Lag0033142 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033142
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSeed nucellus-specific protein
Locationchr11: 41171564 .. 41172103 (+)
RNA-Seq ExpressionLag0033142
SyntenyLag0033142
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAACCCATTGATCTTTTTACTCAAAATGGTTACCTGATTTCCATTGTTGCCTATAAATTTGGAGGCCTGCAAAGCATTTTCACTCACACAGAAAAAAGACAGAGAGAAAAGAAAGAGAAGATGATGATCGGTAAAGCTCTCGTCGCCATGCTCTCAGTCTCTGCAATGACGATGGCGTTTCTGCAGAATGTTGAAGGAGGAAGAGACATGGCCCTGAAAGAAGCAAAACCTCACAATCCTCAGATTTTCAATGAAAATTTGGGGTACAGATCCAAGGAGGAATATGACTGTGAAGGATACAAATACAAAGATAGAGACTGCTACAATTATGGCACCTGTGACAAAACCAGGGAGGAATGTGACTGTGATGAATACAAAAACAAGGATGGAGACTGCTATGAATATGGCAACTGTGACAAATCCCCCTACCATGAGGATGGCGATCATCAGTACAACTGGAATTCCTACAAGAAACAGGTGCCGGAGTCGAAAGAGGTGGCCGGAAAGTATGGAGTCCACCAGAAGTACCCCTGA

mRNA sequence

ATGCAGAAACCCATTGATCTTTTTACTCAAAATGGTTACCTGATTTCCATTGTTGCCTATAAATTTGGAGGCCTGCAAAGCATTTTCACTCACACAGAAAAAAGACAGAGAGAAAAGAAAGAGAAGATGATGATCGGTAAAGCTCTCGTCGCCATGCTCTCAGTCTCTGCAATGACGATGGCGTTTCTGCAGAATGTTGAAGGAGGAAGAGACATGGCCCTGAAAGAAGCAAAACCTCACAATCCTCAGATTTTCAATGAAAATTTGGGGTACAGATCCAAGGAGGAATATGACTGTGAAGGATACAAATACAAAGATAGAGACTGCTACAATTATGGCACCTGTGACAAAACCAGGGAGGAATGTGACTGTGATGAATACAAAAACAAGGATGGAGACTGCTATGAATATGGCAACTGTGACAAATCCCCCTACCATGAGGATGGCGATCATCAGTACAACTGGAATTCCTACAAGAAACAGGTGCCGGAGTCGAAAGAGGTGGCCGGAAAGTATGGAGTCCACCAGAAGTACCCCTGA

Coding sequence (CDS)

ATGCAGAAACCCATTGATCTTTTTACTCAAAATGGTTACCTGATTTCCATTGTTGCCTATAAATTTGGAGGCCTGCAAAGCATTTTCACTCACACAGAAAAAAGACAGAGAGAAAAGAAAGAGAAGATGATGATCGGTAAAGCTCTCGTCGCCATGCTCTCAGTCTCTGCAATGACGATGGCGTTTCTGCAGAATGTTGAAGGAGGAAGAGACATGGCCCTGAAAGAAGCAAAACCTCACAATCCTCAGATTTTCAATGAAAATTTGGGGTACAGATCCAAGGAGGAATATGACTGTGAAGGATACAAATACAAAGATAGAGACTGCTACAATTATGGCACCTGTGACAAAACCAGGGAGGAATGTGACTGTGATGAATACAAAAACAAGGATGGAGACTGCTATGAATATGGCAACTGTGACAAATCCCCCTACCATGAGGATGGCGATCATCAGTACAACTGGAATTCCTACAAGAAACAGGTGCCGGAGTCGAAAGAGGTGGCCGGAAAGTATGGAGTCCACCAGAAGTACCCCTGA

Protein sequence

MQKPIDLFTQNGYLISIVAYKFGGLQSIFTHTEKRQREKKEKMMIGKALVAMLSVSAMTMAFLQNVEGGRDMALKEAKPHNPQIFNENLGYRSKEEYDCEGYKYKDRDCYNYGTCDKTREECDCDEYKNKDGDCYEYGNCDKSPYHEDGDHQYNWNSYKKQVPESKEVAGKYGVHQKYP
Homology
BLAST of Lag0033142 vs. NCBI nr
Match: KAG6606309.1 (hypothetical protein SDJN03_03626, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-43
Identity = 95/139 (68.35%), Postives = 108/139 (77.70%), Query Frame = 0

Query: 44  MIGKALVAMLSVSAMTMAF--LQNVEGGRDMALKEAKPHNPQIFNENLGYRSKEEYDCEG 103
           MI KALV +L+VSAM MA   LQ+ EG        AK  NPQ+F ENLGY+SK +Y C+G
Sbjct: 1   MISKALVILLAVSAMAMAMTALQSAEG--------AKTQNPQVFKENLGYKSKGDYGCDG 60

Query: 104 YKYKDRDCYNYGTCDKTREECDCDEYKNKDGDCYEYGNCDKSPYHEDGDHQYNWNSYKKQ 163
           YKYKDRDCY YG CDK+ E+CDCDEYK KDGDC EYGNCDK+PY+E GDH Y+ NSYKKQ
Sbjct: 61  YKYKDRDCYKYGYCDKSNEDCDCDEYKYKDGDCDEYGNCDKAPYYEAGDHPYDGNSYKKQ 120

Query: 164 VPES-KEVAGKYGVHQKYP 180
             +S KEVAGKYGVHQKYP
Sbjct: 121 ALDSKKEVAGKYGVHQKYP 131

BLAST of Lag0033142 vs. NCBI nr
Match: KAA0068070.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 8.1e-27
Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = 0

Query: 43  MMIGKALVAMLSVSAMTMAFLQNVEGGRDMALKE--AKPHNPQIFNENLGYRSKEEYDCE 102
           M I K L+A+L VSA+ M  L+NVEGGR+MA K+  AK +  ++ +   GY+ KE+Y  E
Sbjct: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDY--E 60

Query: 103 GYKYKDRDCYNYGTCDKTREECDCDEYKNKDGDCYEYGNCDKSPYHEDGDHQYNWNSYKK 162
           GYK K              E+ +CD YK KD DCYEYGNCDKSPY+ED DHQYNW  YKK
Sbjct: 61  GYKPK--------------EDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKK 120

Query: 163 QVPESKEVAGKYGVHQKYP 180
            + + KE+  KYGVHQ YP
Sbjct: 121 PITKPKEMGEKYGVHQSYP 123

BLAST of Lag0033142 vs. NCBI nr
Match: AAB82329.1 (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-25
Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 0

Query: 44  MIGKALVAMLSVSAMTMAFLQNVEGGRDMALKEAKPH-NPQIFNENL-GYRSKEEYDCEG 103
           ++GK LVAML +SA+ MA L+NVEGGR+M LKEA  +  P + NE   GY+ KE+Y+C+G
Sbjct: 3   IVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYECDG 62

Query: 104 YKYKDRDCYNYGTCDKTREECDCDEYKNKDGDCYEYGNCDKSPYH-EDGDHQYNWNSYKK 163
           YKYKD+                         +CYEYGNCDKSPY+ E+ D QYN + YKK
Sbjct: 63  YKYKDK-------------------------NCYEYGNCDKSPYNEEEDDRQYNGSPYKK 116

Query: 164 QVPESKEVAGKYGVHQKYP 180
            +P+ KE+A KYGVH  +P
Sbjct: 123 PIPKPKEMARKYGVHHNFP 116

BLAST of Lag0033142 vs. NCBI nr
Match: KAE8650853.1 (hypothetical protein Csa_001704, partial [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-25
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 0

Query: 43  MMIGKALVAMLSVSAMTMAFLQNVEGGRDMALKE--AKPHNPQIFNENLGYRSKEEYDCE 102
           M I K LVA+L VSAM MAFL+NVEGGR+MALK+  AK ++ ++     GY+ KE+Y  E
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDY--E 60

Query: 103 GYKYKDRDCYNYGTCDKTREECDCDEYKNKDGDCYEYGNCDKSPYHEDGDHQYNWNSYKK 162
           GYK K+ D   Y    K +E+ +CD YK  D DCYEYGNCDKSPY+ED DHQYNW   KK
Sbjct: 61  GYKPKE-DYEGY----KPKEDYECDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKK 120

Query: 163 QVPESKEVA 170
            + + KE+A
Sbjct: 121 PIAKPKEMA 122

BLAST of Lag0033142 vs. NCBI nr
Match: KGN46573.1 (hypothetical protein Csa_005092 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-23
Identity = 68/141 (48.23%), Postives = 86/141 (60.99%), Query Frame = 0

Query: 43  MMIGKALVAMLSVSAMTMAFLQNVEGGRDMALKEA-KPHNPQIFNENLGYR-SKEEYDCE 102
           M  GK LVA+L+ S + M F++NVEG R M LKEA K +N Q+ NE + Y  +++EYDC+
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKMEYNPNEDEYDCD 61

Query: 103 GYKYKDRDCYNYGTCDKTREECDCDEYKNKDGDCYEYGNCDKSPY--HEDGDHQYNWNSY 162
           GYKYKD+                         DCY+YGNCDKSPY   +D D QYNWNSY
Sbjct: 62  GYKYKDK-------------------------DCYDYGNCDKSPYDHSDDDDGQYNWNSY 117

Query: 163 KKQVPESKEVAGKYGVHQKYP 180
           K  VP+ KEV  KY VH+ +P
Sbjct: 122 KNPVPKPKEVDEKYKVHKNFP 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6606309.12.1e-4368.35hypothetical protein SDJN03_03626, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0068070.18.1e-2752.52Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucel... [more]
AAB82329.17.6e-2548.92seed nucellus-specific protein [Citrullus lanatus][more]
KAE8650853.17.6e-2555.81hypothetical protein Csa_001704, partial [Cucumis sativus][more]
KGN46573.11.4e-2348.23hypothetical protein Csa_005092 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033142.1Lag0033142.1mRNA