Lag0033019 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033019
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProlamin_like domain-containing protein
Locationchr11: 39993661 .. 39994044 (-)
RNA-Seq ExpressionLag0033019
SyntenyLag0033019
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAATCAGTTCGATTTTTCGGCTTCTTCCTCTTAGCCCTAGCGATTTCATCGTCGATTCAATCGGCATTCGCTCTCAGGAAGATTCCGGAGGCAATTGATTCAGCGGATTGGTCGGCGGCGGCCTGTTGGGACGCGATAAACGCGGTGGTAGGGTGCCAGGACGAGATCGACATGGCTATGAAGAGCAATGAGATCGAGGTGAGCTACGATTGTTGCAGAGTGATATTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTTTCATCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGATGGAATGGGAATTACTCCGGCGGTGGTTGAGTCGGAGGATAAAGCCGAAGAAAATTGA

mRNA sequence

ATGTTGAAATCAGTTCGATTTTTCGGCTTCTTCCTCTTAGCCCTAGCGATTTCATCGTCGATTCAATCGGCATTCGCTCTCAGGAAGATTCCGGAGGCAATTGATTCAGCGGATTGGTCGGCGGCGGCCTGTTGGGACGCGATAAACGCGGTGGTAGGGTGCCAGGACGAGATCGACATGGCTATGAAGAGCAATGAGATCGAGGTGAGCTACGATTGTTGCAGAGTGATATTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTTTCATCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGATGGAATGGGAATTACTCCGGCGGTGGTTGAGTCGGAGGATAAAGCCGAAGAAAATTGA

Coding sequence (CDS)

ATGTTGAAATCAGTTCGATTTTTCGGCTTCTTCCTCTTAGCCCTAGCGATTTCATCGTCGATTCAATCGGCATTCGCTCTCAGGAAGATTCCGGAGGCAATTGATTCAGCGGATTGGTCGGCGGCGGCCTGTTGGGACGCGATAAACGCGGTGGTAGGGTGCCAGGACGAGATCGACATGGCTATGAAGAGCAATGAGATCGAGGTGAGCTACGATTGTTGCAGAGTGATATTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTTTCATCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGATGGAATGGGAATTACTCCGGCGGTGGTTGAGTCGGAGGATAAAGCCGAAGAAAATTGA

Protein sequence

MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIDSADWSAAACWDAINAVVGCQDEIDMAMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSPEISGAVNEYCDGMGITPAVVESEDKAEEN
Homology
BLAST of Lag0033019 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQ--SAFALRKIPEAIDSADWSAAACWDAINAVVGCQDEI 60
           MLKSVRF G FLLALAISSSIQ  SAFALR IPEA++SADWSAA CWDAI AV GCQDEI
Sbjct: 1   MLKSVRFVG-FLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSPEISGAVNEYCDGMGITPAVV 120
           DMAMKSNEIEVS DCCR ILHGLP+KCAA VFSSGGEFS EISGAVNEYCDGMGITP V+
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ESED 123
           E+++
Sbjct: 121 ETDE 123

BLAST of Lag0033019 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIDSADWSAAACWDAINAVVGCQDEIDM 60
           M KS RFFGFFL ALAISSS QSAFA+RKI EA+ SAD     CWDAINAV GCQ++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSPEISGAVNEYCDGMGITPAVVES 120
           AMKSNEIEVSYDCC+VILHG+PEKCAAVVFSSGGEFSPE+SGAVNEYCDGMGITP V+E+
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KAEEN 128
           ED K +EN
Sbjct: 121 EDTKVDEN 123

BLAST of Lag0033019 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-46
Identity = 99/118 (83.90%), Postives = 104/118 (88.14%), Query Frame = 0

Query: 1   MLKSVRFFGFFLLALAISSSIQSAFALRKIPEAIDSADWSAAACWDAINAVVGCQDEIDM 60
           M KSVRFFGFFLLAL ISS I SAFALRK P+AIDSADWS AAC DA+NAV GCQ EIDM
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCAAVVFSSGGEFSPEISGAVNEYCDGMGITPAVV 119
           A+ SNEIEVSY+CCRVILHGLPEKCAAVVFSSGGE S EISGAV EYCDGMGITP V+
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

BLAST of Lag0033019 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-21
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 68  EVSYDCCRVILHGLPEKCAAVVFSSGGEFSPEISGAVNEYCDGMGITPAVVESED-KAEE 127
           +VSYDCC+VILHG+PEKCAAVVFSSGGEFSP++SGAVNEYCDGMGITP V+E+ED K EE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

BLAST of Lag0033019 vs. NCBI nr
Match: PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 33/102 (32.35%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 19  SSIQSAFALRKIPEAIDSADW------SAAACWDAINAVVGCQDEIDMAMKSNEIEVSYD 78
           S +  AFA+   P A+    W          CW  IN   GC+ EI  ++   +I++SY 
Sbjct: 6   SILSLAFAIAITP-ALSVVGWDERHMPDPRVCWAQINKANGCEHEIYASLVKKKIKLSYG 65

Query: 79  CCRVILHGLPEKCAAVVFSSGGEFSPEISGAVNEYCDGMGIT 115
           CC  +  G+  KC   +F+  G FSPE    +  YC  +G+T
Sbjct: 66  CCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQIKGYCATLGVT 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022931003.12.2e-4783.87uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... [more]
KAA0038539.13.8e-4779.69hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... [more]
KAG6571831.13.2e-4683.90hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652857.14.7e-2183.61hypothetical protein Csa_023774, partial [Cucumis sativus][more]
PPR81469.11.4e-0432.35hypothetical protein GOBAR_AA39249 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 44..109
e-value: 2.4E-8
score: 34.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033019.1Lag0033019.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity