Lag0033169 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033169
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
Locationchr11: 41373353 .. 41376502 (+)
RNA-Seq ExpressionLag0033169
SyntenyLag0033169
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAACAATCCTTCGCAGCTGCTGCCCTCAGGTTCGCTTCTCCTTCTCCTTCGCTTTATTTCTCATTTCCTCCTCCTATTTCGCTGTAAAATGAACTCTAATTCACTGGGTTTCTTGGTGGGAATTTGCAGAGTTGATCGACCGATGCATTGGCTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTCTATGTCAACATGGTTCTTGAAGATGTCACTGAATAGTAAGGGCCTCTTTGAGAATTGCAAGATCTAAAGTCGTTTTTCTTTGGTTTCCTCATGTGGGTTGTGTTTGTTTTGTATCTTGCATGATTTTTTTTGTTTCGGTCTGTTCTGTTTGTTCAATGTCTTCTACAAAGTGTTCGATGTGACGATTTTAGTGTTGGAGAATCTGAGGCGAGTAGAAGAAAGTATTAGGCTCAATGTTTCATTTGTCTGCGTTTATGGGATTGAAAACATGATTTAAGTGAGAGGGAAAGTTGCGCTAGAGCAACTGGGTATGGGATTATTGAGTATGCAATTTCCATTTCATTGAATCTGTTTGTTGTTCTCTAGTCTTAGGATGGGATTGGGGTTGGAGGTTGGATTTGGAGAGCTTTTGAGTTAAGGTTTGGAAATCCATTTGTTCAAATTTTCAAAGGGAACTGGACTGTGGAGGTTTCTTCAGAAGTTAAAGAAAGTGATTCATAATCTCATGCCATATCGAAATAGGAGGAAAATAGTTGACAAGAGGAGGAGGATTGCCATATCCATGTCCTGTTTTTGCTGAGATTTCATTGATGGAGGTAAGGTAAAATAGAGTAATAGAGGAGAGAGGCTTGCCATCTGCATGTCCTGTTTTCTCAAAATCTCTCGTAAAGTAGAAGGAAAAAGTTGGTTTAAGAGTGTGAAGAACTGCCATGCCTTCGTTGATACACATTTCTTTGTTAATTATTGGGTTTTTTTTCCTTTCCACTCCTGATTTTCAACAAATTAGGGGCCAGTTGTCATGCTATACGTGATGTTTATTGTGCTTATCTTTCCCTTTTCTAGTTGTAGACCTAGCAGATTATTGTTTGCTTTTCTCTTCTGTGGACTGGTTATGGATATATTTGAGATTCAAACTTCATAACAGATTGGTAAGGTCATAGTTGGGCATCAAGTTAGGAATATGATGATCATAATGTTTTAATTAACTCATCATTAGGATTGTTCTTTTATCTTTCATCCGATGTAACTTTATTTTCTTATTAAATATTTGAAAATTGACTTGAATTCTTTGTTCCTGACAACAGGAGTAACGTTTTGGTAAGTACACTAGGAGTAATATGAAAATTTTTCTTTGCTTTTGATCTTAGATTGACCCCCTTTTCCAATTTACTTATCATTCAAGCTTTTTATAGAACTTGTTTCAGCGCATTTCTGTTGTTCAGTACTGGGTTAATATGGATATCTTTTTTGAACAAGAAACAAGAATTCATTCTATCACGGGTGGCTCCATAAAGCCTACAACTTAAAAGTAGACTTAGGAAGAGAAGAAAAAACCCATAAAGAAATACCCGAAACACAATCCTGAAAAGGAAAATCCCTTAAGCCCTTTCAAGAAAGCCCCCCAATTGAATAAATATCATTAAGAGATTGAAGTGGTCATAAGCAATGTTTTAAAAGGCTAAAGGCAGCCTCGAGGCTTTTCCTCCTGAAGAGGCGAGGCGCAAGCCTCGAGGCGGTGTGAGGCATAAGCCTCAATTTTAATTAAAAACATTACGTAAATCCTAAATTTGTGTAAACAAGTAATGCTGAACATAATACTTATAAAAAAGTATAGAAAAAGTCAGGCCCCTTGAATTGCTACTTGAACAAAAATTCTACAAATACATCTTTAACATCACTACTATTATCACTTATACGATTGATTTATTCTATAAATTATTATTTTCAATGTTTTTAAAGCCTAAGTGGTAAAAGTGGTAATATTTTAAATTGTAACAACTCAAACAAATGGGGAAATCAATACTATTATTCTAACCATTATATGAGGCGTAGAGACTTTAAGCCTCAGTGCGTTTTTATAAAGGCGTAAGCCTCTTATGGTCCAAAGAAGGCGTAAGTCTCGAGGCTAAAAGTTAGAAATTCGCCTCGAGGCGAGCCTCAAGGCGTAAGCCTCAATAGCCTTTTAAAACATTGGTCATAAGTTCATATTCTTCTTTAGTTTAAACTGTTTCATTCTCTCACGGGTGGCTCCATAAAGCCTACGGCTAAATTATAATTAACCAATACACGATCCATTCGACAAGAGTACTTGTAGATGGAGCTAATATCCCCATTGCTTATTTTTGTTTCTGTTCTACAAATCAAAATCTAGGGTGTGCTCTTTTGGGCCTGAACTCCCTATCTTGGCACATCTTTTATGCTTGTGGCGTGCCTTAGCTGCTGTCTTTTTATGCACCTAATGACTCATTGTTTTAATAAAAACTCACAGCTCTGTCCACAATTTACTATATGGTTTAACACTCTCTGTATTACATTGTAGTGAGATCACGGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTAAATGGAAACAACATTGCTATTGTAAGTGACAATCACAGTTTTAGTGTTTACATGCACTTGTTTGGGGAAGCTACAAGTCTATGGACGATCTCCGGATCAATGAACTATAATTTTGTAAGAGGCCAAGCTTCATGATGGCATAATAGTAATTTAAGGAGACCATCATTGTTTGTCCCAATGATTAAATAGTCAGAGTCCTAAATTTACGTGCCTTCTATGTCATTCGCAAGTTGTTTCGTGAGACTAGTCAACGTGTGAGTAAGTTAGCGTGGATGTTCTTTAAAATTAGTCGATATCCTTGTGAGCTCATCTAGACAAACTGAGGGGGAATAGGTAGAGAACTCGGGCTGAATGTTGTAGGGCCGAATAGTTGTCCATGAGATTAACCATATAAGGTGGTTCAATTGTCCTTCAAGATTATTCAATGTACATGTAAGTTGGTCTAGGTGTTAGCTCATCTAGTTTAACTAGAGGTTCTTATTAACGCCTGATTGTTGAAGCACATTGTTTGTTTGTTTGCAGCTCGTCCCCGGTGGATCGCCCGACCCGGAATAA

mRNA sequence

ATGGCTAACAATCCTTCGCAGCTGCTGCCCTCAGAGTTGATCGACCGATGCATTGGCTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTCTATGTCAACATGGTTCTTGAAGATGTCACTGAATATGAGATCACGGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTAAATGGAAACAACATTGCTATTCTCGTCCCCGGTGGATCGCCCGACCCGGAATAA

Coding sequence (CDS)

ATGGCTAACAATCCTTCGCAGCTGCTGCCCTCAGAGTTGATCGACCGATGCATTGGCTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTCTATGTCAACATGGTTCTTGAAGATGTCACTGAATATGAGATCACGGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTAAATGGAAACAACATTGCTATTCTCGTCCCCGGTGGATCGCCCGACCCGGAATAA

Protein sequence

MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Homology
[Close]
BLAST of Lag0033169 vs. NCBI nr
Match: XP_004504703.1 (sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jatropha curcas] >XP_013457335.1 sm-like protein LSM5 [Medicago truncatula] >XP_015575945.1 sm-like protein LSM5 [Ricinus communis] >XP_015957485.1 sm-like protein LSM5 [Arachis duranensis] >XP_016190536.1 sm-like protein LSM5 [Arachis ipaensis] >XP_016708763.1 sm-like protein LSM5 [Gossypium hirsutum] >XP_017648195.1 PREDICTED: sm-like protein LSM5 [Gossypium arboreum] >XP_017970003.1 PREDICTED: sm-like protein LSM5 [Theobroma cacao] >XP_021274360.1 sm-like protein LSM5 [Herrania umbratica] >XP_021631942.1 sm-like protein LSM5 [Manihot esculenta] >XP_021683952.1 sm-like protein LSM5 [Hevea brasiliensis] >XP_022159125.1 sm-like protein LSM5 [Momordica charantia] >XP_022758624.1 sm-like protein LSM5 [Durio zibethinus] >XP_022930959.1 sm-like protein LSM5 [Cucurbita moschata] >XP_022995599.1 sm-like protein LSM5 [Cucurbita maxima] >XP_023532583.1 sm-like protein LSM5 [Cucurbita pepo subsp. pepo] >XP_023923008.1 sm-like protein LSM5 [Quercus suber] >XP_023923009.1 sm-like protein LSM5 [Quercus suber] >XP_023923155.1 sm-like protein LSM5 [Quercus suber] >XP_025639691.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639692.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025691321.1 sm-like protein LSM5 [Arachis hypogaea] >XP_027348492.1 sm-like protein LSM5 [Abrus precatorius] >XP_030933673.1 sm-like protein LSM5 [Quercus lobata] >XP_030933674.1 sm-like protein LSM5 [Quercus lobata] >XP_030936832.1 sm-like protein LSM5 [Quercus lobata] >XP_038681479.1 sm-like protein LSM5 [Tripterygium wilfordii] >XP_038681480.1 sm-like protein LSM5 [Tripterygium wilfordii] >XP_038724027.1 sm-like protein LSM5 isoform X2 [Tripterygium wilfordii] >XP_038887865.1 sm-like protein LSM5 [Benincasa hispida] >XP_039005698.1 sm-like protein LSM5 [Hibiscus syriacus] >XP_039031317.1 sm-like protein LSM5 [Hibiscus syriacus] >KAB2057077.1 hypothetical protein ES319_A11G146100v1 [Gossypium barbadense] >KAF3966647.1 hypothetical protein CMV_009271 [Castanea mollissima] >KAG6606325.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. sororia] >OMO51904.1 hypothetical protein COLO4_37469 [Corchorus olitorius] >OMO99889.1 hypothetical protein CCACVL1_03561 [Corchorus capsularis] >TYG94013.1 hypothetical protein ES288_A11G155800v1 [Gossypium darwinii] >TYI00748.1 hypothetical protein ES332_A11G155300v1 [Gossypium tomentosum] >TYJ09550.1 hypothetical protein E1A91_A11G149100v1 [Gossypium mustelinum] >GAU40652.1 hypothetical protein TSUD_83300 [Trifolium subterraneum])

HSP 1 Score: 179.9 bits (455), Expect = 9.6e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 88
          RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Lag0033169 vs. NCBI nr
Match: KAG7036265.1 (Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 9.6e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91

Query: 61  RITKLDQILLNGNNIAILVPGGSPDPE 88
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 92  RITKLDQILLNGNNIAILVPGGSPDPE 118

[Close]
BLAST of Lag0033169 vs. NCBI nr
Match: ADR71256.1 (U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 88
          RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Lag0033169 vs. NCBI nr
Match: KAA8550650.1 (hypothetical protein F0562_002334 [Nyssa sinensis])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 88
          RITKLDQILLNGNNIA+LVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAVLVPGGSPDPE 87

[Close]
BLAST of Lag0033169 vs. NCBI nr
Match: XP_021659196.1 (sm-like protein LSM5 [Hevea brasiliensis])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 25  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 84

Query: 61  RITKLDQILLNGNNIAILVPGGSPDPE 88
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 85  RITKLDQILLNGNNIAILVPGGSPDPE 111

[Close]
BLAST of Lag0033169 vs. ExPASy Swiss-Prot
Match: Q9FKB0 (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-41
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPD 86
          R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]
BLAST of Lag0033169 vs. ExPASy Swiss-Prot
Match: Q2HJH0 (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPGG 83
          KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Lag0033169 vs. ExPASy Swiss-Prot
Match: Q9Y4Y9 (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPGG 83
          KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Lag0033169 vs. ExPASy Swiss-Prot
Match: P62322 (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPGG 83
          KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Lag0033169 vs. ExPASy Swiss-Prot
Match: Q5R628 (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPGG 83
          KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

The following BLAST results are available for this feature:
BLAST of Lag0033169 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004504703.19.6e-42100.00sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jat... [more]
KAG7036265.19.6e-42100.00Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
ADR71256.11.3e-4198.85U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis][more]
KAA8550650.11.3e-4198.85hypothetical protein F0562_002334 [Nyssa sinensis][more]
XP_021659196.11.3e-4198.85sm-like protein LSM5 [Hevea brasiliensis][more]
BLAST of Lag0033169 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FKB01.3e-4195.29Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1[more]
Q2HJH02.7e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3[more]
Q9Y4Y92.7e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV... [more]
P623222.7e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S... [more]
Q5R6282.7e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 12..80
e-value: 8.0E-21
score: 85.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 13..80
e-value: 1.5E-20
score: 72.7
NoneNo IPR availableGENE3D2.30.30.100coord: 9..85
e-value: 1.5E-26
score: 93.9
NoneNo IPR availablePANTHERPTHR20971:SF4U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5coord: 1..87
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 1..87
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 7..82
e-value: 2.43194E-51
score: 153.554
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033169.1Lag0033169.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0120115 Lsm2-8 complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding