Lag0033080 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033080
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGTPase
Locationchr11: 40585810 .. 40586160 (+)
RNA-Seq ExpressionLag0033080
SyntenyLag0033080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCATCTGCTGAGGTTCATGGACATCCCAATGGCACTATCAAACACATGAAAATGATAAAGCAGGCTTCCAACTCCTCCTACTCGAAACATCGGGCGAGCCCTCGAGTGTTGATTAGTCAGAAGTTCAATCAATATATGTCAATTAACTCACCAGTACACAGATGGCCTAAGCCCTTCCCTACCATTGCAATGATCATGAGGCAGCCAAAGCCTGCTGGGATTACCATTCAACACAGACAATACAGCATTTATGGCTCTGAAGCAATGAAAACAAATTACAGAAGAGGAAGTTTCGGTCATGTCGTTATTCGGGACGATATTATGCAGTGGATGCTCAGAAATTAG

mRNA sequence

ATGAAACCATCTGCTGAGGTTCATGGACATCCCAATGGCACTATCAAACACATGAAAATGATAAAGCAGGCTTCCAACTCCTCCTACTCGAAACATCGGGCGAGCCCTCGAGTGTTGATTAGTCAGAAGTTCAATCAATATATGTCAATTAACTCACCAGTACACAGATGGCCTAAGCCCTTCCCTACCATTGCAATGATCATGAGGCAGCCAAAGCCTGCTGGGATTACCATTCAACACAGACAATACAGCATTTATGGCTCTGAAGCAATGAAAACAAATTACAGAAGAGGAAGTTTCGGTCATGTCGTTATTCGGGACGATATTATGCAGTGGATGCTCAGAAATTAG

Coding sequence (CDS)

ATGAAACCATCTGCTGAGGTTCATGGACATCCCAATGGCACTATCAAACACATGAAAATGATAAAGCAGGCTTCCAACTCCTCCTACTCGAAACATCGGGCGAGCCCTCGAGTGTTGATTAGTCAGAAGTTCAATCAATATATGTCAATTAACTCACCAGTACACAGATGGCCTAAGCCCTTCCCTACCATTGCAATGATCATGAGGCAGCCAAAGCCTGCTGGGATTACCATTCAACACAGACAATACAGCATTTATGGCTCTGAAGCAATGAAAACAAATTACAGAAGAGGAAGTTTCGGTCATGTCGTTATTCGGGACGATATTATGCAGTGGATGCTCAGAAATTAG

Protein sequence

MKPSAEVHGHPNGTIKHMKMIKQASNSSYSKHRASPRVLISQKFNQYMSINSPVHRWPKPFPTIAMIMRQPKPAGITIQHRQYSIYGSEAMKTNYRRGSFGHVVIRDDIMQWMLRN
Homology
BLAST of Lag0033080 vs. NCBI nr
Match: XP_022159442.1 (uncharacterized protein LOC111025863 isoform X1 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-38
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 0

Query: 1   MKPSAEVHGHPNGTIKHMKMIKQASNSSYSKHRASPRVLISQKFNQYMSINSPVHRWPKP 60
           MKPSAE+  H +G I  MKMIKQ SN SY KHRASPR +ISQKF+QYMSI S + RWPKP
Sbjct: 82  MKPSAEIREHQDGAITGMKMIKQVSN-SYLKHRASPRAVISQKFDQYMSITSSIRRWPKP 141

Query: 61  FPTIAMIMRQPKPAGITIQHRQYSIYGSEAMKTNYRRGSFGHVVIRDDIMQWMLRN 117
           FPT AMIMRQPKPAG  IQ+RQYSI GSEAM+TNYRRGSF   VIR+DI+QWMLR+
Sbjct: 142 FPTFAMIMRQPKPAGTKIQYRQYSICGSEAMETNYRRGSF-DCVIREDILQWMLRS 195

BLAST of Lag0033080 vs. NCBI nr
Match: KAG6606267.1 (hypothetical protein SDJN03_03584, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036208.1 hypothetical protein SDJN02_03009, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37
Identity = 86/118 (72.88%), Postives = 96/118 (81.36%), Query Frame = 0

Query: 1   MKPSAEVHGHPNGTIKHMKMIKQASNSSYSKHRASPRVLISQKFNQYMSINSPVHRWPKP 60
           MKPS E+H  P G +K MKM+KQAS SSY KHR SPR +ISQKF+QYMSI S VHRWPKP
Sbjct: 81  MKPSTEIHEPPRGPMKCMKMVKQAS-SSYLKHRPSPRAVISQKFDQYMSITSSVHRWPKP 140

Query: 61  FPTIAMIMRQPKPA--GITIQHRQYSIYGSEAMKTNYRRGSFGHVVIRDDIMQWMLRN 117
           FPTIAMIMRQPKPA  G  IQ+RQY+I GSEA+K NYR G F + VIR+DIMQWMLRN
Sbjct: 141 FPTIAMIMRQPKPAGTGTMIQYRQYAICGSEALKMNYRTGGFNN-VIREDIMQWMLRN 196

BLAST of Lag0033080 vs. NCBI nr
Match: XP_023533976.1 (uncharacterized protein LOC111795664 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-37
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 0

Query: 1   MKPSAEVHGHPNGTIKHMKMIKQASNSSYSKHRASPRVLISQKFNQYMSINSPVHRWPKP 60
           MK SAE+H  P G +K MKM+KQAS SSY KHR SPR +ISQKF+QYMSI S VHRWPKP
Sbjct: 81  MKQSAEIHEPPRGPMKCMKMVKQAS-SSYLKHRPSPRAVISQKFDQYMSITSSVHRWPKP 140

Query: 61  FPTIAMIMRQPKPA--GITIQHRQYSIYGSEAMKTNYRRGSFGHVVIRDDIMQWMLRN 117
           FPTIAMIMRQPKPA  G  IQ+RQY+I GSEAMK NYR G F + VIR+DIMQWMLRN
Sbjct: 141 FPTIAMIMRQPKPAGTGTMIQYRQYAICGSEAMKMNYRTGGFNN-VIREDIMQWMLRN 196

BLAST of Lag0033080 vs. NCBI nr
Match: XP_022995481.1 (uncharacterized protein LOC111491005 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 88/119 (73.95%), Postives = 97/119 (81.51%), Query Frame = 0

Query: 1   MKPSAEVHGHPNGTIKHMKMIKQASNSSYSKHRASPRVLISQKFNQYMSINSPVHRWPKP 60
           MK SAE+H  P G +K MKM+KQAS SSY KHR SPR +ISQKF+QYMSI S VHRWPKP
Sbjct: 82  MKQSAEIHEPPRGPMKCMKMVKQAS-SSYLKHRPSPRAVISQKFDQYMSITSSVHRWPKP 141

Query: 61  FPTIAMIMRQPKPA--GITIQHRQYSIYGSEAMKT-NYRRGSFGHVVIRDDIMQWMLRN 117
           FPTIAMIMRQPKPA  G  IQ+RQY+I GSEAM T NYRRG F + VIR+DIMQWMLRN
Sbjct: 142 FPTIAMIMRQPKPAGTGTMIQYRQYAICGSEAMTTMNYRRGGFNN-VIREDIMQWMLRN 198

BLAST of Lag0033080 vs. NCBI nr
Match: XP_022930989.1 (uncharacterized protein LOC111437317 [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 85/118 (72.03%), Postives = 94/118 (79.66%), Query Frame = 0

Query: 1   MKPSAEVHGHPNGTIKHMKMIKQASNSSYSKHRASPRVLISQKFNQYMSINSPVHRWPKP 60
           MK SAE+H  P G +K MKM+KQAS SSY KHR SPR +ISQKF+QYMSI S VHRWPKP
Sbjct: 81  MKQSAEIHEPPRGPMKCMKMVKQAS-SSYLKHRPSPRAVISQKFDQYMSITSSVHRWPKP 140

Query: 61  FPTIAMIMRQPKPA--GITIQHRQYSIYGSEAMKTNYRRGSFGHVVIRDDIMQWMLRN 117
           FPTIAMIMRQPKPA  G  IQ+RQY I GSEAMK NY  G F + VIR+DIM+WMLRN
Sbjct: 141 FPTIAMIMRQPKPAGTGTMIQYRQYGICGSEAMKMNYIGGGFNN-VIREDIMRWMLRN 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159442.11.7e-3874.14uncharacterized protein LOC111025863 isoform X1 [Momordica charantia][more]
KAG6606267.11.9e-3772.88hypothetical protein SDJN03_03584, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023533976.12.5e-3773.73uncharacterized protein LOC111795664 [Cucurbita pepo subsp. pepo][more]
XP_022995481.11.2e-3673.95uncharacterized protein LOC111491005 [Cucurbita maxima][more]
XP_022930989.11.1e-3572.03uncharacterized protein LOC111437317 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR35998FAMILY NOT NAMEDcoord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033080.1Lag0033080.1mRNA