Lag0032816 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032816
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 37895324 .. 37896115 (+)
RNA-Seq ExpressionLag0032816
SyntenyLag0032816
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGGCCGAGGCCGAACACCACCTTAAAGAGCTCGGTCACGAAGTAAGTCTTTCCTTACTCAAAAAAATGCATGTTTCGCGTATTGAATACATGTTTTTGAGTGGAGAACTGGGAATAATCATGGTCATTAGTTATATTGCAATGATTTTTTCATTAGTTATATTGCAATGATTTTTTCCTGGCTATATTTTCAAGCTTCAAGCTTTTGATTACAGTTTTTCCCTTTGAAATACTTTGTTGCTTGATATGCCATCAAAATTGTGTGGAAATATGATAGAAGACAGTTTGAGCATACTTTGTTCCCCGACTGAGTGTACGCACCCTCGGGAATAACACAACGCTTGAAGAGAGGCTCGAGAAATTCTCAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTACGCACCCCTAGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCCCAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCATGCAGCTTGAAGAGAGGCTCGGGAAATTCCCAGGCCTCCCCAAACATTTTCCCCAGAAGAGTGTACGCATCCCTGGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCTCAGGCCTCCCTAAGCTTTTTCCGCAGAAGAGTGTACGCACCCCTGGGATGACCGTGATGCTTGAAGAGAGGCCCGGGGAAATCCCAAAGCCTCCCCAAGCTTCCCTCAAACTTCTCAAGCCATGCAGGGAAAATGCTCGTCCTCATGCCAAGGCTAAGGCCGACCATTAA

mRNA sequence

ATGCCAAGGCCGAGGCCGAACACCACCTTAAAGAGCTCGGTCACGAATGTACGCACCCTCGGGAATAACACAACGCTTGAAGAGAGGCTCGAGAAATTCTCAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTACGCACCCCTAGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCCCAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCATGCAGCTTGAAGAGAGGCTCGGGAAATTCCCAGGCCTCCCCAAACATTTTCCCCAGAAGAGTGTACGCATCCCTGGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCTCAGGCCTCCCTAAGCTTTTTCCGCAGAAGAGTGTACGCACCCCTGGGATGACCGTGATGCTTGAAGAGAGGCCCGGGGAAATCCCAAAGCCTCCCCAAGCTTCCCTCAAACTTCTCAAGCCATGCAGGGAAAATGCTCGTCCTCATGCCAAGGCTAAGGCCGACCATTAA

Coding sequence (CDS)

ATGCCAAGGCCGAGGCCGAACACCACCTTAAAGAGCTCGGTCACGAATGTACGCACCCTCGGGAATAACACAACGCTTGAAGAGAGGCTCGAGAAATTCTCAGGCCTCCCCAAGCATTTTCCCCAGAAGAGTGTACGCACCCCTAGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCCCAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCATGCAGCTTGAAGAGAGGCTCGGGAAATTCCCAGGCCTCCCCAAACATTTTCCCCAGAAGAGTGTACGCATCCCTGGGATGACGACGATGCTTGAAGAGAGGCTCGGGAACTTCTCAGGCCTCCCTAAGCTTTTTCCGCAGAAGAGTGTACGCACCCCTGGGATGACCGTGATGCTTGAAGAGAGGCCCGGGGAAATCCCAAAGCCTCCCCAAGCTTCCCTCAAACTTCTCAAGCCATGCAGGGAAAATGCTCGTCCTCATGCCAAGGCTAAGGCCGACCATTAA

Protein sequence

MPRPRPNTTLKSSVTNVRTLGNNTTLEERLEKFSGLPKHFPQKSVRTPRMTTMLEERLGNFPGLPKLFPQKSVRTPGMTMQLEERLGKFPGLPKHFPQKSVRIPGMTTMLEERLGNFSGLPKLFPQKSVRTPGMTVMLEERPGEIPKPPQASLKLLKPCRENARPHAKAKADH
Homology
[Close]
BLAST of Lag0032816 vs. NCBI nr
Match: WP_053484569.1 (hypothetical protein [Lysinibacillus sp. FJAT-14745] >KOP77966.1 hypothetical protein AMS59_15140 [Lysinibacillus sp. FJAT-14745])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 0 

Query: 31  EKFSGLPKHF---PQKSVRTPRMTTMLEERLGNFPGLPKLFPQKSVRTPGMTMQLEERLG 90
           E+F GLP+ F   P++S+  P+    L ER   F GLP+ FP    R  G+  Q  +   
Sbjct: 42  ERFLGLPEQFPDLPERSLGLPKQFPDLPER---FLGLPEQFPDLPERFLGLPEQFPDLPE 101

Query: 91  KFPGLPKHFPQKSVRIPGMTTMLEERLGNFSGLPKLFPQKSVRTPGMTVMLE 140
           +F GLP+ FP    R  G+     +    F GLP+ FP    + P ++ +L+
Sbjct: 102 RFLGLPEQFPDLPERFLGLPEQFPDLPERFLGLPEQFPDLPEQFPYLSKLLK 150

[Close]
BLAST of Lag0032816 vs. NCBI nr
Match: XP_032924805.1 (proline-rich protein 36-like [Catharus ustulatus])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-05
Identity = 38/137 (27.74%), Postives = 55/137 (40.15%), Query Frame = 0 

Query: 4   PRPNTTLKSSVTNVRTLGNNTTLEERLEKFSGLPKHFPQKSVRTPRMTTMLEERLGNFPG 63
           P  N   K+S+T   T    T L E            P+ S+ TP  TT+L E     P 
Sbjct: 535 PSTNNKPKASITTPSTA---TVLPENSITTPSTTTVLPENSITTPSTTTVLPENSITTPS 594

Query: 64  LPKLFPQKSVRTPGMTMQLEERLGKFPGLPKHFPQKSVRIPGMTTMLEERLGNFSGLPKL 123
              + P+ S+ TP  T  L +     P      P+ S+  P  TT+L +          +
Sbjct: 595 TTTVLPENSITTPSTTTVLPDNSITTPSTTTVLPENSITTPSTTTVLPDNSITTPSTTTV 654

Query: 124 FPQKSVRTPGMTVMLEE 141
            P+ S+ TP  T +L E
Sbjct: 655 LPENSITTPSTTTVLPE 668

The following BLAST results are available for this feature:
BLAST of Lag0032816 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_053484569.11.7e-0533.04hypothetical protein [Lysinibacillus sp. FJAT-14745] >KOP77966.1 hypothetical pr... [more]
XP_032924805.13.8e-0527.74proline-rich protein 36-like [Catharus ustulatus][more]
BLAST of Lag0032816 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032816.1Lag0032816.1mRNA