Lag0032658 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032658
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionarabinogalactan peptide 22-like
Locationchr11: 35750794 .. 35751129 (+)
RNA-Seq ExpressionLag0032658
SyntenyLag0032658
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTCGTTGCTCGTGAAGTCCCTTTCCGTGTTCTATTTTACGTTGCTTTTGTTTTGGCTATGCTTTTGCCTTCTTATGCTGCTGATCCTTTGTCTCCGGCGGCCCAATCTCCTGCTGCTAGCGATGGTAATTACTTTACTTCTTCCTTCCATTTACTCGAGAATATATATACCTTAACCAGTTGGTTACGTTAAGGTTGGCTAACAGGAGTTATTATTATTATGTAATTTGCAGGGACAAGCATAGACCAAGGGATTGCTTATGTGTTGATGTTGTTAGCGCTGGTGCTCACTTACATTATCCATTCAGCTGATCTTTCTATCAGTTTTTAA

mRNA sequence

ATGGCGGTCGTTGCTCGTGAAGTCCCTTTCCGTGTTCTATTTTACGTTGCTTTTGTTTTGGCTATGCTTTTGCCTTCTTATGCTGCTGATCCTTTGTCTCCGGCGGCCCAATCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAAGGGATTGCTTATGTGTTGATGTTGTTAGCGCTGGTGCTCACTTACATTATCCATTCAGCTGATCTTTCTATCAGTTTTTAA

Coding sequence (CDS)

ATGGCGGTCGTTGCTCGTGAAGTCCCTTTCCGTGTTCTATTTTACGTTGCTTTTGTTTTGGCTATGCTTTTGCCTTCTTATGCTGCTGATCCTTTGTCTCCGGCGGCCCAATCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAAGGGATTGCTTATGTGTTGATGTTGTTAGCGCTGGTGCTCACTTACATTATCCATTCAGCTGATCTTTCTATCAGTTTTTAA

Protein sequence

MAVVAREVPFRVLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Homology
BLAST of Lag0032658 vs. NCBI nr
Match: KAG7017004.1 (Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 1  MAVVAREVPFRVLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLAL 60
          MAVVA ++PF V F V FVLAM+LP+  A  L+P AQ PAASDGTSIDQGIAYVLMLLAL
Sbjct: 1  MAVVANKIPFGVFFGVVFVLAMILPA-CAQSLAP-AQPPAASDGTSIDQGIAYVLMLLAL 60

Query: 61 VLTYIIHSADLSISF 76
          VLTYIIHSADLSISF
Sbjct: 61 VLTYIIHSADLSISF 73

BLAST of Lag0032658 vs. NCBI nr
Match: KAG6579545.1 (Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-16
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1  MAVVAREVPFRVLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLAL 60
          MAVVA ++PF V   V FVLAMLLP+  A  L+P AQ PAASDGTSIDQGIAYVLMLLAL
Sbjct: 1  MAVVANKIPFGVFIGVVFVLAMLLPA-CAQSLAP-AQPPAASDGTSIDQGIAYVLMLLAL 60

Query: 61 VLTYIIHSADLSISF 76
          VLTYIIHSADLSISF
Sbjct: 61 VLTYIIHSADLSISF 73

BLAST of Lag0032658 vs. NCBI nr
Match: XP_023532560.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 0

Query: 1  MAVVA-REVPFRVLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLA 60
          M VVA  +VP+ VL  VAFVLAML P+ AADP    AQ P ASDGTS+DQGIAYVLMLLA
Sbjct: 1  MEVVAYNKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LVLTYIIHSADLSIS 75
          L+LTYIIH A+L IS
Sbjct: 61 LLLTYIIHLAELPIS 75

BLAST of Lag0032658 vs. NCBI nr
Match: XP_022996281.1 (arabinogalactan peptide 22-like [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-13
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 0

Query: 1  MAVVAR-EVPFRVLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLA 60
          M VVA  +VP+ VL  VAFVLAML P+ AADP    AQ P ASDGTS+DQGIAYVLMLLA
Sbjct: 1  MEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LVLTYIIHSADLSIS 75
          L+LTYIIH A+L IS
Sbjct: 61 LLLTYIIHLAELPIS 75

BLAST of Lag0032658 vs. NCBI nr
Match: KAG7036000.1 (Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 1  MAVVA-REVPFRVLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLA 60
          M VVA  +VP+ VL  VAF LAML P+ AADP    AQ P ASDGTS+DQGIAYVLMLLA
Sbjct: 1  MEVVAYNKVPYGVLVAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LVLTYIIHSADLSIS 75
          L+LTYIIH A+L IS
Sbjct: 61 LLLTYIIHLAELPIS 75

BLAST of Lag0032658 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 12 VLFYVAFVLAMLLPSYAADPLSPAAQSPAASDGTSIDQGIAYVLMLLALVLTYIIHSADL 71
          V+   AFV A++ P   A  L+P A SP  SDGTSIDQGIAY+LM++ALVLTY+IH  D 
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAP-APSP-TSDGTSIDQGIAYLLMVVALVLTYLIHPLDA 68

Query: 72 SIS 75
          S S
Sbjct: 69 SSS 69

BLAST of Lag0032658 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 17 AFVLAMLLPSYAADPLSPAAQSPA-ASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF 76
          +FV A++L    A  L+PA   PA  SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Sbjct: 14 SFVFAVILSLAGAQSLAPA---PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSY 70

BLAST of Lag0032658 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 10 FRVLFYVAFVLAMLLPSYAADPLSPAAQSPA-ASDGTSIDQGIAYVLMLLALVLTYIIH 68
          F V   V+ + A+LLP   A   +PA   PA  SDGT+IDQGIAYVLML+ALVLTY+IH
Sbjct: 8  FGVSTIVSIIFAILLPMAHAQSAAPA---PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of Lag0032658 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-05
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 9  PFRVLFYVAFVLAMLLPSYAADPLSPAAQSPA-ASDGTSIDQGIAYVLMLLALVLTYIIH 68
          P  +L     +  +LLP   +   SPA   PA  SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 7  PLEILAVFVIISVILLPIAQSHSSSPA---PAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7017004.11.2e-1678.67Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6579545.13.5e-1678.67Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023532560.12.1e-1370.67arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo][more]
XP_022996281.13.6e-1370.67arabinogalactan peptide 22-like [Cucurbita maxima][more]
KAG7036000.16.2e-1369.33Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q9M3731.4e-0758.73Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1[more]
O823373.1e-0758.33Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1[more]
Q8L9T82.0e-0659.32Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1[more]
Q9FK163.8e-0553.33Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan protein 16/20/22/41PFAMPF06376AGPcoord: 33..67
e-value: 2.2E-17
score: 62.6
IPR009424Arabinogalactan protein 16/20/22/41PANTHERPTHR33374ARABINOGALACTAN PROTEIN 20coord: 1..74
NoneNo IPR availablePANTHERPTHR33374:SF38ARABINOGALACTAN PROTEIN 41coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032658.1Lag0032658.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane