Lag0032700 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032700
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 36461702 .. 36463132 (+)
RNA-Seq Expression	Lag0032700
Synteny	Lag0032700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATTACAACAAAGGAATGGAATAGCCTTAACCTATCCCTTATTCCTAGCCTCCACTCAACATGGACATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTCAAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTATTTTCTCGCCGACGTCCAGGCTTATGTGCAGATTTGCCCGACCCTACCTTAAGCATCTCCCTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAATCACGCTGCTTTGAATGTGTGCCTGATGGTTTGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAAAGCTTGAGGAGGCCTAAGAAGTTCCCAGGCCTCTGTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGATCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGCGCCTCTCTTCAAGGTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTATCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGACCTAGGAAATTCCTGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCTCGAGCCTCTCTTCAAGCTGTTGTATTCATCCCGAGGGTGCGTACACTCAATCGGGGGAAGTGCGGAAGTCTGGCCTCTACAAGGATCATTCCCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTAA

mRNA sequence

ATGACGATTACAACAAAGGAATGGAATAGCCTTAACCTATCCCTTATTCCTAGCCTCCACTCAACATGGACATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTCAAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTATTTTCTCGCCGACGTCCAGGCTTATGTGCAGATTTGCCCGACCCTACCTTAAGCATCTCCCTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAATCACGCTGCTTTGAATGTGTGCCTGATGGTTTGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAAAGCTTGAGGAGGCCTAAGAAGTTCCCAGGCCTCTGTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGATCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGCGCCTCTCTTCAAGGTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTATCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGACCTAGGAAATTCCTGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCTCGAGCCTCTCTTCAAGCTGTTGTATTCATCCCGAGGGTGCGTACACTCAATCGGGGGAAGTGCGGAAGTCTGGCCTCTACAAGGATCATTCCCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTAA

Coding sequence (CDS)

ATGACGATTACAACAAAGGAATGGAATAGCCTTAACCTATCCCTTATTCCTAGCCTCCACTCAACATGGACATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGGACTAGTTCCATACCTGGCCTTTTCAAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTATTTTCTCGCCGACGTCCAGGCTTATGTGCAGATTTGCCCGACCCTACCTTAAGCATCTCCCTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAATCACGCTGCTTTGAATGTGTGCCTGATGGTTTGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAAAGCTTGAGGAGGCCTAAGAAGTTCCCAGGCCTCTGTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGATCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGCGCCTCTCTTCAAGGTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTATCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGACCTAGGAAATTCCTGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCTCGAGCCTCTCTTCAAGCTGTTGTATTCATCCCGAGGGTGCGTACACTCAATCGGGGGAAGTGCGGAAGTCTGGCCTCTACAAGGATCATTCCCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTAA

Protein sequence

MTITTKEWNSLNLSLIPSLHSTWTFITSSVAFFEREGLVPYLAFSKVDGRPRPWHEADQQLCTIFSPTSRLMCRFARPYLKHLPAALSASTVLKSKVTENSKQSRCFECVPDGLPWSWDAWPWHDGAYTLPGKSLRRPKKFPGLCSSCHGHPRGAYTLLGKRLGEAQEVPEPLFKLSRSSQGCVHSSGEKAWGGPGSSRASLQAVTIIPGVRTLLWGKGLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFSRLSSRCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHCHPRGAYTLLGKSLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSSSYHGHPRGAYTLLGKSLGRPRKFLSLSSSCQGHPRGAYTLLGKSLGRPRKFSSLSSSCCIHPEGAYTQSGEVRKSGLYKDHSRLATRVTSYGKSTLCETQCKELH

Homology

[Close]

BLAST of Lag0032700 vs. NCBI nr
Match: KAG8003047.1 (hypothetical protein GBF38_015751 [Nibea albiflora])

HSP 1 Score: 63.5 bits (153), Expect = 5.5e-06
Identity = 59/229 (25.76%), Postives = 84/229 (36.68%), Query Frame = 0


Query: 195 PGSSRASLQAVTIIPGV-RTLLWGKG--LGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRP 254
           PG  R  +     +PG  R  +W      GR R +  +S S  G  R    +     GR 
Sbjct: 62  PGCHRDYVWVSDSLPGCHRDYVWVSDSLRGRHRDYVWVSDSLRGRHRDYVQVSDSLQGRH 121

Query: 255 RKFSRLSSRCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFP 314
             +  +     G  R    +     GR R +  +S S  G  R    +     GR R + 
Sbjct: 122 SDYVHVLDSLRGRHRDYVQVSDSLRGRHRDYVQVSDSLPGCHRDYVQVSDSLQGRHRDYV 181

Query: 315 SLSSSCHCHPRGAYTLLGKSLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSS 374
            +S S     R    +     GR R +  +S S QG  R    +     GR R +  +S 
Sbjct: 182 QVSDSLQGRHRDYVQVSDSLQGRHRDYVQVSDSLQGRHRDYVQVSDSLQGRHRDYVQVSD 241

Query: 375 SYHGHPRGAYTLLGKSLGRPRKFLSLSSSCQGHPRGAYTLLGKSLGRPR 421
           S  G  R    +L    GR R ++ +S S QG  R    +L    GR R
Sbjct: 242 SLQGRHRDYVQVLDSLWGRHRDYVQVSDSLQGRHRDYVQVLDSLCGRHR 290

[Close]

BLAST of Lag0032700 vs. ExPASy TrEMBL
Match: A0A3Q3AQ40 (Uncharacterized protein OS=Kryptolebias marmoratus OX=37003 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-04
Identity = 50/139 (35.97%), Postives = 54/139 (38.85%), Query Frame = 0


Query: 224 RKFPSLSSSCHGHPRGAYTLLGKSLGRPRK-------FSRLSSRCHGHPRGAYTLLGKSL 283
           RK P LS  C G  R    L  K  G  RK          L  +C G  R   +LLGK  
Sbjct: 2   RKCPGLSRKCPGLHRKCPGLHRKCPGPCRKCPGLLGMCPSLHGKCPGPCRKCPSLLGKKC 61

Query: 284 GRP--------RKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHCHPRGAYTLL 343
             P         K P LS  C G  R   +L  K  G  RK P LS  C    R   +LL
Sbjct: 62  PGPCRKCPGLLGKCPGLSRKCPGPRRKCPSLHRKCPGPCRKCPGLSRKCPGPCRKCPSLL 121

Query: 344 GKSLGRPRKFPSLSSSCQG 348
           GK  G  RK P L   C G
Sbjct: 122 GKCPGLSRKCPGLHRKCPG 140

The following BLAST results are available for this feature:

BLAST of Lag0032700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8003047.1	5.5e-06	25.76	hypothetical protein GBF38_015751 [Nibea albiflora]	[more]

BLAST of Lag0032700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0032700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3Q3AQ40	9.5e-04	35.97	Uncharacterized protein OS=Kryptolebias marmoratus OX=37003 PE=4 SV=1	[more]

BLAST of Lag0032700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 217..229 e-value: 3.1 score: 12.5 coord: 301..313 e-value: 11.0 score: 9.4 coord: 357..369 e-value: 11.0 score: 9.4 coord: 385..397 e-value: 96.0 score: 4.1 coord: 245..257 e-value: 21.0 score: 7.8 coord: 329..341 e-value: 11.0 score: 9.4 coord: 273..285 e-value: 11.0 score: 9.4 coord: 413..425 e-value: 14.0 score: 8.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032700.1	Lag0032700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding