Lag0032645 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032645
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMYB-like transcription factor ETC3
Locationchr11: 35592198 .. 35592646 (+)
RNA-Seq ExpressionLag0032645
SyntenyLag0032645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCGAAGCTAGGAAGATGGCGAAACACCCACAGAAACAGTCCAAGAGCAGGAATTCGAACTCGGAAGGTGTTCCCATTTTTCTGGTTTTGCTGCCATGGCTACTGGAAACTTTTGAATGGTAAAGAAAGTTATTATAGCTGCTTTTCCTTGTAATGTGTTTGTTGCAGAAGTTACCAGTTTGGAATGGGAGGTCATTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGGCTTGTTGGAGACAGGTTTTATCTCTCTCTCTCTCTATTTCTCTGAAAAGTTCGATATGACTCTCCGCCATCGTCGTCCTCGTTCTGAACGTGTTTTACTACTGTTACATTGAACTTCAGGTGGGATTTGATCGCGGGACGAATCCCGGGACGAACTGCAGTAGAAATAGAGAGGTTTTGGATATTGAAACATGCTTCCTGA

mRNA sequence

ATGGAAACCGAAGCTAGGAAGATGGCGAAACACCCACAGAAACAGTCCAAGAGCAGGAATTCGAACTCGGAAGAAGTTACCAGTTTGGAATGGGAGGTCATTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGGCTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATCCCGGGACGAACTGCAGTAGAAATAGAGAGGTTTTGGATATTGAAACATGCTTCCTGA

Coding sequence (CDS)

ATGGAAACCGAAGCTAGGAAGATGGCGAAACACCCACAGAAACAGTCCAAGAGCAGGAATTCGAACTCGGAAGAAGTTACCAGTTTGGAATGGGAGGTCATTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGGCTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATCCCGGGACGAACTGCAGTAGAAATAGAGAGGTTTTGGATATTGAAACATGCTTCCTGA

Protein sequence

METEARKMAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHAS
Homology
BLAST of Lag0032645 vs. NCBI nr
Match: XP_038874276.1 (transcription factor CPC-like [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 1  METEARKMAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAG 60
          ME EA+K AK PQKQSK R SNSEEVTSLEWEVIQIS+QEEDLIHRMHRLVGDRWDLIAG
Sbjct: 1  MEIEAKKTAKQPQKQSKRRKSNSEEVTSLEWEVIQISDQEEDLIHRMHRLVGDRWDLIAG 60

Query: 61 RIPGRTAVEIERFWILKHAS 81
          RIPGRTAVEIERFWILKH S
Sbjct: 61 RIPGRTAVEIERFWILKHGS 80

BLAST of Lag0032645 vs. NCBI nr
Match: XP_022146038.1 (transcription factor CPC-like isoform X2 [Momordica charantia])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1  METEARKMAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAG 60
          ME EA+KM K PQKQSKSRNS+SEEVTSLEW++IQISEQEEDLI RMH+LVGDRWDLIAG
Sbjct: 1  MEDEAKKMEKQPQKQSKSRNSSSEEVTSLEWKLIQISEQEEDLICRMHKLVGDRWDLIAG 60

Query: 61 RIPGRTAVEIERFWILKHAS 81
          RIPGRTAVEIERFWILKHAS
Sbjct: 61 RIPGRTAVEIERFWILKHAS 80

BLAST of Lag0032645 vs. NCBI nr
Match: XP_038680402.1 (transcription factor CPC-like [Tripterygium wilfordii])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 51/71 (71.83%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 8  MAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTA 67
          M K P+KQ+K+R++ SEEV+S+EWE I+++EQEEDLI+RMHRLVGD+WDLIAGRIPGR A
Sbjct: 2  MDKRPRKQAKTRSTTSEEVSSIEWEFIKMTEQEEDLIYRMHRLVGDKWDLIAGRIPGRKA 61

Query: 68 VEIERFWILKH 79
           EIERFWI++H
Sbjct: 62 EEIERFWIMRH 72

BLAST of Lag0032645 vs. NCBI nr
Match: XP_038725413.1 (transcription factor CPC-like [Tripterygium wilfordii])

HSP 1 Score: 110.5 bits (275), Expect = 6.6e-21
Identity = 49/71 (69.01%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 8  MAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTA 67
          M K P+KQ+K+R++NSEEV+S+EWE ++++EQEEDLI+RM+RLVGD+WDLIAGRIPGR  
Sbjct: 2  MYKRPRKQAKTRSTNSEEVSSIEWEFVKMTEQEEDLIYRMYRLVGDKWDLIAGRIPGRKP 61

Query: 68 VEIERFWILKH 79
           EIERFWI++H
Sbjct: 62 EEIERFWIMRH 72

BLAST of Lag0032645 vs. NCBI nr
Match: TKR71125.1 (transcription factor TRY-like [Populus alba])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 13 QKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIER 72
          +KQ+K  NS SEEV+S+EWE I +SEQEEDLIHRM+RLVG+RWDLIAGRIPGR A EIER
Sbjct: 8  RKQAKINNSESEEVSSIEWEFINMSEQEEDLIHRMYRLVGERWDLIAGRIPGRKAEEIER 67

Query: 73 FWILKH 79
          FWI+KH
Sbjct: 68 FWIMKH 73

BLAST of Lag0032645 vs. ExPASy Swiss-Prot
Match: O22059 (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.2e-22
Identity = 48/75 (64.00%), Postives = 65/75 (86.67%), Query Frame = 0

Query: 4  EARKMAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIP 63
          +A KM K  ++QSK++ S SEEV+S+EWE +++SE+EEDLI RM++LVGDRW+LIAGRIP
Sbjct: 6  KAEKMDKRRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIP 65

Query: 64 GRTAVEIERFWILKH 79
          GRT  EIER+W++KH
Sbjct: 66 GRTPEEIERYWLMKH 80

BLAST of Lag0032645 vs. ExPASy Swiss-Prot
Match: Q9M157 (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-20
Identity = 46/68 (67.65%), Postives = 60/68 (88.24%), Query Frame = 0

Query: 14 KQSKSRN---SNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEI 73
          KQ K+ +   S+SEEV+SLEWEV+ +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EI
Sbjct: 8  KQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEI 67

Query: 74 ERFWILKH 79
          ERFW++K+
Sbjct: 68 ERFWVMKN 75

BLAST of Lag0032645 vs. ExPASy Swiss-Prot
Match: Q8GV05 (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-18
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 13 QKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIER 72
          +KQ K    +SEEV+S+EWE I ++EQEEDLI RM+RLVGDRWDLIAGR+PGR   EIER
Sbjct: 10 RKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQPEEIER 69

Query: 73 FWILKHA 80
          +WI++++
Sbjct: 70 YWIMRNS 76

BLAST of Lag0032645 vs. ExPASy Swiss-Prot
Match: Q9LNI5 (MYB-like transcription factor ETC1 OS=Arabidopsis thaliana OX=3702 GN=ETC1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 44/73 (60.27%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 6  RKMAKHPQKQSKSRNSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGR 65
          ++ +KH +       S+SEEV+SLEWE I ++++EEDLI RM++LVG+RWDLIAGRIPGR
Sbjct: 4  QRKSKHLKTNPTIVASSSEEVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRIPGR 63

Query: 66 TAVEIERFWILKH 79
          TA EIERFW++K+
Sbjct: 64 TAEEIERFWVMKN 76

BLAST of Lag0032645 vs. ExPASy Swiss-Prot
Match: Q84RD1 (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-16
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 14 KQSKSRNS--NSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIE 73
          +Q+K   S  +SEEV+S+EWE I ++EQEEDLI RM+RLVG+RWDLIAGR+ GR A EIE
Sbjct: 16 RQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIE 75

Query: 74 RFWILKHA 80
          R+WI++++
Sbjct: 76 RYWIMRNS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038874276.13.2e-3190.00transcription factor CPC-like [Benincasa hispida][more]
XP_022146038.12.0e-3088.75transcription factor CPC-like isoform X2 [Momordica charantia][more]
XP_038680402.11.3e-2171.83transcription factor CPC-like [Tripterygium wilfordii][more]
XP_038725413.16.6e-2169.01transcription factor CPC-like [Tripterygium wilfordii][more]
TKR71125.11.5e-2077.27transcription factor TRY-like [Populus alba][more]
Match NameE-valueIdentityDescription
O220596.2e-2264.00Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1[more]
Q9M1572.6e-2067.65MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 ... [more]
Q8GV051.4e-1864.18Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1[more]
Q9LNI53.2e-1860.27MYB-like transcription factor ETC1 OS=Arabidopsis thaliana OX=3702 GN=ETC1 PE=2 ... [more]
Q84RD11.0e-1661.76MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 32..80
e-value: 1.2E-4
score: 31.5
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 37..74
e-value: 2.58521E-6
score: 38.3254
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 37..74
e-value: 1.8E-7
score: 31.3
NoneNo IPR availableGENE3D1.10.10.60coord: 37..77
e-value: 2.6E-9
score: 38.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR47998TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1coord: 12..79
NoneNo IPR availablePANTHERPTHR47998:SF13MYB-LIKE TRANSCRIPTION FACTOR ETC2-RELATEDcoord: 12..79
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 37..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032645.1Lag0032645.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
cellular_component GO:0005634 nucleus
molecular_function GO:0000976 transcription cis-regulatory region binding