Lag0032931 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032931
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Carotenoid cleavage dioxygenase 1
Location	chr11: 38998127 .. 38998435 (+)
RNA-Seq Expression	Lag0032931
Synteny	Lag0032931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCCAGCAGAGTGCTTTCGTCGTTGGTGTTCTTTCTGATCTCTACGCATTTCACCGCTCCACCGAAAATTCCCTCTGCCCCTACTGTACTCCATCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGAGATTTGACGACGGGCTTAAAAAGCCACCTACATACGCTTTACGCCCAATCATTCCAGATAACACTTGCATCCTCTGTATTACTGCGACTGCTGGCACAAAGTTAGCCGATGCTTATTCCTTAGATACCGTCACTGCTTCTTCTTCGGGAAAAGAAGTTCACGACCCGTAG

mRNA sequence

ATGTCGACCCAGCAGAGTGCTTTCGTCGTTGGTGTTCTTTCTGATCTCTACGCATTTCACCGCTCCACCGAAAATTCCCTCTGCCCCTACTATAACACTTGCATCCTCTGTATTACTGCGACTGCTGGCACAAAGTTAGCCGATGCTTATTCCTTAGATACCGTCACTGCTTCTTCTTCGGGAAAAGAAGTTCACGACCCGTAG

Coding sequence (CDS)

ATGTCGACCCAGCAGAGTGCTTTCGTCGTTGGTGTTCTTTCTGATCTCTACGCATTTCACCGCTCCACCGAAAATTCCCTCTGCCCCTACTATAACACTTGCATCCTCTGTATTACTGCGACTGCTGGCACAAAGTTAGCCGATGCTTATTCCTTAGATACCGTCACTGCTTCTTCTTCGGGAAAAGAAGTTCACGACCCGTAG

Protein sequence

MSTQQSAFVVGVLSDLYAFHRSTENSLCPYYNTCILCITATAGTKLADAYSLDTVTASSSGKEVHDP

Homology

[Close]

BLAST of Lag0032931 vs. NCBI nr
Match: RWR98208.1 (putative cytochrome c biosynthesis protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MSTQQSAFVVGVLSDLYAFHRSTENSLCPYYNTCILCITATAGTKLADAYSLDTVTASSS 60
          +S QQ AF VGVLSDLYAFHRST NSLCPY+N CILC+TA AGT+LADAYS DTV ASS 
Sbjct: 28 VSAQQGAFAVGVLSDLYAFHRSTGNSLCPYHNACILCLTAAAGTELADAYSSDTVIASSP 87

Query: 61 GKEVHDP 68
          GKEVHDP
Sbjct: 88 GKEVHDP 94

[Close]

BLAST of Lag0032931 vs. NCBI nr
Match: QHO53328.1 (uncharacterized protein DS421_2g46980 [Arachis hypogaea])

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 1  MSTQQSAFVVGVLSDLYAFHRSTENSLCPYY--------NTCILCITATAGTKLADAYSL 60
          +S QQSAFVVGVLSDLYAFHRSTENSLCPY+        N C LC+T  AGTKLADAYSL
Sbjct: 22 VSAQQSAFVVGVLSDLYAFHRSTENSLCPYHVLRSIIPDNACFLCLTVAAGTKLADAYSL 81

Query: 61 DTVTASSSGKEVHDP 68
          DTV ASS GKEVHDP
Sbjct: 82 DTVIASSPGKEVHDP 96

[Close]

BLAST of Lag0032931 vs. NCBI nr
Match: PPD74579.1 (hypothetical protein GOBAR_DD28494 [Gossypium barbadense])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 56/75 (74.67%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MSTQQSAFVVGVLSDLYAFHRSTENSLCPYY--------NTCILCITATAGTKLADAYSL 60
          +S QQSAF VGVLSDLYAFHRST NSLCPY+        N CILCITA AGT+LADAYS 
Sbjct: 18 VSAQQSAFAVGVLSDLYAFHRSTGNSLCPYHALRPIIPDNACILCITAAAGTELADAYSP 77

Query: 61 DTVTASSSGKEVHDP 68
          DTV ASS GKEVHDP
Sbjct: 78 DTVIASSPGKEVHDP 92

[Close]

BLAST of Lag0032931 vs. NCBI nr
Match: PLY97343.1 (hypothetical protein LSAT_4X145420 [Lactuca sativa])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 56/75 (74.67%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MSTQQSAFVVGVLSDLYAFHRSTENSLCPYY--------NTCILCITATAGTKLADAYSL 60
          +S QQSAF VGVLSDLYAFHRST NSLCPY+        N CILCITA AGT+LADAYS 
Sbjct: 22 VSAQQSAFAVGVLSDLYAFHRSTGNSLCPYHALRPIIPDNACILCITAAAGTELADAYSP 81

Query: 61 DTVTASSSGKEVHDP 68
          DTV ASS GKEVHDP
Sbjct: 82 DTVIASSPGKEVHDP 96

[Close]

BLAST of Lag0032931 vs. NCBI nr
Match: THG12292.1 (hypothetical protein TEA_001479 [Camellia sinensis var. sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 56/75 (74.67%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MSTQQSAFVVGVLSDLYAFHRSTENSLCPYY--------NTCILCITATAGTKLADAYSL 60
          +S QQSAF VGVLSDLYAFHRST NSLCPY+        N CILCITA AGT+LADAYS 
Sbjct: 7  VSAQQSAFAVGVLSDLYAFHRSTGNSLCPYHALRPIIPDNACILCITAAAGTELADAYSP 66

Query: 61 DTVTASSSGKEVHDP 68
          DTV ASS GKEVHDP
Sbjct: 67 DTVIASSPGKEVHDP 81

The following BLAST results are available for this feature:

BLAST of Lag0032931 vs. NCBI nr


Match Name	E-value	Identity	Description
RWR98208.1	3.2e-21	80.60	putative cytochrome c biosynthesis protein [Cinnamomum micranthum f. kanehirae]	[more]
QHO53328.1	5.5e-21	76.00	uncharacterized protein DS421_2g46980 [Arachis hypogaea]	[more]
PPD74579.1	1.4e-19	74.67	hypothetical protein GOBAR_DD28494 [Gossypium barbadense]	[more]
PLY97343.1	1.4e-19	74.67	hypothetical protein LSAT_4X145420 [Lactuca sativa]	[more]
THG12292.1	1.4e-19	74.67	hypothetical protein TEA_001479 [Camellia sinensis var. sinensis]	[more]

BLAST of Lag0032931 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 2..67
None	No IPR available	PANTHER	PTHR38146:SF8	BNACNNG13060D PROTEIN	coord: 2..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032931.1	Lag0032931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006412	translation
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003735	structural constituent of ribosome