Lag0032858 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032858
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 38256434 .. 38256742 (+)
RNA-Seq ExpressionLag0032858
SyntenyLag0032858
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATTTTTGGTGGGGCAGCTCAGAACAAGGGAGGAAAATTCACTGGTTGAAATGGGAGTCAATGACAAAGCCGAAGGATAGAGGAGGGATGGGGTTCAGAGACATAAGACTGTTTAACCAGGCTTTGTTGGCAAAACATACATGGAGGCTTTTATACAGACCTCAATCTCTGTTGGCTCAAATCCTAAAAGCCAGATATTACCCACAAGGAGATTTCCTTAAAACAAACCTGGGAAGCAGACCATCATATGTCTGGAGGGGGATCATATGGGGAAGAGAACTAGCCATGAAGGGAGGACGCTGA

mRNA sequence

ATGGCTAATTTTTGGTGGGGCAGCTCAGAACAAGGGAGGAAAATTCACTGGTTGAAATGGGAGTCAATGACAAAGCCGAAGGATAGAGGAGGGATGGGGTTCAGAGACATAAGACTGTTTAACCAGGCTTTGTTGGCAAAACATACATGGAGGCTTTTATACAGACCTCAATCTCTGTTGGCTCAAATCCTAAAAGCCAGATATTACCCACAAGGAGATTTCCTTAAAACAAACCTGGGAAGCAGACCATCATATGTCTGGAGGGGGATCATATGGGGAAGAGAACTAGCCATGAAGGGAGGACGCTGA

Coding sequence (CDS)

ATGGCTAATTTTTGGTGGGGCAGCTCAGAACAAGGGAGGAAAATTCACTGGTTGAAATGGGAGTCAATGACAAAGCCGAAGGATAGAGGAGGGATGGGGTTCAGAGACATAAGACTGTTTAACCAGGCTTTGTTGGCAAAACATACATGGAGGCTTTTATACAGACCTCAATCTCTGTTGGCTCAAATCCTAAAAGCCAGATATTACCCACAAGGAGATTTCCTTAAAACAAACCTGGGAAGCAGACCATCATATGTCTGGAGGGGGATCATATGGGGAAGAGAACTAGCCATGAAGGGAGGACGCTGA

Protein sequence

MANFWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLLAQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKGGR
Homology
BLAST of Lag0032858 vs. NCBI nr
Match: XP_013709208.1 (uncharacterized protein LOC106412876 [Brassica napus])

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-31
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0

Query: 1   MANFWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLL 60
           MA+FWW SSE   KIHWL W+ +  PKDRGGMGF+DI  FNQALLAK  WR+L  P SLL
Sbjct: 492 MASFWWRSSEDKAKIHWLSWDKLCIPKDRGGMGFKDIETFNQALLAKQAWRILSSPSSLL 551

Query: 61  AQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKGGR 103
           ++ LK+RY+P G FL  +LGSRPS+ WR I++GREL  KG R
Sbjct: 552 SRFLKSRYFPNGSFLPASLGSRPSFAWRSILFGRELLSKGLR 593

BLAST of Lag0032858 vs. NCBI nr
Match: XP_013654036.2 (uncharacterized protein LOC106358780 [Brassica napus])

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-31
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 0

Query: 1   MANFWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLL 60
           MA+FWW SSE   KIHWL W+ +  PKDRGGMGF+DI  FNQALLAK  WR+L  P SL+
Sbjct: 729 MASFWWRSSEDKAKIHWLSWDKLCIPKDRGGMGFKDIETFNQALLAKQAWRILSSPSSLI 788

Query: 61  AQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKGGR 103
           ++ LK+RY+P G FL  +LGSRPS+ WR I++GREL  KG R
Sbjct: 789 SRFLKSRYFPNGSFLPASLGSRPSFAWRSILFGRELLSKGLR 830

BLAST of Lag0032858 vs. NCBI nr
Match: XP_013654011.1 (uncharacterized protein LOC106358754 [Brassica napus])

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-31
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0

Query: 1   MANFWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLL 60
           MA+FWW SSE   KIHWL W+ +  PKDRGGMGF+DI  FNQALLAK  WR+L  P SLL
Sbjct: 403 MASFWWRSSEDKAKIHWLSWDKLCIPKDRGGMGFKDIETFNQALLAKQAWRILSSPSSLL 462

Query: 61  AQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKGGR 103
           ++ LK+RY+P G FL   LGSRPS+ WR I++GREL  KG R
Sbjct: 463 SRFLKSRYFPNGSFLPAPLGSRPSFAWRSILFGRELLSKGLR 504

BLAST of Lag0032858 vs. NCBI nr
Match: XP_018479968.1 (PREDICTED: uncharacterized protein LOC108851032 [Raphanus sativus])

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-31
Identity = 59/100 (59.00%), Postives = 77/100 (77.00%), Query Frame = 0

Query: 1   MANFWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLL 60
           MAN+WWG+ E  RKIHWL W+ +  PK+ GGMGFRD+ +FNQALLAK  W++L  P  LL
Sbjct: 411 MANYWWGADEHLRKIHWLSWDKLCLPKEIGGMGFRDLEVFNQALLAKQAWKVLVYPHCLL 470

Query: 61  AQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKG 101
           AQ+LK+RY+P  +FL+  LG RPSY WR +++GREL +KG
Sbjct: 471 AQVLKSRYFPNSNFLEAKLGERPSYAWRSLLFGRELLLKG 510

BLAST of Lag0032858 vs. NCBI nr
Match: XP_010513742.1 (PREDICTED: uncharacterized protein LOC104789794 [Camelina sativa])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 1    MANFWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLL 60
            MANFWW + E+ +K+HW+ WE M K KD+GG+GFRDI  FNQALLAK  WRLL  P SLL
Sbjct: 1239 MANFWWNAVEEKQKMHWVSWEKMCKSKDQGGLGFRDIGRFNQALLAKQAWRLLDAPSSLL 1298

Query: 61   AQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKG 101
            A++ KARY+P   F++ NLG RPSY WR I++GREL  KG
Sbjct: 1299 ARVYKARYFPSISFMEANLGPRPSYAWRSILFGRELLEKG 1338

BLAST of Lag0032858 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-26
Identity = 50/101 (49.50%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MANFWWGSSEQGRKIHWLKWESMTKPK-DRGGMGFRDIRLFNQALLAKHTWRLLYRPQSL 60
           M  FWW S E  RKI W+ W+ + K K D GG+GFRD+  FNQALLAK ++R++++P +L
Sbjct: 25  MTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTL 84

Query: 61  LAQILKARYYPQGDFLKTNLGSRPSYVWRGIIWGRELAMKG 101
           L+++L++RY+P    ++ ++G+RPSY WR II GREL  +G
Sbjct: 85  LSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRG 125

BLAST of Lag0032858 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-08
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 0

Query: 4   FWWGSSEQGRKIHWLKWESMTKPKDRGGMGFRDIRLFNQALLAKHTWRLLYRPQSLLAQI 63
           F WGS+ + +K H +KW  +  PK  GG+G R  +  N+AL++K  WRLL    SL   +
Sbjct: 73  FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLV 132

Query: 64  LKARYY 70
           L+ +Y+
Sbjct: 133 LQKKYH 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_013709208.12.4e-3162.75uncharacterized protein LOC106412876 [Brassica napus][more]
XP_013654036.24.0e-3161.76uncharacterized protein LOC106358780 [Brassica napus][more]
XP_013654011.15.3e-3162.75uncharacterized protein LOC106358754 [Brassica napus][more]
XP_018479968.15.3e-3159.00PREDICTED: uncharacterized protein LOC108851032 [Raphanus sativus][more]
XP_010513742.11.5e-3062.00PREDICTED: uncharacterized protein LOC104789794 [Camelina sativa][more]
Match NameE-valueIdentityDescription
P932951.8e-2649.50Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P0C2F62.2e-0839.39Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 4..95
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 4..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032858.1Lag0032858.1mRNA