Lag0032805 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032805
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr11: 37751601 .. 37752146 (-)
RNA-Seq ExpressionLag0032805
SyntenyLag0032805
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACGACGAGGATTTGGTGAAGCAACTACAGGACCTTCATGTGACTCCTGCAGAAAGAGCTAGTGTTTTTCAACTCCCTGACAGCGAGATAGACCGATCAGAACAGAAACTAGAGAATACGATATTGTGCAAAATACACACAAAGAAGAAAATTAATCCAAACATGTTTAGTTCAAAAATGCCAAAGATATGGAATCAAGAGAATACAATTATCGATAAGGTGGGATTCAATATTTTCTTTTGCAAGTTCAAGAATGTGAAGATCAAAGGATGGATCTTAGATTCCGGACCATGGTTCTACGATAAAGCTAGGCTTTTATTCGAGGAGCCTAAGGCGGGAGTTAGCTGCGATGACATGGAATTTAGGTACGTCTCTCTCTGGACTCATTTTCATAAGTTACCGTATGCTTGTTTTTCTAGGACATCGACAGAAGGCATTGGAAATCTATTGGGAAATGTGGAAAACGTGGACGTTCAAGATGATGTTGAATGGGGATGTTCGTTACGTATTAAAATTCAAATTGATGTGCATAGCCGTTGA

mRNA sequence

ATGGAGGACGACGAGGATTTGGTGAAGCAACTACAGGACCTTCATGTGACTCCTGCAGAAAGAGCTAGTGTTTTTCAACTCCCTGACAGCGAGATAGACCGATCAGAACAGAAACTAGAGAATACGATATTGTGCAAAATACACACAAAGAAGAAAATTAATCCAAACATGTTTAGTTCAAAAATGCCAAAGATATGGAATCAAGAGAATACAATTATCGATAAGGTGGGATTCAATATTTTCTTTTGCAAGTTCAAGAATGTGAAGATCAAAGGATGGATCTTAGATTCCGGACCATGGTTCTACGATAAAGCTAGGCTTTTATTCGAGGAGCCTAAGGCGGGAGTTAGCTGCGATGACATGGAATTTAGGTACGTCTCTCTCTGGACTCATTTTCATAAGTTACCGTATGCTTGTTTTTCTAGGACATCGACAGAAGGCATTGGAAATCTATTGGGAAATGTGGAAAACGTGGACGTTCAAGATGATGTTGAATGGGGATGTTCGTTACGTATTAAAATTCAAATTGATGTGCATAGCCGTTGA

Coding sequence (CDS)

ATGGAGGACGACGAGGATTTGGTGAAGCAACTACAGGACCTTCATGTGACTCCTGCAGAAAGAGCTAGTGTTTTTCAACTCCCTGACAGCGAGATAGACCGATCAGAACAGAAACTAGAGAATACGATATTGTGCAAAATACACACAAAGAAGAAAATTAATCCAAACATGTTTAGTTCAAAAATGCCAAAGATATGGAATCAAGAGAATACAATTATCGATAAGGTGGGATTCAATATTTTCTTTTGCAAGTTCAAGAATGTGAAGATCAAAGGATGGATCTTAGATTCCGGACCATGGTTCTACGATAAAGCTAGGCTTTTATTCGAGGAGCCTAAGGCGGGAGTTAGCTGCGATGACATGGAATTTAGGTACGTCTCTCTCTGGACTCATTTTCATAAGTTACCGTATGCTTGTTTTTCTAGGACATCGACAGAAGGCATTGGAAATCTATTGGGAAATGTGGAAAACGTGGACGTTCAAGATGATGTTGAATGGGGATGTTCGTTACGTATTAAAATTCAAATTGATGTGCATAGCCGTTGA

Protein sequence

MEDDEDLVKQLQDLHVTPAERASVFQLPDSEIDRSEQKLENTILCKIHTKKKINPNMFSSKMPKIWNQENTIIDKVGFNIFFCKFKNVKIKGWILDSGPWFYDKARLLFEEPKAGVSCDDMEFRYVSLWTHFHKLPYACFSRTSTEGIGNLLGNVENVDVQDDVEWGCSLRIKIQIDVHSR
Homology
BLAST of Lag0032805 vs. NCBI nr
Match: TXG54013.1 (hypothetical protein EZV62_019269 [Acer yangbiense])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-18
Identity = 56/178 (31.46%), Postives = 94/178 (52.81%), Query Frame = 0

Query: 3   DDEDLVKQLQDLHVTPAERASVFQLPDSEIDRSEQKLENTILCKIHTKKKINPNMFSSKM 62
           + +D+ ++ + L +   +   + ++  S  +R EQ L  +++ K  T K IN   F S +
Sbjct: 2   ESDDISRKCEKLSLDD-DNGPIERIKGSLQERGEQSLSLSLIGKAITNKVINREAFKSTI 61

Query: 63  PKIWNQENTI-IDKVGFNIFFCKFKNVKIKGWILDSGPWFYDKARLLFEEPKAGVSCDDM 122
             IW  +N + ++ +G NIF  +F+N   +  IL+ GPW +DK  L+  E        D+
Sbjct: 62  STIWQTKNEVTMELMGINIFKFRFQNYWDRKRILEGGPWLFDKQLLVLREASGSEKVTDL 121

Query: 123 EFRYVSLWTHFHKLPYACFSRTSTEGIGNLLGNVENVDVQDDVEW-GCSLRIKIQIDV 179
           +FRYV  W   H LP AC +R     +G L+G V+ +D  +  E  G  +RI++ IDV
Sbjct: 122 QFRYVPFWIQLHNLPLACLNREIGLHLGGLVGQVKEIDAGESGECVGQFIRIRVLIDV 178

BLAST of Lag0032805 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-18
Identity = 51/176 (28.98%), Postives = 96/176 (54.55%), Query Frame = 0

Query: 6   DLVKQLQDLHVTPAERASVFQLPDSEIDRSEQKLENTILCKIHTKKKINPNMFSSKMPKI 65
           +L+++ ++  +T  E      +  S ++ + + LE +++CK+ +K+ I+  +  + +   
Sbjct: 5   NLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNTLKIA 64

Query: 66  WNQENTI--IDKVGFNIFFCKFKNVKIKGWILDSGPWFYDKARLLFEEPKAGVSCDDMEF 125
           W  +     +D +GFNIF   F     +  IL  GPW +D+A ++ + P +     DM+F
Sbjct: 65  WKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDF 124

Query: 126 RYVSLWTHFHKLPYACFSRTSTEGIGNLLGNVENVDVQ-DDVEWGCSLRIKIQIDV 179
           R VSLW HF  L  AC ++T    +GN +G  E+V+   ++  WG  LR++++ DV
Sbjct: 125 RNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

BLAST of Lag0032805 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 9.1e-18
Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 0

Query: 4   DEDLVKQLQDLHVTPAERASVFQLPDSEI-DRSEQKLEN-------TILCKIHTKKKINP 63
           DE L + ++ L +T  E+  +F + + EI D  E ++E+       +++CK+ T K I  
Sbjct: 3   DELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPG 62

Query: 64  NMFSSKMPKIWNQENTIIDKVGFNIFFCKFKNVKIKGWILDSGPWFYDKARLLFEEPKAG 123
            +F + MP+IW   N  I+ VG N+F CKFK V+ K  IL++GPWF+DK+ ++ EEP+A 
Sbjct: 63  EVFKNMMPRIWANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPRAN 122

Query: 124 VSCDDMEFRYVSLWT 131
            + +++EFR  + WT
Sbjct: 123 CNFNELEFR--TNWT 135

BLAST of Lag0032805 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-17
Identity = 49/129 (37.98%), Postives = 81/129 (62.79%), Query Frame = 0

Query: 4   DEDLVKQLQDLHVTPAERASVFQLPDSEI-DRSEQKLEN-------TILCKIHTKKKINP 63
           DE L + ++ L +T  E+  +F + + EI D  E ++E+       +++CK+ T K I  
Sbjct: 3   DELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPG 62

Query: 64  NMFSSKMPKIWNQENTIIDKVGFNIFFCKFKNVKIKGWILDSGPWFYDKARLLFEEPKAG 123
            +F + MP+IW   N  I+ VG N+F CKFK V+ K  IL++GPWF+DK+ ++ EEP+A 
Sbjct: 63  EVFKNMMPRIWANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPRAN 122

Query: 124 VSCDDMEFR 125
            + +++EFR
Sbjct: 123 CNFNELEFR 131

BLAST of Lag0032805 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-17
Identity = 48/175 (27.43%), Postives = 88/175 (50.29%), Query Frame = 0

Query: 6   DLVKQLQDLHVTPAERASVFQLPDSEIDRSEQKLENTILCKIHTKKKINPNMFSSKMPKI 65
           D + +L +      E+     +   +   + + ++   + K+HT K+I+   F S M  +
Sbjct: 2   DEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKSL 61

Query: 66  WN-QENTIIDKVGFNIFFCKFKNVKIKGWILDSGPWFYDKARLLFEEPKAGVSCDDMEFR 125
           W   E+T I+  G N++   FK++  K  +L SGPW ++ + L+   P A     DM F 
Sbjct: 62  WKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDMNFN 121

Query: 126 YVSLWTHFHKLPYACFSRTSTEGIGNLLGNVENVDVQDDVEW-GCSLRIKIQIDV 179
           + +LW   H +P+ C  +   + +G  +G VE +D     EW G  +R+++QID+
Sbjct: 122 FFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEWTGPFIRVRVQIDI 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TXG54013.13.1e-1831.46hypothetical protein EZV62_019269 [Acer yangbiense][more]
XP_022132681.15.3e-1828.98uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022154991.19.1e-1837.78uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022154990.11.5e-1737.98uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022155933.12.6e-1727.43uncharacterized protein LOC111022932 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 32..162
e-value: 1.4E-18
score: 66.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032805.1Lag0032805.1mRNA