Lag0033177 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033177
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich protein 5-like
Locationchr11: 41459058 .. 41459402 (+)
RNA-Seq ExpressionLag0033177
SyntenyLag0033177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAAAGCTCAATGTCATGCTGGTTTTGGCTGTGGCTATGGCTGCATTTGCAACCCATATTGCTGCAAGAACTGCCCCAAATGATGGGGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCTATGGTGGGGTTGGAGGCTTCTCCGGCATCGGTGACGGAGGACTACCCTTTGGAGGGCTCGGAGGGGGCGGTGGCTCAGGCGGGCTCGGCGGTGGCATTGGCGGGGGTGGTATCGGTATCGGAGGTGGAGTTGGCGGGGGTGTGCTCGGTGGGATTGGCGGGATTGGTGGAATTGGCGGGATTGGTGGCGGGGGTGGATTTGTTAAGCTTCCTTGA

mRNA sequence

ATGGCGAAAAAGCTCAATGTCATGCTGGTTTTGGCTGTGGCTATGGCTGCATTTGCAACCCATATTGCTGCAAGAACTGCCCCAAATGATGGGGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCTATGGTGGGGTTGGAGGCTTCTCCGGCATCGGTGACGGAGGACTACCCTTTGGAGGGCTCGGAGGGGGCGGTGGCTCAGGCGGGCTCGGCGGTGGCATTGGCGGGGGTGGTATCGGTATCGGAGGTGGAGTTGGCGGGGGTGTGCTCGGTGGGATTGGCGGGATTGGTGGAATTGGCGGGATTGGTGGCGGGGGTGGATTTGTTAAGCTTCCTTGA

Coding sequence (CDS)

ATGGCGAAAAAGCTCAATGTCATGCTGGTTTTGGCTGTGGCTATGGCTGCATTTGCAACCCATATTGCTGCAAGAACTGCCCCAAATGATGGGGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCGGCTATGGTGGGGTTGGAGGCTTCTCCGGCATCGGTGACGGAGGACTACCCTTTGGAGGGCTCGGAGGGGGCGGTGGCTCAGGCGGGCTCGGCGGTGGCATTGGCGGGGGTGGTATCGGTATCGGAGGTGGAGTTGGCGGGGGTGTGCTCGGTGGGATTGGCGGGATTGGTGGAATTGGCGGGATTGGTGGCGGGGGTGGATTTGTTAAGCTTCCTTGA

Protein sequence

MAKKLNVMLVLAVAMAAFATHIAARTAPNDGAKGLNDQKNFLGYGGVGGFSGIGDGGLPFGGLGGGGGSGGLGGGIGGGGIGIGGGVGGGVLGGIGGIGGIGGIGGGGGFVKLP
Homology
BLAST of Lag0033177 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-22
Identity = 92/119 (77.31%), Postives = 99/119 (83.19%), Query Frame = 0

Query: 4   KLNVMLVLAVAMAAFATHIAARTAPND-GAKGLNDQKNFLGYGGVGGFSGIGDGGLPF-- 63
           KLN+MLV+A+AMAAFA H+ ART PND  AKGLNDQKNFL YGGVGGFSGIGD GLPF  
Sbjct: 5   KLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGG 64

Query: 64  ----GGLGGGGGSGGLGGGIGG-GGIGIGGGVGGGVLGGIGGIGGIGGIGGGGGFVKLP 115
               GGLGGGGG GGLGGGIGG GG+GI GG+GGGV GG+  IGGIGGIGGGGG VKLP
Sbjct: 65  GIGGGGLGGGGGLGGLGGGIGGFGGVGI-GGIGGGVGGGV--IGGIGGIGGGGGLVKLP 120

BLAST of Lag0033177 vs. NCBI nr
Match: XP_008447334.1 (PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-like [Cucumis melo var. makuwa] >TYJ97692.1 acanthoscurrin-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 91/118 (77.12%), Postives = 99/118 (83.90%), Query Frame = 0

Query: 4   KLNVMLVLAVAMAAFATHIAARTAPNDGAKGLNDQKNFLGYGGVGGFSGIGDGGLPF--- 63
           KLN+MLV+  AMAA A H+AARTAPN+ AKGLNDQKNFL YGGVGGFSGIGDGGLPF   
Sbjct: 5   KLNLMLVM--AMAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFGGG 64

Query: 64  ---GGLGGGGGSGGLGGGIGG-GGIGIGGGVGGGVLGGIGGIGGIGGIGGGGGFVKLP 115
              GGLGGGGG GGLGGG+GG GG+GI GG+GGGV GG+  IGGIGGIGGGGG VKLP
Sbjct: 65  FGGGGLGGGGGLGGLGGGVGGFGGVGI-GGIGGGVGGGV--IGGIGGIGGGGGLVKLP 117

BLAST of Lag0033177 vs. NCBI nr
Match: XP_038887967.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-20
Identity = 85/120 (70.83%), Postives = 94/120 (78.33%), Query Frame = 0

Query: 4   KLNVMLVLAVAMAAFATHIAARTAPNDGAKGLNDQKNFLGYGGVGGFSGIGDGGLPF--- 63
           KLN+MLV+  AMAAFA H+AARTAPN+  KGLNDQKNFL YGG+GG  GIGD GLPF   
Sbjct: 5   KLNLMLVM--AMAAFAVHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGGIGDSGLPFGGG 64

Query: 64  -----GGLGGGGGSGGLGGGIGG-GGIGIGGGVGGGVLGGIGGIGGIGGIGGGGGFVKLP 115
                GGLGGGGG GGLGGGIGG GG+GI GG+GGG+ GG+     IGGIGGGGGFVKLP
Sbjct: 65  GGIGGGGLGGGGGLGGLGGGIGGVGGVGI-GGIGGGIGGGV-----IGGIGGGGGFVKLP 116

BLAST of Lag0033177 vs. NCBI nr
Match: XP_022963787.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 1   MAKKLNVMLVLAVAMAAFATHIAARTAPNDGAKGLNDQKNFLGYGGVGGFSGIGDGGLPF 60
           MA KLN+ML++A+AMAAFA H+AARTAP + AKGLNDQKNFLG    GGFSGIGD GLPF
Sbjct: 1   MANKLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLPF 60

Query: 61  GGLGGGGGSGGLGGGIGG-GGIGIGGGVGGGVLGGIGGIGGIGGIGGGGGFVKLP 115
           GGLGGGGG GG+GGG+GG GG+GI         GGIG   G+GG+  GGGFVK+P
Sbjct: 61  GGLGGGGGLGGIGGGLGGFGGVGI---------GGIG--AGVGGV--GGGFVKIP 98

BLAST of Lag0033177 vs. NCBI nr
Match: KAG6571569.1 (putative pectate lyase 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-17
Identity = 77/115 (66.96%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 1   MAKKLNVMLVLAVAMAAFATHIAARTAPNDGAKGLNDQKNFLGYGGVGGFSGIGDGGLPF 60
           MA KLN+ML++A+A+AAFA H+AARTAP + AKGLNDQKNFLG    GGFSGIGD GLPF
Sbjct: 469 MANKLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLPF 528

Query: 61  GGLGGGGGSGGLGGGIGG-GGIGIGGGVGGGVLGGIGGIGGIGGIGGGGGFVKLP 115
           GGLGGGGG GG+GGG+GG GG+GI         GGIG   G+GG+  GGGFVK+P
Sbjct: 529 GGLGGGGGLGGIGGGLGGFGGVGI---------GGIG--AGVGGV--GGGFVKIP 566

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011652144.11.0e-2277.31glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth... [more]
XP_008447334.11.3e-2277.12PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-l... [more]
XP_038887967.14.7e-2070.83acanthoscurrin-1-like [Benincasa hispida][more]
XP_022963787.11.7e-1767.83glycine-rich protein 5-like [Cucurbita moschata][more]
KAG6571569.14.8e-1766.96putative pectate lyase 15, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463GLYCINE-RICH PROTEINcoord: 1..109
NoneNo IPR availablePANTHERPTHR34463:SF11GLYCINE-RICH PROTEINcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033177.1Lag0033177.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane