Lag0033176 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033176
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	TF-B3 domain-containing protein
Location	chr11: 41454267 .. 41458009 (-)
RNA-Seq Expression	Lag0033176
Synteny	Lag0033176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCATGTTTATTTCACAATTTACCTTCGATTTCTTCACACCCTTTAACTCGCCAAAGAATCCCAACCAGTTTTGCTCATTCCCAGTTCCTCACTTCCAAATCCTTGAAACTCAAAAAACAATCGTTCCTCTCAAATTTGCAGATTGAGAAGCCGAGAGCTCGAGGGTCTCCTTCTTTCCCTGTTGTCTATGCTGTTCAGAACAATTTCTTGAGAGGTTAGCTTCGTTTTCTTTCTCTCTTCTTTGCGTTCTTGTTTCTGGTTTCTGATTCTGTTTCAATGCTGTTTTCTAATGGGTTGCTGAAAGTGACATCGTTTCTTTGTTTGTGATCGTTTTCTGATTATTGTTTTTGGTTTTTTTAGTGAAAAAGGAAAATTATGTTTGGTAATTGTATCTTGTTTCTTTCTCATTTGGAAATGTATTTTGTAATTGTTTCTTGTTTCCGTCCATCTGAATGTAGCTCAATAGACATGTATTCTTGATCAAGATGTGAAGTTCGAATTCACACTCCAAATGTTATCGAACCAAAATTTCTTATTTCTTGTTCCCTTAAATCTTAAATTATGAAAATTAGTTCCTTGACAACTTCGGACCAGATTAACCCCTTTGAATTAGCCTAGTTCGGATAAGGTAATCAGTTGGTGCCGGTGTTGGTGTTAGATGATCAATTAATTACACACTGTTAGAGGGGATCGAAGGAGATGTTCTATTATGAAACTCCCTACCAGGTGGCATAAAAGGAGTCTAACGCCTACCCTTTGGCATAATAAATAGTCTAATTACCAATATGAATACATTCGCTAATGCGATTTACGACATTCATGTTCAGAATTGACTCCTGGACTGGCATTCAATTGAATCAACAACAGATGCATCCACGAAAGCTGTTGTGTTTGAAAAATTAAATATCTAAAATTTTTATGTTAGGTTTATTTTTAGATATTTATTATGCATTTTATTAGTTAAGAATGATAAATAATGTTTTTATTTATGATTTGAAAAATAGTGTTTCTAGAAACCATAAACAAGAAACTTAATTTGGTTGTTTCCAAAATTTCCACATAATGGTAGAAACGTTTCTAAAAAATGAAAAACAAGAAATAGAAATAGTTATCTAAACATTTCTGTTTCTACCAGAAACAAAAAACGAGAAATAGAAAAGTTAGGAAACGACCCTAAGAATTTTAATCCATTTTGTGAACTGGAATTAAAGTGGTTGAGTTTCTACCTAAAGGGTCACCATTAGAACTTGTCAAAAGTTTCCATGATACTGTAAATTTGTTATTTTTGGACACCATTATACTGTTTTATAATAACATGGTGAAGTTTTAATTCTGTTGGCAAATTCTATGAAACAGTCTTCCAGACAGTTTGGAAGGTTGGTAAGGATGGGATTGAGGCAGGAACAGACCTGGTACCTGTAAGTTCCCCTGCTTTATCTCCAAACCTCTATCTCAGTTCATTCAACATCAAATAGCAGATGGTTTTCCAGTAGCAAGAAGAAAAAGTTCTAATTGTCCTATTTGTGGCCCTTGTCTTGTAGGACTCTGTACCAAGACCAATAGCAAGGATATCTGTTGCAATAGTTGCATTAACTATTGGACTCTTTTTGCTCAAGTCAGTCCTGTCTACAGCCTTATTTGTGCTGGTATTACATACTCTTACTATTGGACTACTGTTGTTGATTTTACTGTCACTATATGTTTTTTTACGAGATGTCGAATGTCTCGGTATTTTTTGTCGTTTGTACTTACTTGTTCAGGTACCTTTGGTTTTATCAACAAATTTTGTTGTTTTTGTTGTAACTCCAATTGTCTATGGTTGTAGTCTATTATTTCCCATGTTTCATCAACTAGTTAACTGGAAAAGTGGTGTGTGAAAGACTAATTTTTTAGGTGAACCCAACTAGAAAAAGTAGTTTTGACATTTCCCTGATCTCACTTTCCAACCCCTTTCTATCTATAGTATACGACTCCTCCAATTCGTTTTGTTTCATATCGCCTCGAACATTCCTTTTTGAGTTGGTTAAAATCATCTTAGACTTATTCTTGAAAAGAATTTAGTTTTCTCATAGTATCTGCTCTTTCTATTCACACTTAGATACGTAACTAATTAGTATATTTTTTTAATTCATGGACCTTGTACTATTCTTAAATGCTACAGACATGACTAACAATGAATGGTAACATAGAAAATTCGTCATACTACCATAGTATTAGAAAATTTTCTCTTATTCTTGGAAAAGAGACCAACTTCAGGTTGGTAGATATGATCCGCGATATGCCTAGAAACTTAAATCTTTTGCAATCGGCTTCATGTGAGTATCTATGTGTTGACTTACCCACAAGTTGAACAAGATATCACTAAATTTTAGATGGACATGCAAAAAGATATGACTTCTATGAGTAACTGAGTGAATGTTTTCTTTTAAGTATACTGAAATAGGAAAAGAATTTCACCTCCTGAAAGCTTTTGAATTCATATGAAGAGGCTAACATATGACTTACAGGCTACAGCCTATCCCAGCCATTTTGTTACTATTTTTGTACAAGACAGTGTGTTTAAAATGTTTAACCTGAAAATAAATGATGACATGAATAACAATATGATGAGTAAACTGTTGAAAGGTTACAGTATGTTGTGGTTATAGGGTTTGAGAGAATGTTCATGAATGGCAATGAGGGAAAAGTCTACTTAAAAGAAAATTGGGAAGCTGCCAACTGCAACATTGCCTTTCGGGAGGGAGCCTTCAGCTACCAAATCTAGTTCAGTCCCAGATTCCCAGCTTACCTGATCCTAGGCTTCTTTATGGTACAAAAAAAAACCCTTTCATAATTACTAACTCAATGCCATTCTTAGAGACCAACAATAGCACATAGCTTCCCTGCTAGCTAGATCATGTGGTTCCACACATTCCAAGTTCCTCTTTTCACCACTTTATCGTGGATGAAAGCTAGGGGAGCAAATGGGATTAGGTACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGTTGTGCGTATTGACCCGTGAAGTCCTGGAAATTAGTTTTGAATCAAGTTAGAGGCTCCTGAGAGTTTTCCGATGCTTCTAGGCCCTTCCACATGATCGAAAAATTTTAACAGGGTCCTTCCCTGATTGCCTTATTGGCAATTCTTTCTTGCACCTATGGCCTTGCAAAGTTACAAGATGCGAATGACTAGATGGATAATGGCAGTAGGTAGCAAATTCAATCTATATGCACCTATGGCCTAGCAAAGTTATGGATAATTGCATATGCCATATAACATTTATTTATAGAAGTCTTCTGAGTTCTGCAGTCTGCACTCAACTTTTTGTTTCATTATCAAGTGTGGGACGATCGATCATTTGCAACTCATGATGGTTGGTAGTGAGAATTTTAGCCACTGAATCATTTTCCCTAGTAGTGCTTAAATCTGGTGATTGACTTGAAAAGGAATATCTTTACTTGTTTTCTGATTGCCTGATCATGGAACTGTTTCGTTCGATGATAACTACATTGAAGTTATCTTGCTTGCAATCAATTAAGTACAAACTTACTGAACAAAGGATTGTATGGATGCAGGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGAAGGGCCAAGAGGAGGTGGAGGCTCCTCCTCTTCCTCCACAACCTCAACAGAGGAGACTCTTGAAGAAGCCAGAAGAATAATGGAGAAGTACAAGTAG

mRNA sequence

ATGGCTTCTTCATGTTTATTTCACAATTTACCTTCGATTTCTTCACACCCTTTAACTCGCCAAAGAATCCCAACCAGTTTTGCTCATTCCCAGTTCCTCACTTCCAAATCCTTGAAACTCAAAAAACAATCGTTCCTCTCAAATTTGCAGATTGAGAAGCCGAGAGCTCGAGGGTCTCCTTCTTTCCCTGTTGTCTATGCTGTTCAGAACAATTTCTTGAGAGTCTTCCAGACAGTTTGGAAGGTTGGTAAGGATGGGATTGAGGCAGGAACAGACCTGGTACCTGACTCTGTACCAAGACCAATAGCAAGGATATCTGTTGCAATAGTTGCATTAACTATTGGACTCTTTTTGCTCAAGTCAGTCCTGTCTACAGCCTTATTTGTGCTGGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGAAGGGCCAAGAGGAGGTGGAGGCTCCTCCTCTTCCTCCACAACCTCAACAGAGGAGACTCTTGAAGAAGCCAGAAGAATAATGGAGAAGTACAAGTAG

Coding sequence (CDS)

ATGGCTTCTTCATGTTTATTTCACAATTTACCTTCGATTTCTTCACACCCTTTAACTCGCCAAAGAATCCCAACCAGTTTTGCTCATTCCCAGTTCCTCACTTCCAAATCCTTGAAACTCAAAAAACAATCGTTCCTCTCAAATTTGCAGATTGAGAAGCCGAGAGCTCGAGGGTCTCCTTCTTTCCCTGTTGTCTATGCTGTTCAGAACAATTTCTTGAGAGTCTTCCAGACAGTTTGGAAGGTTGGTAAGGATGGGATTGAGGCAGGAACAGACCTGGTACCTGACTCTGTACCAAGACCAATAGCAAGGATATCTGTTGCAATAGTTGCATTAACTATTGGACTCTTTTTGCTCAAGTCAGTCCTGTCTACAGCCTTATTTGTGCTGGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGAAGGGCCAAGAGGAGGTGGAGGCTCCTCCTCTTCCTCCACAACCTCAACAGAGGAGACTCTTGAAGAAGCCAGAAGAATAATGGAGAAGTACAAGTAG

Protein sequence

MASSCLFHNLPSISSHPLTRQRIPTSFAHSQFLTSKSLKLKKQSFLSNLQIEKPRARGSPSFPVVYAVQNNFLRVFQTVWKVGKDGIEAGTDLVPDSVPRPIARISVAIVALTIGLFLLKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSSTTSTEETLEEARRIMEKYK

Homology

[Close]

BLAST of Lag0033176 vs. NCBI nr
Match: XP_004152015.1 (uncharacterized protein LOC101207451 isoform X1 [Cucumis sativus] >KAE8650842.1 hypothetical protein Csa_017556 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 3.3e-73
Identity = 155/178 (87.08%), Postives = 158/178 (88.76%), Query Frame = 0


Query: 1   MASSCLFHNLPSISSHPLTRQRIPTSFAHSQFLTSKSLKLKKQSFLSNLQIEKPRARGSP 60
           MASSCLFHN PSIS HPLTR R PT   HSQ L   SLKLK+QSFL N QIEK R RGSP
Sbjct: 1   MASSCLFHNFPSISGHPLTRHRNPTISLHSQILPLNSLKLKEQSFLFNPQIEKLRTRGSP 60

Query: 61  SFPVVYAVQNNFLRVFQTVWKVGKDGIEAGTDLVPDSVPRPIARISVAIVALTIGLFLLK 120
           SFP+VYA QNNFLRVFQTVWK+GKDGIEAGTDLVPDSVPRPIARISV IVALTIGLFL K
Sbjct: 61  SFPLVYAAQNNFLRVFQTVWKIGKDGIEAGTDLVPDSVPRPIARISVGIVALTIGLFLFK 120

Query: 121 SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSSTTSTEETLEEARRIMEKYK 179
           SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGG SSSS TSTEETLEEARRIMEKYK
Sbjct: 121 SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGG-SSSSPTSTEETLEEARRIMEKYK 177

[Close]

BLAST of Lag0033176 vs. NCBI nr
Match: XP_008447333.1 (PREDICTED: uncharacterized protein LOC103489804 [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 5.3e-71
Identity = 153/179 (85.47%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 1   MASSCLFHNLPSISSHPLTRQRIPTSFAHSQFLTSKSLKLKKQSFLSNLQIEKPRARGSP 60
           MASSCLFHN PSIS+HPLTR R PT   HSQFL   SLKLKKQS     QIEK RARGSP
Sbjct: 1   MASSCLFHNFPSISAHPLTRHRNPTISLHSQFLPLNSLKLKKQS-----QIEKLRARGSP 60

Query: 61  SFPVVYAVQNNFLRVFQTVWKVGKDGIEAGTDLVPDSVPRPIARISVAIVALTIGLFLLK 120
           SFP+VYA QNNFLRVFQTVWK+GKDGIEAGTDLVP SVPRPIARISV IVAL IGLFL K
Sbjct: 61  SFPLVYAAQNNFLRVFQTVWKIGKDGIEAGTDLVPGSVPRPIARISVGIVALAIGLFLFK 120

Query: 121 SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGG-SSSSSTTSTEETLEEARRIMEKYK 179
           S+LSTALFVLAMMGAIYFIFIALNKDEGPRGGGG SSSSS+TSTEETLEEARRIMEKYK
Sbjct: 121 SILSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSSSSTSTEETLEEARRIMEKYK 174

[Close]

BLAST of Lag0033176 vs. NCBI nr
Match: XP_023532771.1 (uncharacterized protein LOC111794841 [Cucurbita pepo subsp. pepo] >XP_023532772.1 uncharacterized protein LOC111794841 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.7 bits (709), Expect = 6.9e-71
Identity = 151/178 (84.83%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MASSCLFHNLPSISSHPLTRQRIPTSFAHSQFLTSKSLKLKKQSFLSNLQIEKPRARGSP 60
           MASSCLFHNLPSISSHPL R R  T FAHSQFL   SLKL+KQSFLSN +I K R R S 
Sbjct: 1   MASSCLFHNLPSISSHPLERHRNSTIFAHSQFLPLNSLKLRKQSFLSNSRIGKLRTRSSD 60

Query: 61  SFPVVYAVQNNFLRVFQTVWKVGKDGIEAGTDLVPDSVPRPIARISVAIVALTIGLFLLK 120
           SFPVVYA QNNFLRVFQTVWKVGKDGIEAGTDLVP+SVPRP+ARISVAI AL+IGLFLLK
Sbjct: 61  SFPVVYAAQNNFLRVFQTVWKVGKDGIEAGTDLVPNSVPRPVARISVAIAALSIGLFLLK 120

Query: 121 SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSSTTSTEETLEEARRIMEKYK 179
           SVLSTA FVLAM+GAIYFIFIALNKDEGPRGGGG S+SST STEETLEEAR+IMEKYK
Sbjct: 121 SVLSTAAFVLAMVGAIYFIFIALNKDEGPRGGGG-SASSTASTEETLEEARKIMEKYK 177

[Close]

BLAST of Lag0033176 vs. NCBI nr
Match: XP_038887965.1 (uncharacterized protein LOC120077928 [Benincasa hispida] >XP_038887966.1 uncharacterized protein LOC120077928 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-70
Identity = 151/179 (84.36%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 1   MASSCLFHNLPSISSHPLTRQRIPTSFAHSQFLTSKSLKLKKQSFLSNLQIEKPRARGSP 60
           MASSCLFHN PSIS+HPLTR R      HSQFL S SLKLKKQSFL N +I K R RGSP
Sbjct: 1   MASSCLFHNFPSISAHPLTRHRNTPISLHSQFLPSNSLKLKKQSFLLNPKIGKLRTRGSP 60

Query: 61  SFPVVYAVQNNFLRVFQTVWKVGKDGIEAGTDLVPDSVPRPIARISVAIVALTIGLFLLK 120
           SF +VYA QNNFLRVFQTVWKVGKDGIEAGTDL+PDSVPRPIARISV +VALTIGLFL K
Sbjct: 61  SFTLVYAAQNNFLRVFQTVWKVGKDGIEAGTDLLPDSVPRPIARISVGMVALTIGLFLFK 120

Query: 121 SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSST-TSTEETLEEARRIMEKYK 179
           S+LSTALFVLAMMGAIYFIFIALNKDEGPRG GGSSSSS+ TSTEETLEEARRIMEKYK
Sbjct: 121 SILSTALFVLAMMGAIYFIFIALNKDEGPRGDGGSSSSSSPTSTEETLEEARRIMEKYK 179

[Close]

BLAST of Lag0033176 vs. NCBI nr
Match: XP_022159605.1 (uncharacterized protein LOC111025970 [Momordica charantia])

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-70
Identity = 150/178 (84.27%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 1   MASSCLFHNLPSISSHPLTRQRIPTSFAHSQFLTSKSLKLKKQSFLSNLQIEKPRARGSP 60
           MASS LFHN  SIS HP  R R P  F HSQFL   SLKLKKQS  SN QI K  ARGSP
Sbjct: 1   MASSSLFHNFSSISPHPSIRHRNPPIFPHSQFLPPNSLKLKKQSLFSNSQIRKLTARGSP 60

Query: 61  SFPVVYAVQNNFLRVFQTVWKVGKDGIEAGTDLVPDSVPRPIARISVAIVALTIGLFLLK 120
           SFP+VYA QNNFLRVFQTVWK+GKDGIEAGT LVPDSVPRPIARISVAIVA TI LFLLK
Sbjct: 61  SFPLVYAAQNNFLRVFQTVWKIGKDGIEAGTGLVPDSVPRPIARISVAIVASTIALFLLK 120

Query: 121 SVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSSTTSTEETLEEARRIMEKYK 179
           SVLSTALFVLAMMGAIYF+FIALNKDEGPRGGGGS SSSTTSTEETLEEARRIMEKYK
Sbjct: 121 SVLSTALFVLAMMGAIYFVFIALNKDEGPRGGGGSPSSSTTSTEETLEEARRIMEKYK 178

The following BLAST results are available for this feature:

BLAST of Lag0033176 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152015.1	3.3e-73	87.08	uncharacterized protein LOC101207451 isoform X1 [Cucumis sativus] >KAE8650842.1 ...	[more]
XP_008447333.1	5.3e-71	85.47	PREDICTED: uncharacterized protein LOC103489804 [Cucumis melo]	[more]
XP_023532771.1	6.9e-71	84.83	uncharacterized protein LOC111794841 [Cucurbita pepo subsp. pepo] >XP_023532772....	[more]
XP_038887965.1	1.5e-70	84.36	uncharacterized protein LOC120077928 [Benincasa hispida] >XP_038887966.1 unchara...	[more]
XP_022159605.1	1.5e-70	84.27	uncharacterized protein LOC111025970 [Momordica charantia]	[more]

BLAST of Lag0033176 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..178
None	No IPR available	PANTHER	PTHR36777	EXPRESSED PROTEIN	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033176.1	Lag0033176.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane