Lag0032648 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032648
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEpimerase domain-containing protein
Locationchr11: 35623547 .. 35623942 (-)
RNA-Seq ExpressionLag0032648
SyntenyLag0032648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCTCAAGGCTGGAGAAATCAAAATCCACCCAATCCGCCGTCGTCTGGGACTGCGGAAGCTCCCTCTACGACTCCTTCGAACTCAACTCCCTCAAACGCCAGCTCGATTCCGCAATCGCTTCAAGAACTCTGTCCATGCCCCACCTCCCCGACGCCCGCCGCTGCCTTCTTCCTCTTCCTCCGCCGCCCTCCAAACGCCCCTCCAAGATTTCCGCCTCTTTCAACAAACTTCTCCGCTCGCTCTTCAGGCACAAGCCCAATTCCACCCCCACCTTTCAAAATCCCGAGGTTGGATTCCAAGGATTCTCGCCGGAGATTGCCTCTCTCGTCCGCCGGACTGCGTCCGAGAGGTTCACGCCGCCCACTTCCATGGGTATTTCTTGTGCTTGA

mRNA sequence

ATGGCGACCTCAAGGCTGGAGAAATCAAAATCCACCCAATCCGCCGTCGTCTGGGACTGCGGAAGCTCCCTCTACGACTCCTTCGAACTCAACTCCCTCAAACGCCAGCTCGATTCCGCAATCGCTTCAAGAACTCTGTCCATGCCCCACCTCCCCGACGCCCGCCGCTGCCTTCTTCCTCTTCCTCCGCCGCCCTCCAAACGCCCCTCCAAGATTTCCGCCTCTTTCAACAAACTTCTCCGCTCGCTCTTCAGGCACAAGCCCAATTCCACCCCCACCTTTCAAAATCCCGAGGTTGGATTCCAAGGATTCTCGCCGGAGATTGCCTCTCTCGTCCGCCGGACTGCGTCCGAGAGGTTCACGCCGCCCACTTCCATGGGTATTTCTTGTGCTTGA

Coding sequence (CDS)

ATGGCGACCTCAAGGCTGGAGAAATCAAAATCCACCCAATCCGCCGTCGTCTGGGACTGCGGAAGCTCCCTCTACGACTCCTTCGAACTCAACTCCCTCAAACGCCAGCTCGATTCCGCAATCGCTTCAAGAACTCTGTCCATGCCCCACCTCCCCGACGCCCGCCGCTGCCTTCTTCCTCTTCCTCCGCCGCCCTCCAAACGCCCCTCCAAGATTTCCGCCTCTTTCAACAAACTTCTCCGCTCGCTCTTCAGGCACAAGCCCAATTCCACCCCCACCTTTCAAAATCCCGAGGTTGGATTCCAAGGATTCTCGCCGGAGATTGCCTCTCTCGTCCGCCGGACTGCGTCCGAGAGGTTCACGCCGCCCACTTCCATGGGTATTTCTTGTGCTTGA

Protein sequence

MATSRLEKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPDARRCLLPLPPPPSKRPSKISASFNKLLRSLFRHKPNSTPTFQNPEVGFQGFSPEIASLVRRTASERFTPPTSMGISCA
Homology
BLAST of Lag0032648 vs. NCBI nr
Match: XP_038875345.1 (uncharacterized protein LOC120067824 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 110/156 (70.51%), Postives = 118/156 (75.64%), Query Frame = 0

Query: 1   MATSRLEKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPDARRCLLP 60
           MA+ +  KSKS+QSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP  RRCLLP
Sbjct: 1   MASPKFNKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP-GRRCLLP 60

Query: 61  L----PPPPSKRPSKISASFNKLLRSLFRHKPNSTPTF---------------------Q 120
                PPPPSKRPSKIS S +K LRS+FRHKPNS+P+F                     +
Sbjct: 61  SPPPPPPPPSKRPSKISRSLHKFLRSVFRHKPNSSPSFNPERLDSGFYVLYEDEANSLSK 120

Query: 121 NPEVGFQGFSPEIASLVRRTASERFTPPTSMGISCA 132
            PEVGF GFSPEIASLVRRTASERFT  TSMGISCA
Sbjct: 121 IPEVGFAGFSPEIASLVRRTASERFTAATSMGISCA 155

BLAST of Lag0032648 vs. NCBI nr
Match: XP_022929008.1 (uncharacterized protein LOC111435738 [Cucurbita moschata] >XP_023551387.1 uncharacterized protein LOC111809224 [Cucurbita pepo subsp. pepo] >KAG6579550.1 hypothetical protein SDJN03_23998, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017009.1 hypothetical protein SDJN02_22120, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 8.2e-45
Identity = 106/155 (68.39%), Postives = 116/155 (74.84%), Query Frame = 0

Query: 1   MATSRLEKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPDARRCLLP 60
           MA+ +  KSKS+QSA+VWDCGSSLYDSFELNSLKRQLDSAIASR+LSMPHLP  RRCL P
Sbjct: 1   MASPKFNKSKSSQSALVWDCGSSLYDSFELNSLKRQLDSAIASRSLSMPHLP-GRRCLPP 60

Query: 61  LPP-PPSKRPSKISASFNKLLRSLFRHKPNSTPTFQ-----------------------N 120
            PP PPSKRPSKIS S +K LRS+FRHKPNS+P+ +                       N
Sbjct: 61  PPPLPPSKRPSKISRSLHKFLRSVFRHKPNSSPSVEANPERADAGYYVLYGDDADPLSAN 120

Query: 121 PEVGFQGFSPEIASLVRRTASERFTPPTSMGISCA 132
           PEVGF GFSPEI SLVRRTASERFT  TSMGISCA
Sbjct: 121 PEVGFPGFSPEIGSLVRRTASERFTAATSMGISCA 154

BLAST of Lag0032648 vs. NCBI nr
Match: XP_022970102.1 (uncharacterized protein LOC111469095 [Cucurbita maxima])

HSP 1 Score: 187.6 bits (475), Expect = 7.0e-44
Identity = 105/155 (67.74%), Postives = 116/155 (74.84%), Query Frame = 0

Query: 1   MATSRLEKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPDARRCLLP 60
           MA+ +L KSKS+QSA+VWDCGSSLYDSFELNSLKRQLDSAIASR+LSMPHLP  RRCL P
Sbjct: 42  MASPKLNKSKSSQSALVWDCGSSLYDSFELNSLKRQLDSAIASRSLSMPHLP-GRRCLPP 101

Query: 61  LPP-PPSKRPSKISASFNKLLRSLFRHKPNSTPTFQ-----------------------N 120
            PP PPSKRPSKIS S +K LRS+FRHKPNS+P+ +                       N
Sbjct: 102 PPPLPPSKRPSKISRSLHKFLRSVFRHKPNSSPSVEANPERADAGYYVLYGDDADPLSAN 161

Query: 121 PEVGFQGFSPEIASLVRRTASERFTPPTSMGISCA 132
           P+VGF  FSPEI SLVRRTASERFT  TSMGISCA
Sbjct: 162 PKVGFPEFSPEIGSLVRRTASERFTAATSMGISCA 195

BLAST of Lag0032648 vs. NCBI nr
Match: XP_008437381.1 (PREDICTED: uncharacterized protein LOC103482814 [Cucumis melo] >KAA0042691.1 putative inactive serine/threonine-protein kinase slob1 isoform X1 [Cucumis melo var. makuwa] >TYK06094.1 putative inactive serine/threonine-protein kinase slob1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-42
Identity = 107/159 (67.30%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 1   MATSRLEKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPDARRCLL- 60
           MAT    KSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP  RRCLL 
Sbjct: 1   MATPTFNKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP-GRRCLLP 60

Query: 61  ---PLPPPPSKRPSKISASFNKLLRSLFRHKPNSTP-TFQN------------------- 120
              P PPPPSKR SKIS S +K LRS+FRHK NS P +F+                    
Sbjct: 61  PPPPPPPPPSKRSSKISRSLHKFLRSVFRHKTNSIPGSFEANPERVDEGFYVLYEDESNS 120

Query: 121 ----PEVGFQGFSPEIASLVRRTASERFTPPTSMGISCA 132
               PEVGF GFSPEI SLVRRT SERFT  TSM ISCA
Sbjct: 121 LSAVPEVGFPGFSPEIGSLVRRTTSERFTAATSMSISCA 158

BLAST of Lag0032648 vs. NCBI nr
Match: XP_011654703.1 (uncharacterized protein LOC105435436 [Cucumis sativus] >KGN50029.1 hypothetical protein Csa_000541 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 105/162 (64.81%), Postives = 109/162 (67.28%), Query Frame = 0

Query: 1   MATSRLEKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPDARRCLL- 60
           MAT    KSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP  R C L 
Sbjct: 1   MATPTFNKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP-GRLCTLL 60

Query: 61  ----PLPPPPSKRPSKISASFNKLLRSLFRHKPNSTP-TFQN------------------ 120
               P PPPPSKR SKIS S +K LRS+F+HK NS P TF+                   
Sbjct: 61  PPPPPPPPPPSKRSSKISRSLHKFLRSVFKHKTNSIPGTFEANPERVDDDHGFYVLYEDE 120

Query: 121 -------PEVGFQGFSPEIASLVRRTASERFTPPTSMGISCA 132
                  PEVGF GFSPEI SLVRRT SERFT  TSM ISCA
Sbjct: 121 ANSLSAVPEVGFPGFSPEIGSLVRRTTSERFTAATSMSISCA 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875345.11.5e-4670.51uncharacterized protein LOC120067824 [Benincasa hispida][more]
XP_022929008.18.2e-4568.39uncharacterized protein LOC111435738 [Cucurbita moschata] >XP_023551387.1 unchar... [more]
XP_022970102.17.0e-4467.74uncharacterized protein LOC111469095 [Cucurbita maxima][more]
XP_008437381.16.5e-4267.30PREDICTED: uncharacterized protein LOC103482814 [Cucumis melo] >KAA0042691.1 put... [more]
XP_011654703.12.7e-4064.81uncharacterized protein LOC105435436 [Cucumis sativus] >KGN50029.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978:SF4SERINE/THREONINE-KINASEcoord: 97..131
NoneNo IPR availablePANTHERPTHR33978:SF4SERINE/THREONINE-KINASEcoord: 7..95
NoneNo IPR availablePANTHERPTHR33978SERINE/THREONINE-KINASEcoord: 7..95
coord: 97..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032648.1Lag0032648.1mRNA