Lag0032743 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032743
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	B-like cyclin
Location	chr11: 36972751 .. 36973157 (-)
RNA-Seq Expression	Lag0032743
Synteny	Lag0032743

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCTCTCCTAACCATTACGCCGCTTCCTCTTCTTCATCCTCCGGCGTCGGTTGCCACCTCACCGCCCACTTTCTCACTTCCACCACGGCGGACTACCCGATCTACGATGCTCCAGCCATTTTCAAGCTTTTCCAATCGGAGCTCGAACACATCCCTAGGACTCGATTGATTTCCTTACTGGTTAATGTCGATTTTCACCTTGTTAATGTCGTCAAGTCCAACAATTTGATCGGAATCTTGAGGCTGATGATTTTAGGGCTTTTTTTTCCTTGCAGTGGCCGAATGGTTGGTCGTTTCAGCTTCTATCGGTGGCGTGTTTGTCTCTAGCGACGAAAATGGAGGAACCTCATGTCCCACTGCTTTCGGACCTCCGCTGCAGACGACAGCGGCGATGGCGATAG

mRNA sequence

ATGTCTCTCTCTCCTAACCATTACGCCGCTTCCTCTTCTTCATCCTCCGGCGTCGGTTGCCACCTCACCGCCCACTTTCTCACTTCCACCACGGCGGACTACCCGATCTACGATGCTCCAGCCATTTTCAAGCTTTTCCAATCGGAGCTCGAACACATCCCTAGGACTCGATTGATTTCCTTACTGTGGCCGAATGGTTGGTCGTTTCAGCTTCTATCGGTGGCGTGTTTGTCTCTAGCGACGAAAATGGAGGAACCTCATGTCCCACTGCTTTCGGACCTCCGCTGCAGACGACAGCGGCGATGGCGATAG

Coding sequence (CDS)

ATGTCTCTCTCTCCTAACCATTACGCCGCTTCCTCTTCTTCATCCTCCGGCGTCGGTTGCCACCTCACCGCCCACTTTCTCACTTCCACCACGGCGGACTACCCGATCTACGATGCTCCAGCCATTTTCAAGCTTTTCCAATCGGAGCTCGAACACATCCCTAGGACTCGATTGATTTCCTTACTGTGGCCGAATGGTTGGTCGTTTCAGCTTCTATCGGTGGCGTGTTTGTCTCTAGCGACGAAAATGGAGGAACCTCATGTCCCACTGCTTTCGGACCTCCGCTGCAGACGACAGCGGCGATGGCGATAG

Protein sequence

MSLSPNHYAASSSSSSGVGCHLTAHFLTSTTADYPIYDAPAIFKLFQSELEHIPRTRLISLLWPNGWSFQLLSVACLSLATKMEEPHVPLLSDLRCRRQRRWR

Homology

[Close]

BLAST of Lag0032743 vs. NCBI nr
Match: XP_038903710.1 (cyclin-D2-2-like [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16
Identity = 63/143 (44.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 1   MSLSPNHYAASSSSSSGVGCHLTAHFLTSTTADYPIYDAPAIFKLFQSELEHIPR----- 60
           MSLSP H++A+SSSSSG G H+ A FL S  AD+PI D  AIF L QSEL+H+PR     
Sbjct: 1   MSLSP-HHSAASSSSSGAGHHIPADFLCSAAADFPISDDSAIFSLLQSELDHMPRRDYVR 60

Query: 61  ----------TRLISLLW---------------------------------PNGWSFQLL 96
                      R  S+ W                                  NGW+FQLL
Sbjct: 61  RCRDQSIDVTARQDSINWILKVHAHYNFKPVTAILSVNYFDRFLSSNFLPRRNGWAFQLL 120

[Close]

BLAST of Lag0032743 vs. NCBI nr
Match: KAE8649027.1 (hypothetical protein Csa_015003 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 56/143 (39.16%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 1   MSLSPNHYAASSSSSSGVGCHLTAHFLTSTTADYPIYDAPAIFKLFQSELEHIPR----- 60
           MSLSP+H++ +SSSSS      ++HFL S+  D+P+ D   IF L QS+L H+PR     
Sbjct: 1   MSLSPHHHSPASSSSSS-----SSHFLCSSAPDFPLSDDSPIFTLLQSQLHHMPRLDYLR 60

Query: 61  ----------TRLISLLW---------------------------------PNGWSFQLL 96
                      R  S+ W                                  NGW+FQLL
Sbjct: 61  RCRDHSIDLTARQDSINWILMVHSHYNFKPVTAILSVNYFDRFLSSNILPRRNGWAFQLL 120

[Close]

BLAST of Lag0032743 vs. NCBI nr
Match: XP_004150260.1 (cyclin-D4-1 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 56/143 (39.16%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 1   MSLSPNHYAASSSSSSGVGCHLTAHFLTSTTADYPIYDAPAIFKLFQSELEHIPR----- 60
           MSLSP+H++ +SSSSS      ++HFL S+  D+P+ D   IF L QS+L H+PR     
Sbjct: 1   MSLSPHHHSPASSSSSS-----SSHFLCSSAPDFPLSDDSPIFTLLQSQLHHMPRLDYLR 60

Query: 61  ----------TRLISLLW---------------------------------PNGWSFQLL 96
                      R  S+ W                                  NGW+FQLL
Sbjct: 61  RCRDHSIDLTARQDSINWILMVHSHYNFKPVTAILSVNYFDRFLSSNILPRRNGWAFQLL 120

[Close]

BLAST of Lag0032743 vs. NCBI nr
Match: XP_008454410.1 (PREDICTED: cyclin-D4-2-like [Cucumis melo] >ADN33810.1 cyclin d protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 58/146 (39.73%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 1   MSLSPNHY---AASSSSSSGVGCHLTAHFLTSTTADYPIYDAPAIFKLFQSELEHIPR-- 60
           MSLSP+H+   ++SSSSSS      ++HFL S   D+PI D   I  L QSEL H+PR  
Sbjct: 1   MSLSPHHHSPASSSSSSSSSSSSSSSSHFLCSYAPDFPISDDSPISTLLQSELHHMPRID 60

Query: 61  -------------TRLISLLW---------------------------------PNGWSF 96
                         R  S+ W                                  NGW+F
Sbjct: 61  YLRRCRDHSIDVTARQDSINWILKVHSHYNFKPVTAILSVNYFDRFLSSNILPRRNGWAF 120

[Close]

BLAST of Lag0032743 vs. NCBI nr
Match: XP_023552812.1 (cyclin-D2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 59/143 (41.26%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 1   MSLSPNHYAASSSSSSGVGCHLTAHFLTSTTADYPIYDAPAIFKLFQSELEHIPR----- 60
           MSLSP+  + +SSSSSG   H++A  L ST AD  I D  AIF L QSEL+H+PR     
Sbjct: 1   MSLSPDQ-SPASSSSSGPARHVSADLLCSTAADSLISDDSAIFSLLQSELDHMPRRDYVR 60

Query: 61  ----------TRLISLLW---------------------------------PNGWSFQLL 96
                      R  S+ W                                  NGW FQLL
Sbjct: 61  RCRDRSIDVIARQDSINWILKVHAHYNFKPVTAILSVNYFDRFLSANFLPRRNGWPFQLL 120

[Close]

BLAST of Lag0032743 vs. ExPASy Swiss-Prot
Match: Q0J233 (Cyclin-D2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 5.7e-04
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 50  LEHIPRTRLISLLWPNGWSFQLLSVACLSLATKMEEPHVPLLSDLRCRRQR 101
           L H+P  +        GW+ QLL+VACLSLA KMEE  VP L DL+    R
Sbjct: 116 LRHLPEGQ--------GWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSR 158

[Close]

BLAST of Lag0032743 vs. ExPASy Swiss-Prot
Match: Q8LGA1 (Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.5e-04
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 66  GWSFQLLSVACLSLATKMEEPHVPLLSDLR 96
           GW  QLL+VACLSLA K+EE  VP+L DL+
Sbjct: 120 GWILQLLAVACLSLAAKIEETEVPMLIDLQ 149

[Close]

BLAST of Lag0032743 vs. ExPASy Swiss-Prot
Match: Q8H339 (Cyclin-D1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 9.8e-04
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 65  NGWSFQLLSVACLSLATKMEEPHVPLLSDLRCRRQR 101
           NGW+ QLL+V CLSLA KMEE  VP + DL+    R
Sbjct: 156 NGWAMQLLAVTCLSLAAKMEETLVPSILDLQMEDAR 191

The following BLAST results are available for this feature:

BLAST of Lag0032743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903710.1	4.8e-16	44.06	cyclin-D2-2-like [Benincasa hispida]	[more]
KAE8649027.1	4.2e-12	39.16	hypothetical protein Csa_015003 [Cucumis sativus]	[more]
XP_004150260.1	4.2e-12	39.16	cyclin-D4-1 [Cucumis sativus]	[more]
XP_008454410.1	1.6e-11	39.73	PREDICTED: cyclin-D4-2-like [Cucumis melo] >ADN33810.1 cyclin d protein [Cucumis...	[more]
XP_023552812.1	4.7e-11	41.26	cyclin-D2-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0032743 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J233	5.7e-04	49.02	Cyclin-D2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD2-1 PE=3 SV=2	[more]
Q8LGA1	7.5e-04	66.67	Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2	[more]
Q8H339	9.8e-04	58.33	Cyclin-D1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD1-2 PE=3 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 20..101 e-value: 6.8E-6 score: 28.0
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 68..95 e-value: 8.8E-5 score: 22.3
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 66..94 e-value: 8.90792E-4 score: 33.3661
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 57..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032743.1	Lag0032743.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0044772	mitotic cell cycle phase transition
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity