Lag0032842 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032842
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein cornichon homolog 4-like
Locationchr11: 38155877 .. 38157690 (-)
RNA-Seq ExpressionLag0032842
SyntenyLag0032842
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATATCTATGTCTGGCTCCTCTCCTTCTTCTTCATCATCGCACTTCTCGTCCTCGTCGTCTTCCAGGTTTTCTCTAAACCCTAGAATTTCTCTTCATTCGAATTTAGCCTTTCTTGTGTTTCCCCGCCTCAAACATCTGTTGCAATTGCTTAACCTTTCTTTTTCTTGATTTGTTTTTGTGTATGTATCCCAAATTACTCGATTGAAACCGCTCTTTGTTTGAGTTATTTTCTGGGGCATTAACAGCCTAGAGACTTACCTGAAAATTCTTGGCCACTAATGTTTGATTTGAATGCCCCTTAATTTCTTGATCTTGATATAAACAATATTGCTTAAGCCGGTTCTCCTTCTGTCTGTGCTTTGAGAATCATAATTGCTTGTGCGATCCTTAATCTTGTAGCGTTTTACCATGGACATCATTGGTACTTGTTGGCACTGTTTGGTACAGACTTGCTGTTTTGCGCTGGGTTGTAGTCTATAAACACTAGCTATCCGTTTTTGCATGCTTACATGGGTTCATTGGGCTTGTGCTACAGCATAGATATCTCAATTCGGTTGTACCGTGTCTATGATACTAGCATTCCCTACATTTGAATACTTGAATTGACATTCTGTATTGCTAATTGCCTAATACCATTGGTGAAACAATGTTGGAACTGAGGAACTTATGATGCTTTTAAAACTTGTTGCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAATCCTTATGACTCCTCATCACGGATAAACAAAGTGGTTGTACCTGAGTTCATCACCCAAGGAGTCTTGTGTATCTTCTATCTTTTAACAGGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTACAATTTAAGAATGTAAGTTTATCTAATTCCTGCATCTTTGATCGGATTGTTTAAATTGAGAAGTATCGCAGCAGGCTATATAATTTAAAAAAAAAGAGAGAAAAACGAGGAGGTTGGATTGCATAATTTTTAGTGGGGTATATGCGTTATATTAGTTGTCAATTTGATCTATCAGAACACCATTTATTATTCTGGGCTCTGGATTCCAAATGAAGGACGAATTGTTTATTTTGAAAGAGAGGGCTTATCTCTTATATAAAAAGAAGGGAGGGCTCATCATTCTCTGGTAAACACTTGGTTGCCAAGTGCTTATTGGATGGCGGGTGAAAACATCTAGTATTGGACGCTAAAGCCTTTTACTTTGAATGTATAAATTGTTTTAAAGCACCAATATTCTCTTCTGAAATTTAGAATAATATCAATAGTTTCCAGATAAGTTAATGTGTCGAGATGGTTGGGAGTCTAAGGCGGTCTCATGGTTTGTTAGTCTCTTTGGAGATTCACACTACAGTAGTGTGACTGAAACTAATTTACAATGGTTATCAAGATAAACCAAACTGAAATATAGCATATTTGAGATTGGGTTGGTGAGCATATGGCTTAATACTCAACTTGTTCGTTGCTTGTATTTATGGCAAGCTTCTTGATCTGTCTGATGTGTGTTTTTCTCATGATTACCAGGTACAGTCAGCGAAAGCACCTGGTAGATGTTACTGAGATATTCAACCAGTTACCTTGGGAAAAGAAGCAAAGACTTTTCAAACTCGTCTATTTAGTTTCTCTTCTCTTTCTCTCCATATTTTGGTAATTCAATAGGAGGGAGCGCATTCTTTTTGAATTCTACTGTTAACGTCATTTATTCTAATTATTAAGACCTGCTCTTTTCCTCTTTGTTTCTCTGTTTTGCAGGTTGATCTATAGTGCGTTGGAGGATCATGAATCTTGA

mRNA sequence

ATGGCCGATATCTATGTCTGGCTCCTCTCCTTCTTCTTCATCATCGCACTTCTCGTCCTCGTCGTCTTCCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAATCCTTATGACTCCTCATCACGGATAAACAAAGTGGTTGTACCTGAGTTCATCACCCAAGGAGTCTTGTGTATCTTCTATCTTTTAACAGGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTACAATTTAAGAATGTACAGTCAGCGAAAGCACCTGGTAGATGTTACTGAGATATTCAACCAGTTACCTTGGGAAAAGAAGCAAAGACTTTTCAAACTCGTCTATTTAGTTTCTCTTCTCTTTCTCTCCATATTTTGGTTGATCTATAGTGCGTTGGAGGATCATGAATCTTGA

Coding sequence (CDS)

ATGGCCGATATCTATGTCTGGCTCCTCTCCTTCTTCTTCATCATCGCACTTCTCGTCCTCGTCGTCTTCCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAATCCTTATGACTCCTCATCACGGATAAACAAAGTGGTTGTACCTGAGTTCATCACCCAAGGAGTCTTGTGTATCTTCTATCTTTTAACAGGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTACAATTTAAGAATGTACAGTCAGCGAAAGCACCTGGTAGATGTTACTGAGATATTCAACCAGTTACCTTGGGAAAAGAAGCAAAGACTTTTCAAACTCGTCTATTTAGTTTCTCTTCTCTTTCTCTCCATATTTTGGTTGATCTATAGTGCGTTGGAGGATCATGAATCTTGA

Protein sequence

MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLCIFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLLFLSIFWLIYSALEDHES
Homology
[Close]
BLAST of Lag0032842 vs. NCBI nr
Match: XP_023532889.1 (protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >KAG6606147.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 131/137 (95.62%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           IFYLLTGHWIMSFFCVPYLYYNLR+Y+QRKHLVDVTEIFNQLPWEKK+RLFKLVYL+SLL
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]
BLAST of Lag0032842 vs. NCBI nr
Match: XP_038907022.1 (protein cornichon homolog 4-like [Benincasa hispida])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 131/137 (95.62%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           IFYLL+GHWIMS FC+PYLYYNLR+Y+QRKHLVDVTEIFNQLPWEKKQRLFKL+YLVSLL
Sbjct: 61  IFYLLSGHWIMSLFCIPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLIYLVSLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]
BLAST of Lag0032842 vs. NCBI nr
Match: XP_022996131.1 (protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein cornichon homolog 4-like [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 130/137 (94.89%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           IFYLLTGHWIMSFFC+PYLYYNLR+Y+QRKHLVDVTEIFNQLPWEKK+RLFKLVYL+SLL
Sbjct: 61  IFYLLTGHWIMSFFCLPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]
BLAST of Lag0032842 vs. NCBI nr
Match: XP_022957749.1 (protein cornichon homolog 4-like [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 4.0e-66
Identity = 129/137 (94.16%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVIPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           IFYLLTGHWIMSFFCVPYLYYNLR+Y+QR+HLVDVTEIFNQLPWEKK+RLFKLVYL+SLL
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQREHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]
BLAST of Lag0032842 vs. NCBI nr
Match: XP_022922295.1 (protein cornichon homolog 4-like [Cucurbita moschata] >XP_023551139.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >KAG6579448.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016921.1 Protein cornichon-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           MADIYVWLLSFF IIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           IFYLLTGHWIMS FCVPYLYYN+R+Y+QRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSL+
Sbjct: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]
BLAST of Lag0032842 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53
Identity = 99/136 (72.79%), Postives = 121/136 (88.97%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVLC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           +FYLLTGHW M+  C+PYLYYN  +YS+R+HLVDVTEIFN L WEKK+RLFKL Y+V  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSIFWLIYSALEDHE 137
           FL+IFW+IYSAL+D+E
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]
BLAST of Lag0032842 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.6e-48
Identity = 89/136 (65.44%), Postives = 114/136 (83.82%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG LC
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           +FYL+TGHW M+  CVPYLYYN  +YS+++HL+DVTEIFN L WEKK+RLFKL Y++  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSIFWLIYSALEDHE 137
           FL+IFWLIYS L+D+E
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]
BLAST of Lag0032842 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 5.6e-47
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = 0 

Query: 22  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLCIFYLLTGHWIMSFFCVPYLYY 81
           +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVLC+FYLLTGHW M+  C+PYLYY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLLFLSIFWLIYSALEDHE 137
           N  +YS+R+HLVDVTEIFN L WEKK+RLFKL Y+V  LFL+IFW+IYSAL+D+E
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

[Close]
BLAST of Lag0032842 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-38
Identity = 70/134 (52.24%), Postives = 108/134 (80.60%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60
           M D+  W++SF F+  L+++V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+LC
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  IFYLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120
           ++Y+LTGHW M+   +P+L+YN+R+Y +R+HL DVTE++N   WE+K+R++K+ ++   +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSIFWLIYSALED 135
           F++ +WLI+SAL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]
BLAST of Lag0032842 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-28
Identity = 61/138 (44.20%), Postives = 96/138 (69.57%), Query Frame = 0 

Query: 3   DIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLCIF 62
           D+++W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG LC+ 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWIMSFFCVPYLYYNLRMYSQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLLFL 122
           +LLT HW+     VP   Y+  +Y +R++L+DVTE+F  + +EKK R  KL + V L  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SIFWL----IYSALEDHE 137
            +F L    +YS  ED +
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

The following BLAST results are available for this feature:
BLAST of Lag0032842 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023532889.11.0e-6695.62protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 pr... [more]
XP_038907022.12.3e-6695.62protein cornichon homolog 4-like [Benincasa hispida][more]
XP_022996131.12.3e-6694.89protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein corn... [more]
XP_022957749.14.0e-6694.16protein cornichon homolog 4-like [Cucurbita moschata][more]
XP_022922295.12.0e-6594.16protein cornichon homolog 4-like [Cucurbita moschata] >XP_023551139.1 protein co... [more]
BLAST of Lag0032842 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84W041.4e-5372.79Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV... [more]
Q8GWT56.6e-4865.44Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV... [more]
Q3EDD75.6e-4774.78Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234... [more]
Q9SZ743.6e-3852.24Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV... [more]
Q9C7D77.6e-2844.20Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003377CornichonSMARTSM01398Cornichon_2coord: 4..125
e-value: 4.2E-59
score: 212.3
IPR003377CornichonPFAMPF03311Cornichoncoord: 6..125
e-value: 5.9E-42
score: 142.8
NoneNo IPR availablePANTHERPTHR12290CORNICHON-RELATEDcoord: 1..135
NoneNo IPR availablePANTHERPTHR12290:SF39PROTEIN CORNICHON HOMOLOG 4-LIKEcoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032842.1Lag0032842.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane