Lag0033179 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033179
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionS-protein homolog
Locationchr11: 41469152 .. 41469586 (+)
RNA-Seq ExpressionLag0033179
SyntenyLag0033179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATGAAATCTTGTTTGGCTTTGGTTTTGGTATTGGCATTGACATTGACATTGGTTGAACCATGCTTTTCATTTCGGTTTAGTCCTTGGAGGGTGCGAGTGTTTAACAACATGACAAATGGAGAAACAGTGTTGATTCATTGCAAATCCAAGGACGATGATCTGGGACAACATAATCTCGAAGTCGGGAAGGAGCTAACGTGGGGATTTAGAGAGAATATATTGTCGTCGACATTGTTTTGGTGCTACATACGCAATCAACATGATCATGTCTCTTTAGAAGTGTTTAATGCTGAAGATTATAACCTATACTATAGATGTAAGGGCTTAGAGTGCGTTTGGTCAATAAGGGATGATGGAATTTATCAGAGAAATAAGAATAGGGTCGACAATAAATTTTTTTTGAGAGCTAAATGGGAGCCCGGCTGGTAG

mRNA sequence

ATGACTATGAAATCTTGTTTGGCTTTGGTTTTGGTATTGGCATTGACATTGACATTGGTTGAACCATGCTTTTCATTTCGGTTTAGTCCTTGGAGGGTGCGAGTGTTTAACAACATGACAAATGGAGAAACAGTGTTGATTCATTGCAAATCCAAGGACGATGATCTGGGACAACATAATCTCGAAGTCGGGAAGGAGCTAACGTGGGGATTTAGAGAGAATATATTGTCGTCGACATTGTTTTGGTGCTACATACGCAATCAACATGATCATGTCTCTTTAGAAGTGTTTAATGCTGAAGATTATAACCTATACTATAGATGTAAGGGCTTAGAGTGCGTTTGGTCAATAAGGGATGATGGAATTTATCAGAGAAATAAGAATAGGGTCGACAATAAATTTTTTTTGAGAGCTAAATGGGAGCCCGGCTGGTAG

Coding sequence (CDS)

ATGACTATGAAATCTTGTTTGGCTTTGGTTTTGGTATTGGCATTGACATTGACATTGGTTGAACCATGCTTTTCATTTCGGTTTAGTCCTTGGAGGGTGCGAGTGTTTAACAACATGACAAATGGAGAAACAGTGTTGATTCATTGCAAATCCAAGGACGATGATCTGGGACAACATAATCTCGAAGTCGGGAAGGAGCTAACGTGGGGATTTAGAGAGAATATATTGTCGTCGACATTGTTTTGGTGCTACATACGCAATCAACATGATCATGTCTCTTTAGAAGTGTTTAATGCTGAAGATTATAACCTATACTATAGATGTAAGGGCTTAGAGTGCGTTTGGTCAATAAGGGATGATGGAATTTATCAGAGAAATAAGAATAGGGTCGACAATAAATTTTTTTTGAGAGCTAAATGGGAGCCCGGCTGGTAG

Protein sequence

MTMKSCLALVLVLALTLTLVEPCFSFRFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYIRNQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIYQRNKNRVDNKFFLRAKWEPGW
Homology
BLAST of Lag0033179 vs. NCBI nr
Match: XP_023532937.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-42
Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 0

Query: 2   TMKSCLALVLVLALTLTLVEPCFSFRFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNL 61
           T++SCLAL+L LA  ++  E CF++RF  WR+RVFN+M++GET+ IHCKSKDDDLG+  L
Sbjct: 3   TIRSCLALLLGLAFVMS--ESCFAYRFDAWRIRVFNDMSHGETLRIHCKSKDDDLGRQTL 62

Query: 62  EVGKELTWGFRENILSSTLFWCYIRNQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDG 121
           +VG  L W FRENI  +TLFWC I + + H +LEVFN+ D  LY+RC G  C+WSIRDDG
Sbjct: 63  KVGNNLKWEFRENIWLTTLFWCNINSPYGHAALEVFNSRDPVLYFRCHGYVCIWSIRDDG 122

Query: 122 IYQRNKNRVDNKFFLRAKWEPG 144
           IY RN ++ +N + L AKWEPG
Sbjct: 123 IYVRNSSQ-NNNYELIAKWEPG 141

BLAST of Lag0033179 vs. NCBI nr
Match: XP_022931006.1 (S-protein homolog 1-like [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-42
Identity = 82/142 (57.75%), Postives = 108/142 (76.06%), Query Frame = 0

Query: 2   TMKSCLALVLVLALTLTLVEPCFSFRFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNL 61
           T++SCLAL+LVLA  ++  E CF++RF  WR+RVFN+M++GET+ IHCKSKDDDLG+  L
Sbjct: 3   TIRSCLALLLVLAFVMS--ESCFAYRFDAWRIRVFNDMSHGETLKIHCKSKDDDLGRQTL 62

Query: 62  EVGKELTWGFRENILSSTLFWCYIRNQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDG 121
           +VG  + W FREN+  +TLFWC I + H H +LEVFN+ D  LY+RC G  C+WSIRDDG
Sbjct: 63  KVGNNIKWEFRENVWLTTLFWCNIYSPHGHAALEVFNSRDPVLYFRCHGFVCIWSIRDDG 122

Query: 122 IYQRNKNRVDNKFFLRAKWEPG 144
           IY RN ++ +N + L AKWE G
Sbjct: 123 IYVRNSSQ-NNNYELIAKWERG 141

BLAST of Lag0033179 vs. NCBI nr
Match: XP_016900393.1 (PREDICTED: pumilio homolog 15-like, partial [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-42
Identity = 83/120 (69.17%), Postives = 93/120 (77.50%), Query Frame = 0

Query: 4   KSCLALVLVLALTLTLVEPCFSFRFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEV 63
           KSCL  VLVL       +PCF+FRFS W VRVFN+M NGE + IHCKSKDDDLG   L+V
Sbjct: 6   KSCLPFVLVLLALAMQGQPCFAFRFSRWTVRVFNDMKNGEMLSIHCKSKDDDLGLRYLDV 65

Query: 64  GKELTWGFRENILSSTLFWCYIRNQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIY 123
             + TW FREN+ SSTLFWCYIRNQ DHVSLEVFNA + NLYYRCK  EC+WSIR+DGIY
Sbjct: 66  RTQFTWSFRENLWSSTLFWCYIRNQDDHVSLEVFNAYEPNLYYRCKSFECIWSIREDGIY 125

BLAST of Lag0033179 vs. NCBI nr
Match: XP_018469931.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108841669 [Raphanus sativus])

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-26
Identity = 52/118 (44.07%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 27  RFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYIR 86
           + S W++ V N +   ET+ IHCKSKDDDLG+ NL +G + +W FREN+L +TLFWCY+ 
Sbjct: 37  KISDWQITVVNGIVTSETLFIHCKSKDDDLGEQNLRLGDKFSWNFRENMLHTTLFWCYLS 96

Query: 87  NQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIYQRNKNRVDNKFFLRAKWEPGW 145
               H++++VF  +D  L++RC   +CVW+ + DG+Y  N      ++ L  KWE GW
Sbjct: 97  KNDGHMNVKVF-WDDVILFHRCGWKQCVWAAKTDGLYLWNS--AIGEYLLLEKWEAGW 151

BLAST of Lag0033179 vs. NCBI nr
Match: KAG2241623.1 (hypothetical protein Bca52824_090196 [Brassica carinata])

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-26
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 0

Query: 27  RFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYIR 86
           + S W+V V N +T  ET+ +HCKSK+DDLG+HNL +G   +W F EN+L STLFWCY+ 
Sbjct: 37  KISEWQVMVVNGLTTSETLFVHCKSKEDDLGEHNLRLGDRFSWNFGENMLHSTLFWCYLS 96

Query: 87  NQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIYQRNKNRVDNKFFLRAKWEPGW 145
               H+++ VF  +D  L++RC   +CVW+ + DG+Y    N  + +  L  KWE GW
Sbjct: 97  KDDSHMNVNVF-WDDVILFHRCGWTKCVWTAKTDGLYL--WNFANGEDLLLEKWEAGW 151

BLAST of Lag0033179 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 27  RFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYIR 86
           + S W+V V N +T GET+ IHCKSK+DDLG+ NL+     +W F EN+L ST FWCY+ 
Sbjct: 37  KISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMN 96

Query: 87  NQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIYQRNKNRVDNKFFLRAKWEPGW 145
             + H+++ VF  +D  L++RC    C+W+ + DG+Y  N      +  L  KWE GW
Sbjct: 97  KDNGHMNVNVF-WDDVILFHRCGWKNCIWTAKTDGLYLWNS--ASGEDVLSRKWEVGW 151

BLAST of Lag0033179 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 27  RFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYIR 86
           + S W+V V N +T GET+ IHCKSK++DLG  NL+     +W F EN+L STLFWCY+ 
Sbjct: 37  KISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMS 96

Query: 87  NQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIYQRNKNRVDNKFFLRAKWEPGW 145
               H++++VF  +D  L++RC    CVW+ ++DG+Y  N      +  L  KW+ GW
Sbjct: 97  KDDGHMNVKVF-WDDVILFHRCDWKNCVWTAKNDGLYLWNS--AIGEDVLSEKWKSGW 151

BLAST of Lag0033179 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-10
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 26  FRFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYI 85
           F  S   V + N++ N  T+L HCKSKDDDLG   L+ G+  ++ F       TL++C  
Sbjct: 43  FPTSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSF 102

Query: 86  RNQHDHVSLEVF-NAEDYNLYYRCKGLECVWSIRDDG 122
              ++  S +++ +  D     +C+   CVW IR +G
Sbjct: 103 SWPNESHSFDIYKDHRDSGGDNKCESDRCVWKIRRNG 139

BLAST of Lag0033179 vs. ExPASy Swiss-Prot
Match: Q40975 (Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-10
Identity = 31/95 (32.63%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 33  VRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWCYIR----NQ 92
           VR+ N   NG ++ IHC+SKD+DL    +  G ++++ FRE+   +T F+C ++     +
Sbjct: 26  VRIMNRRGNGRSIGIHCRSKDNDLQNQTVTSGHDMSFSFREDFFHTTHFYCDLQWDKETK 85

Query: 93  HDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIY 124
               S +    +D     RC   +C+W I DDG+Y
Sbjct: 86  FGFYSYQAKRDDD----GRCSS-QCLWKIMDDGLY 115

BLAST of Lag0033179 vs. ExPASy Swiss-Prot
Match: Q9FI84 (S-protein homolog 27 OS=Arabidopsis thaliana OX=3702 GN=SPH27 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 0

Query: 24  FSFRFSPWRVRVFNNMTNGETVLIHCKSKDDDLGQHNLEVGKELTWGFRENILSSTLFWC 83
           F  R    R+ V NN  N   + IHCKSKDDDLG H  + G+   W F  N  +STL++C
Sbjct: 40  FPIRGPLTRITVKNN--NDYLLGIHCKSKDDDLGFHIHKEGELYGWKFHVNFQNSTLYFC 99

Query: 84  -YIRNQHDHVSLEVFNAEDYNLYYRCKGLECVWSIRDDGIY 124
            + + Q +    ++  AE    +YRC+   C W+ + D +Y
Sbjct: 100 GFSQGQDNKGVFDIDRAE--RDFYRCR--NCTWNAKKDSLY 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023532937.13.2e-4258.45S-protein homolog 1-like [Cucurbita pepo subsp. pepo][more]
XP_022931006.13.2e-4257.75S-protein homolog 1-like [Cucurbita moschata][more]
XP_016900393.14.2e-4269.17PREDICTED: pumilio homolog 15-like, partial [Cucumis melo][more]
XP_018469931.19.4e-2644.07PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108841669 [Raphanus s... [more]
KAG2241623.19.4e-2644.92hypothetical protein Bca52824_090196 [Brassica carinata][more]
Match NameE-valueIdentityDescription
F4JLS01.2e-2643.22S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1[more]
Q2HQ462.2e-2543.22S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1[more]
F4JLQ55.7e-1032.99S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1[more]
Q409759.8e-1032.63Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1[more]
Q9FI841.3e-0936.63S-protein homolog 27 OS=Arabidopsis thaliana OX=3702 GN=SPH27 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 33..131
e-value: 1.4E-25
score: 89.8
IPR010264Plant self-incompatibility S1PANTHERPTHR31232FAMILY NOT NAMEDcoord: 28..129
NoneNo IPR availablePANTHERPTHR31232:SF60SUBFAMILY NOT NAMEDcoord: 28..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033179.1Lag0033179.1mRNA