=9606 GN=T... [more]
Q4R3C72.6e-0435.09Mitochondrial import receptor subunit TOM22 homolog OS=Macaca fascicularis OX=95... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017411Mitochondrial outer membrane translocase complex, subunit Tom22, plantPIRSFPIRSF038151TOM9-2_plantcoord: 1..104
e-value: 1.0E-42
score: 142.0
IPR017411Mitochondrial outer membrane translocase complex, subunit Tom22, plantPANTHERPTHR46867MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2coord: 2..100
IPR005683Mitochondrial import receptor subunit Tom22PFAMPF04281Tom22coord: 41..91
e-value: 3.6E-7
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033216.1Lag0033216.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005741 mitochondrial outer membrane